Guide to the Human Genome
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Name: CERKL Sequence: fasta or formatted (463aa) NCBI GI: 71896711
Description:

ceramide kinase-like isoform d

Referenced in:

Sphingomyelin, Ceramides, and Glycolipids

Other entries for this name:
alt prot [514aa] ceramide kinase-like isoform g
alt prot [532aa] ceramide kinase-like isoform a
alt prot [558aa] ceramide kinase-like isoform b
alt prot [419aa] ceramide kinase-like isoform c
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.1         33           3
 C cysteine            2.4         11           1
 D aspartate           4.1         19           2
 E glutamate           7.8         36           4
 F phenylalanine       4.5         21           1
 G glycine             5.4         25           2
 H histidine           2.4         11           1
 I isoleucine          5.6         26           2
 K lysine              6.5         30           2
 L leucine            10.2         47           2
 M methionine          2.2         10           1
 N asparagine          4.8         22           2
 P proline             5.8         27           2
 Q glutamine           3.9         18           2
 R arginine            7.3         34           4
 S serine              6.7         31           2
 T threonine           4.3         20           1
 V valine              6.0         28           2
 W tryptophan          1.3          6           1
 Y tyrosine            1.7          8           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ceramide kinase-like isoform d 
CERKL                 0.924   ceramide kinase-like isoform a 
CERKL                 0.884   ceramide kinase-like isoform g 
CERKL                 0.881   ceramide kinase-like isoform c 
CERKL                 0.553   ceramide kinase-like isoform b 
CERK                  0.100   ceramide kinase 
SMARCA2               0.009   SWI/SNF-related matrix-associated actin-dependent re...
SMARCA2               0.009   SWI/SNF-related matrix-associated actin-dependent re...
CLPTM1                0.008   cleft lip and palate associated transmembrane protein...
AGK                   0.005   acylglycerol kinase 
GAPVD1                0.005   GTPase activating protein and VPS9 domains 1 
FMNL1                 0.005   formin-like 1 
SPHK1                 0.005   sphingosine kinase 1 isoform 3 
SPHK1                 0.005   sphingosine kinase 1 isoform 3 
SPHK1                 0.005   sphingosine kinase 1 isoform 1 
SPHK1                 0.005   sphingosine kinase 1 isoform 2 
ADRA2B                0.004   alpha-2B-adrenergic receptor 
CHST6                 0.004   carbohydrate (N-acetylglucosamine 6-O) sulfotransfer...
CTR9                  0.004   SH2 domain binding protein 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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