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Search of human proteins with 71043622
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|71043622 hypothetical protein LOC200232 [Homo sapiens]
(171 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|71043622 hypothetical protein LOC200232 [Homo sapiens] 354 2e-98
gi|71043642 hypothetical protein LOC388799 [Homo sapiens] 310 5e-85
gi|192807292 keratin 24 [Homo sapiens] 29 1.7
gi|153791352 prostate, ovary, testis expressed protein on chromo... 29 1.7
gi|40807480 suppressor of cytokine signaling 4 [Homo sapiens] 28 3.0
gi|18254466 suppressor of cytokine signaling 4 [Homo sapiens] 28 3.0
gi|134133226 protein expressed in prostate, ovary, testis, and p... 28 5.0
gi|113413200 PREDICTED: similar to protein expressed in prostate... 28 5.0
gi|88953571 PREDICTED: similar to protein expressed in prostate,... 28 5.0
gi|50897294 POTE ankyrin domain family, member A isoform 1 [Homo... 27 6.6
gi|53828703 POTE ankyrin domain family, member A isoform 2 [Homo... 27 6.6
gi|122937345 myosin VB [Homo sapiens] 27 6.6
gi|27262638 sperm associated antigen 1 [Homo sapiens] 27 6.6
gi|148747437 Mob4B protein [Homo sapiens] 27 6.6
gi|27262636 sperm associated antigen 1 [Homo sapiens] 27 6.6
gi|157738609 HECT domain containing 3 [Homo sapiens] 27 8.6
gi|122937201 similar to zinc finger protein 709 [Homo sapiens] 27 8.6
>gi|71043622 hypothetical protein LOC200232 [Homo sapiens]
Length = 171
Score = 354 bits (908), Expect = 2e-98
Identities = 171/171 (100%), Positives = 171/171 (100%)
Query: 1 MWTLKSSLVLLLCLTCSYAFMFSSLRQKTSEPQGKVQYGEHFRIRQNLPEHTQGWLGSKW 60
MWTLKSSLVLLLCLTCSYAFMFSSLRQKTSEPQGKVQYGEHFRIRQNLPEHTQGWLGSKW
Sbjct: 1 MWTLKSSLVLLLCLTCSYAFMFSSLRQKTSEPQGKVQYGEHFRIRQNLPEHTQGWLGSKW 60
Query: 61 LWLLFVVVPFVILQCQRDSEKNKEQSPPGLRGGQLHSPLKKKRNASPNKDCAFNTLMELE 120
LWLLFVVVPFVILQCQRDSEKNKEQSPPGLRGGQLHSPLKKKRNASPNKDCAFNTLMELE
Sbjct: 61 LWLLFVVVPFVILQCQRDSEKNKEQSPPGLRGGQLHSPLKKKRNASPNKDCAFNTLMELE 120
Query: 121 VELMKFVSKVRNLKRAMATGSGSNLRLRKSEMPADPYHVTICEIWGEESSS 171
VELMKFVSKVRNLKRAMATGSGSNLRLRKSEMPADPYHVTICEIWGEESSS
Sbjct: 121 VELMKFVSKVRNLKRAMATGSGSNLRLRKSEMPADPYHVTICEIWGEESSS 171
>gi|71043642 hypothetical protein LOC388799 [Homo sapiens]
Length = 171
Score = 310 bits (793), Expect = 5e-85
Identities = 150/171 (87%), Positives = 158/171 (92%)
Query: 1 MWTLKSSLVLLLCLTCSYAFMFSSLRQKTSEPQGKVQYGEHFRIRQNLPEHTQGWLGSKW 60
MWTLKSSLVLLLCLTCSYAFMFSSLRQKTSEPQGKV GEHFRIRQNLPEHTQGWLGSKW
Sbjct: 1 MWTLKSSLVLLLCLTCSYAFMFSSLRQKTSEPQGKVPCGEHFRIRQNLPEHTQGWLGSKW 60
Query: 61 LWLLFVVVPFVILQCQRDSEKNKEQSPPGLRGGQLHSPLKKKRNASPNKDCAFNTLMELE 120
LWLLF VVPFVILQCQRDSEKNKEQSPPGLRG +PLKK +NAS KDC FNTL ELE
Sbjct: 61 LWLLFAVVPFVILQCQRDSEKNKEQSPPGLRGFPFRTPLKKNQNASLYKDCVFNTLNELE 120
Query: 121 VELMKFVSKVRNLKRAMATGSGSNLRLRKSEMPADPYHVTICEIWGEESSS 171
VEL+KFVS+V+NLK AMATGSGSNL+LR+SEMPADPYHVTIC+IWGEESSS
Sbjct: 121 VELLKFVSEVQNLKGAMATGSGSNLKLRRSEMPADPYHVTICKIWGEESSS 171
>gi|192807292 keratin 24 [Homo sapiens]
Length = 525
Score = 29.3 bits (64), Expect = 1.7
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 115 TLMELEVELMKFVSKVRNLKRAMA-TGSGSNLRLRKSEMPADPYHVTICEIWGE 167
TL LE+EL ++ +L+ +A T +G +L + + IC+IWGE
Sbjct: 367 TLQALEIELQSQLAMKSSLEGTLADTEAGYVAQLSEIQTQISALEEEICQIWGE 420
>gi|153791352 prostate, ovary, testis expressed protein on
chromosome 2 [Homo sapiens]
Length = 1075
Score = 29.3 bits (64), Expect = 1.7
Identities = 24/100 (24%), Positives = 40/100 (40%), Gaps = 12/100 (12%)
Query: 76 QRDSEKNKEQSPPGLRGGQLHSPLKKKRNASPNKDCAFNTLMELEVELMKFVSKVRNLKR 135
++D + E+ +G + P K + NKD E++ V + NL
Sbjct: 376 EQDLKLTSEEESQRFKGSENSQPEKMSQEPEINKDGDREVEEEMKKHESNNVGLLENLTN 435
Query: 136 AMATGSGSN--LRLRKSEMP---------ADPYHVTICEI 164
+ G+G N + RKS P ++ YH ICE+
Sbjct: 436 GVTAGNGDNGLIPQRKSRTPENQQFPDNESEEYH-RICEL 474
>gi|40807480 suppressor of cytokine signaling 4 [Homo sapiens]
Length = 440
Score = 28.5 bits (62), Expect = 3.0
Identities = 42/184 (22%), Positives = 69/184 (37%), Gaps = 44/184 (23%)
Query: 6 SSLVLLLCLTCSYAFMFSSLRQKTSEPQGKVQYGEHFRIRQNLPEHTQGW---------- 55
SS+ L L +C + F+ SL+QK + G+ F I+ H+ G
Sbjct: 72 SSIELDLDHSCGHRFLGRSLKQKLQD-----AVGQCFPIKNCSSRHSSGLPSKRKIHISE 126
Query: 56 -------------LGSKWLWLLFVVVPFVILQCQRDSEKNKEQSPPGLRGGQLHSPLKKK 102
L +W ++ P + + D + + S LR GQL K+
Sbjct: 127 LMLDKCPFPPRSDLAFRWHFIKRHTAP---INSKSDEWVSTDLSQTELRDGQL-----KR 178
Query: 103 RNASPNKDCAFNTLMELEVELMKFVSKVRNLKRAMATGSGSNL----RLRKSEMPADPYH 158
RN N +C +T V+ + + TGS NL + S+M +D
Sbjct: 179 RNMEENINCFSHT----NVQPCVITTDNALCREGPMTGSVMNLVSNNSIEDSDMDSDDEI 234
Query: 159 VTIC 162
+T+C
Sbjct: 235 LTLC 238
>gi|18254466 suppressor of cytokine signaling 4 [Homo sapiens]
Length = 440
Score = 28.5 bits (62), Expect = 3.0
Identities = 42/184 (22%), Positives = 69/184 (37%), Gaps = 44/184 (23%)
Query: 6 SSLVLLLCLTCSYAFMFSSLRQKTSEPQGKVQYGEHFRIRQNLPEHTQGW---------- 55
SS+ L L +C + F+ SL+QK + G+ F I+ H+ G
Sbjct: 72 SSIELDLDHSCGHRFLGRSLKQKLQD-----AVGQCFPIKNCSSRHSSGLPSKRKIHISE 126
Query: 56 -------------LGSKWLWLLFVVVPFVILQCQRDSEKNKEQSPPGLRGGQLHSPLKKK 102
L +W ++ P + + D + + S LR GQL K+
Sbjct: 127 LMLDKCPFPPRSDLAFRWHFIKRHTAP---INSKSDEWVSTDLSQTELRDGQL-----KR 178
Query: 103 RNASPNKDCAFNTLMELEVELMKFVSKVRNLKRAMATGSGSNL----RLRKSEMPADPYH 158
RN N +C +T V+ + + TGS NL + S+M +D
Sbjct: 179 RNMEENINCFSHT----NVQPCVITTDNALCREGPMTGSVMNLVSNNSIEDSDMDSDDEI 234
Query: 159 VTIC 162
+T+C
Sbjct: 235 LTLC 238
>gi|134133226 protein expressed in prostate, ovary, testis, and
placenta 2 [Homo sapiens]
Length = 1075
Score = 27.7 bits (60), Expect = 5.0
Identities = 23/100 (23%), Positives = 40/100 (40%), Gaps = 12/100 (12%)
Query: 76 QRDSEKNKEQSPPGLRGGQLHSPLKKKRNASPNKDCAFNTLMELEVELMKFVSKVRNLKR 135
+++ + E+ +G + P K + NKD E++ V + NL
Sbjct: 376 EQELKLTSEEESQRFKGSENSQPEKMSQELEINKDGDREVEEEMKKHESNNVGLLENLTN 435
Query: 136 AMATGSGSN--LRLRKSEMP---------ADPYHVTICEI 164
+ G+G N + RKS P ++ YH ICE+
Sbjct: 436 GVTAGNGDNGLIPQRKSRTPENQQFPDNESEEYH-RICEL 474
>gi|113413200 PREDICTED: similar to protein expressed in prostate,
ovary, testis, and placenta 2 [Homo sapiens]
Length = 1038
Score = 27.7 bits (60), Expect = 5.0
Identities = 23/100 (23%), Positives = 40/100 (40%), Gaps = 12/100 (12%)
Query: 76 QRDSEKNKEQSPPGLRGGQLHSPLKKKRNASPNKDCAFNTLMELEVELMKFVSKVRNLKR 135
++D + E+ +G + P K + NKD E++ V + NL
Sbjct: 339 EQDLKLTSEEESQRFKGSENSQPEKMSQEPEINKDGDREVEEEMKKHESNNVGLLENLSN 398
Query: 136 AMATGSGSN--LRLRKSEMP---------ADPYHVTICEI 164
+ G+G + + RKS P ++ YH ICE+
Sbjct: 399 GVTAGNGDDGLIPQRKSRTPENQQFPDNESEEYH-RICEL 437
>gi|88953571 PREDICTED: similar to protein expressed in prostate,
ovary, testis, and placenta 2 isoform 2 [Homo sapiens]
Length = 1075
Score = 27.7 bits (60), Expect = 5.0
Identities = 23/100 (23%), Positives = 40/100 (40%), Gaps = 12/100 (12%)
Query: 76 QRDSEKNKEQSPPGLRGGQLHSPLKKKRNASPNKDCAFNTLMELEVELMKFVSKVRNLKR 135
++D + E+ +G + P K + NKD E++ V + NL
Sbjct: 376 EQDLKLTSEEESQRFKGSENSQPEKMSQEPEINKDGDREVEEEMKKHESNNVGLLENLSN 435
Query: 136 AMATGSGSN--LRLRKSEMP---------ADPYHVTICEI 164
+ G+G + + RKS P ++ YH ICE+
Sbjct: 436 GVTAGNGDDGLIPQRKSRTPENQQFPDNESEEYH-RICEL 474
>gi|50897294 POTE ankyrin domain family, member A isoform 1 [Homo
sapiens]
Length = 452
Score = 27.3 bits (59), Expect = 6.6
Identities = 17/67 (25%), Positives = 27/67 (40%)
Query: 76 QRDSEKNKEQSPPGLRGGQLHSPLKKKRNASPNKDCAFNTLMELEVELMKFVSKVRNLKR 135
++D + E+ P L+G + K + NKDC E++ V NL
Sbjct: 256 EQDLKLTSEEEPQRLKGSENSQHEKVTQEPDINKDCDREVEEEMQKHGSNNVGLSENLTD 315
Query: 136 AMATGSG 142
A G+G
Sbjct: 316 GAAAGNG 322
>gi|53828703 POTE ankyrin domain family, member A isoform 2 [Homo
sapiens]
Length = 498
Score = 27.3 bits (59), Expect = 6.6
Identities = 17/67 (25%), Positives = 27/67 (40%)
Query: 76 QRDSEKNKEQSPPGLRGGQLHSPLKKKRNASPNKDCAFNTLMELEVELMKFVSKVRNLKR 135
++D + E+ P L+G + K + NKDC E++ V NL
Sbjct: 302 EQDLKLTSEEEPQRLKGSENSQHEKVTQEPDINKDCDREVEEEMQKHGSNNVGLSENLTD 361
Query: 136 AMATGSG 142
A G+G
Sbjct: 362 GAAAGNG 368
>gi|122937345 myosin VB [Homo sapiens]
Length = 1848
Score = 27.3 bits (59), Expect = 6.6
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 80 EKNKEQSPPGLRGGQLHSPLKKKRNASPNKDCAFNTL--MELEVELMKFVSKVRNLKRAM 137
EK ++Q ++ P + + PN D A+N+L ELE E K + + L++A+
Sbjct: 1168 EKREQQDSKKVQA----EPPQTDIDLDPNADLAYNSLKRQELESENKKLKNDLNELRKAV 1223
Query: 138 ATGSGSN 144
A + N
Sbjct: 1224 ADQATQN 1230
>gi|27262638 sperm associated antigen 1 [Homo sapiens]
Length = 926
Score = 27.3 bits (59), Expect = 6.6
Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 4/90 (4%)
Query: 72 ILQCQRDSEKNKEQSPPGLRGGQLHSPLKKKRNASPNKDCAFNTLMELEVELMKFVSKVR 131
I C R E + P LR + L++ A + + T+++++ L V
Sbjct: 507 IQDCNRALELHPFSMKPLLRRAMAYETLEQYGKAYVD----YKTVLQIDCGLQLANDSVN 562
Query: 132 NLKRAMATGSGSNLRLRKSEMPADPYHVTI 161
L R + G N R + S +PA P V +
Sbjct: 563 RLSRILMELDGPNWREKLSPIPAVPASVPL 592
>gi|148747437 Mob4B protein [Homo sapiens]
Length = 216
Score = 27.3 bits (59), Expect = 6.6
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 19 AFMFSSLRQKTSEPQGKVQYGEHFRIRQNLPEHTQGWLGS 58
+F+FSS KT +P+ + G H + L +H + LGS
Sbjct: 2 SFLFSSRSSKTFKPKKNIPEGSH---QYELLKHAEATLGS 38
>gi|27262636 sperm associated antigen 1 [Homo sapiens]
Length = 926
Score = 27.3 bits (59), Expect = 6.6
Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 4/90 (4%)
Query: 72 ILQCQRDSEKNKEQSPPGLRGGQLHSPLKKKRNASPNKDCAFNTLMELEVELMKFVSKVR 131
I C R E + P LR + L++ A + + T+++++ L V
Sbjct: 507 IQDCNRALELHPFSMKPLLRRAMAYETLEQYGKAYVD----YKTVLQIDCGLQLANDSVN 562
Query: 132 NLKRAMATGSGSNLRLRKSEMPADPYHVTI 161
L R + G N R + S +PA P V +
Sbjct: 563 RLSRILMELDGPNWREKLSPIPAVPASVPL 592
>gi|157738609 HECT domain containing 3 [Homo sapiens]
Length = 861
Score = 26.9 bits (58), Expect = 8.6
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Query: 50 EHTQGWLGS----KWLWLLFVVVPFVILQCQRDSEKNKEQSPPGLRGGQLHSPLKKKRNA 105
+HT G K LL P ++ QC RDSE +K P L ++ L + A
Sbjct: 430 DHTLGTFSEIKQVKQFLLLSRQRPGLVAQCLRDSESSKPSFMPRL---YINRRLAMEHRA 486
Query: 106 SPNKDCA 112
P++D A
Sbjct: 487 CPSRDPA 493
>gi|122937201 similar to zinc finger protein 709 [Homo sapiens]
Length = 578
Score = 26.9 bits (58), Expect = 8.6
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 6/53 (11%)
Query: 13 CLTCSYAFMFSSLRQKT------SEPQGKVQYGEHFRIRQNLPEHTQGWLGSK 59
C C AF +S+ QK +P G Q G+ FR+ L H + G K
Sbjct: 444 CKQCGKAFRSASVLQKHIRTHTGEKPYGCKQCGKVFRVASQLKMHERTHTGEK 496
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.132 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,277,680
Number of Sequences: 37866
Number of extensions: 311207
Number of successful extensions: 774
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 766
Number of HSP's gapped (non-prelim): 21
length of query: 171
length of database: 18,247,518
effective HSP length: 95
effective length of query: 76
effective length of database: 14,650,248
effective search space: 1113418848
effective search space used: 1113418848
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.