Guide to the Human Genome
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Name: CHID1 Sequence: fasta or formatted (393aa) NCBI GI: 218083182
Description:

chitinase domain containing 1 isoform a

Not currently referenced in the text

Other entries for this name:
alt mRNA {393aa} chitinase domain containing 1 isoform a
alt mRNA {393aa} chitinase domain containing 1 isoform a
alt prot {418aa} chitinase domain containing 1 isoform b
alt prot {362aa} chitinase domain containing 1 isoform c
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6         26           2
 C cysteine            0.8          3           1
 D aspartate           6.4         25           2
 E glutamate           5.1         20           2
 F phenylalanine       4.6         18           2
 G glycine             5.9         23           1
 H histidine           4.1         16           1
 I isoleucine          2.3          9           1
 K lysine              6.4         25           2
 L leucine            12.5         49           2
 M methionine          2.0          8           1
 N asparagine          1.8          7           1
 P proline             4.1         16           2
 Q glutamine           4.6         18           1
 R arginine            6.1         24           2
 S serine              6.9         27           1
 T threonine           5.1         20           2
 V valine              9.2         36           2
 W tryptophan          2.5         10           1
 Y tyrosine            3.3         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   chitinase domain containing 1 isoform a 
CHID1                 1.000   chitinase domain containing 1 isoform a 
CHID1                 1.000   chitinase domain containing 1 isoform a 
CHID1                 0.982   chitinase domain containing 1 isoform b 
CHID1                 0.902   chitinase domain containing 1 isoform c 
CHI3L2                0.013   chitinase 3-like 2 isoform c 
CHI3L2                0.013   chitinase 3-like 2 isoform b 
CHI3L2                0.013   chitinase 3-like 2 isoform a 
LOC100287742          0.010   PREDICTED: hypothetical protein XP_002343595 
DNAH14                0.009   dynein, axonemal, heavy polypeptide 14 isoform 1 [H...
CTBS                  0.008   chitobiase, di-N-acetyl- 
MYLK                  0.008   myosin light chain kinase isoform 3A 
MYLK                  0.008   myosin light chain kinase isoform 1 
MYLK                  0.008   myosin light chain kinase isoform 3B 
MYLK                  0.008   myosin light chain kinase isoform 2 
CHIT1                 0.006   chitotriosidase 
PRKG1                 0.006   protein kinase, cGMP-dependent, type I isoform 1 [H...
PRKG1                 0.006   protein kinase, cGMP-dependent, type I isoform 2 [Ho...
PRKCH                 0.006   protein kinase C, eta 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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