Search of human proteins with 66912194

Search of human proteins with 66912194

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|66912194 RAB3A interacting protein isoform A [Homo sapiens]
         (254 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|66912194 RAB3A interacting protein isoform A [Homo sapiens]        512   e-145
gi|41281856 RAB3A interacting protein isoform alpha 2 [Homo sapi...   512   e-145
gi|28274699 RAB3A interacting protein isoform alpha 1 [Homo sapi...   512   e-145
gi|41281862 RAB3A interacting protein isoform beta 2 [Homo sapiens]   340   5e-94
gi|41281871 RAB3A interacting protein isoform beta 1 [Homo sapiens]   340   5e-94
gi|21361440 RAB3A interacting protein (rabin3)-like 1 [Homo sapi...   287   7e-78
gi|48762700 GTF2I repeat domain containing 2 [Homo sapiens]            31   0.91 
gi|51241788 GTF2I repeat domain containing 2B [Homo sapiens]           31   0.91 
gi|6382071 diaphanous 2 isoform 12C [Homo sapiens]                     31   1.2  
gi|5803003 diaphanous 2 isoform 156 [Homo sapiens]                     31   1.2  
gi|133922600 splicing factor, arginine/serine-rich 16 [Homo sapi...    30   2.0  
gi|31542661 transmembrane protein 57 [Homo sapiens]                    30   2.7  
gi|126091040 myotonic dystrophy protein kinase isoform 4 [Homo s...    29   3.5  
gi|239751609 PREDICTED: hypothetical protein XP_002347928 [Homo ...    29   3.5  
gi|239746124 PREDICTED: hypothetical protein XP_002344195 [Homo ...    29   3.5  
gi|225543215 antigen identified by monoclonal antibody Ki-67 iso...    29   4.5  
gi|103472005 antigen identified by monoclonal antibody Ki-67 iso...    29   4.5  
gi|120587027 ubiquitin specific peptidase 31 [Homo sapiens]            29   4.5  
gi|116089325 splicing factor, arginine/serine-rich 12 isoform a ...    29   4.5  
gi|21040255 splicing factor, arginine/serine-rich 12 isoform b [...    29   4.5  
gi|4505939 DNA-directed RNA polymerase II A [Homo sapiens]             28   5.9  
gi|29171753 PTPRF interacting protein alpha 1 isoform a [Homo sa...    28   5.9  
gi|4505983 PTPRF interacting protein alpha 1 isoform b [Homo sap...    28   5.9  
gi|126091095 myotonic dystrophy protein kinase isoform 1 [Homo s...    28   7.7  
gi|126131093 myotonic dystrophy protein kinase isoform 3 [Homo s...    28   7.7  
gi|47059024 myotonic dystrophy protein kinase isoform 2 [Homo sa...    28   7.7  
gi|18640734 contactin associated protein-like 5 [Homo sapiens]         28   7.7  
gi|24430139 RNA polymerase II associated protein 1 [Homo sapiens]      28   7.7  
gi|94681063 bromodomain adjacent to zinc finger domain, 2B [Homo...    28   7.7  
gi|5453904 RAD51 associated protein 1 isoform b [Homo sapiens]         28   7.7  

>gi|66912194 RAB3A interacting protein isoform A [Homo sapiens]
          Length = 254

 Score =  512 bits (1318), Expect = e-145
 Identities = 254/254 (100%), Positives = 254/254 (100%)

Query: 1   MVREANIKQATAEKQLKEAQGKIDVLQAEVAALKTLVLSSSPTSPTQEPLPGGKTPFKKG 60
           MVREANIKQATAEKQLKEAQGKIDVLQAEVAALKTLVLSSSPTSPTQEPLPGGKTPFKKG
Sbjct: 1   MVREANIKQATAEKQLKEAQGKIDVLQAEVAALKTLVLSSSPTSPTQEPLPGGKTPFKKG 60

Query: 61  HTRNKSTSSAMSGSHQDLSVIQPIVKDCKEADLSLYNEFRLWKDEPTMDRTCPFLDKIYQ 120
           HTRNKSTSSAMSGSHQDLSVIQPIVKDCKEADLSLYNEFRLWKDEPTMDRTCPFLDKIYQ
Sbjct: 61  HTRNKSTSSAMSGSHQDLSVIQPIVKDCKEADLSLYNEFRLWKDEPTMDRTCPFLDKIYQ 120

Query: 121 EDIFPCLTFSKSELASAVLEAVENNTLSIEPVGLQPIRFVKASAVECGGPKKCALTGQSK 180
           EDIFPCLTFSKSELASAVLEAVENNTLSIEPVGLQPIRFVKASAVECGGPKKCALTGQSK
Sbjct: 121 EDIFPCLTFSKSELASAVLEAVENNTLSIEPVGLQPIRFVKASAVECGGPKKCALTGQSK 180

Query: 181 SCKHRIKLGDSSNYYYISPFCRYRITSVCNFFTYIRYIQQGLVKQQDVDQMFWEVMQLRK 240
           SCKHRIKLGDSSNYYYISPFCRYRITSVCNFFTYIRYIQQGLVKQQDVDQMFWEVMQLRK
Sbjct: 181 SCKHRIKLGDSSNYYYISPFCRYRITSVCNFFTYIRYIQQGLVKQQDVDQMFWEVMQLRK 240

Query: 241 EMSLAKLGYFKEEL 254
           EMSLAKLGYFKEEL
Sbjct: 241 EMSLAKLGYFKEEL 254


>gi|41281856 RAB3A interacting protein isoform alpha 2 [Homo
           sapiens]
          Length = 476

 Score =  512 bits (1318), Expect = e-145
 Identities = 254/254 (100%), Positives = 254/254 (100%)

Query: 1   MVREANIKQATAEKQLKEAQGKIDVLQAEVAALKTLVLSSSPTSPTQEPLPGGKTPFKKG 60
           MVREANIKQATAEKQLKEAQGKIDVLQAEVAALKTLVLSSSPTSPTQEPLPGGKTPFKKG
Sbjct: 223 MVREANIKQATAEKQLKEAQGKIDVLQAEVAALKTLVLSSSPTSPTQEPLPGGKTPFKKG 282

Query: 61  HTRNKSTSSAMSGSHQDLSVIQPIVKDCKEADLSLYNEFRLWKDEPTMDRTCPFLDKIYQ 120
           HTRNKSTSSAMSGSHQDLSVIQPIVKDCKEADLSLYNEFRLWKDEPTMDRTCPFLDKIYQ
Sbjct: 283 HTRNKSTSSAMSGSHQDLSVIQPIVKDCKEADLSLYNEFRLWKDEPTMDRTCPFLDKIYQ 342

Query: 121 EDIFPCLTFSKSELASAVLEAVENNTLSIEPVGLQPIRFVKASAVECGGPKKCALTGQSK 180
           EDIFPCLTFSKSELASAVLEAVENNTLSIEPVGLQPIRFVKASAVECGGPKKCALTGQSK
Sbjct: 343 EDIFPCLTFSKSELASAVLEAVENNTLSIEPVGLQPIRFVKASAVECGGPKKCALTGQSK 402

Query: 181 SCKHRIKLGDSSNYYYISPFCRYRITSVCNFFTYIRYIQQGLVKQQDVDQMFWEVMQLRK 240
           SCKHRIKLGDSSNYYYISPFCRYRITSVCNFFTYIRYIQQGLVKQQDVDQMFWEVMQLRK
Sbjct: 403 SCKHRIKLGDSSNYYYISPFCRYRITSVCNFFTYIRYIQQGLVKQQDVDQMFWEVMQLRK 462

Query: 241 EMSLAKLGYFKEEL 254
           EMSLAKLGYFKEEL
Sbjct: 463 EMSLAKLGYFKEEL 476


>gi|28274699 RAB3A interacting protein isoform alpha 1 [Homo
           sapiens]
          Length = 460

 Score =  512 bits (1318), Expect = e-145
 Identities = 254/254 (100%), Positives = 254/254 (100%)

Query: 1   MVREANIKQATAEKQLKEAQGKIDVLQAEVAALKTLVLSSSPTSPTQEPLPGGKTPFKKG 60
           MVREANIKQATAEKQLKEAQGKIDVLQAEVAALKTLVLSSSPTSPTQEPLPGGKTPFKKG
Sbjct: 207 MVREANIKQATAEKQLKEAQGKIDVLQAEVAALKTLVLSSSPTSPTQEPLPGGKTPFKKG 266

Query: 61  HTRNKSTSSAMSGSHQDLSVIQPIVKDCKEADLSLYNEFRLWKDEPTMDRTCPFLDKIYQ 120
           HTRNKSTSSAMSGSHQDLSVIQPIVKDCKEADLSLYNEFRLWKDEPTMDRTCPFLDKIYQ
Sbjct: 267 HTRNKSTSSAMSGSHQDLSVIQPIVKDCKEADLSLYNEFRLWKDEPTMDRTCPFLDKIYQ 326

Query: 121 EDIFPCLTFSKSELASAVLEAVENNTLSIEPVGLQPIRFVKASAVECGGPKKCALTGQSK 180
           EDIFPCLTFSKSELASAVLEAVENNTLSIEPVGLQPIRFVKASAVECGGPKKCALTGQSK
Sbjct: 327 EDIFPCLTFSKSELASAVLEAVENNTLSIEPVGLQPIRFVKASAVECGGPKKCALTGQSK 386

Query: 181 SCKHRIKLGDSSNYYYISPFCRYRITSVCNFFTYIRYIQQGLVKQQDVDQMFWEVMQLRK 240
           SCKHRIKLGDSSNYYYISPFCRYRITSVCNFFTYIRYIQQGLVKQQDVDQMFWEVMQLRK
Sbjct: 387 SCKHRIKLGDSSNYYYISPFCRYRITSVCNFFTYIRYIQQGLVKQQDVDQMFWEVMQLRK 446

Query: 241 EMSLAKLGYFKEEL 254
           EMSLAKLGYFKEEL
Sbjct: 447 EMSLAKLGYFKEEL 460


>gi|41281862 RAB3A interacting protein isoform beta 2 [Homo sapiens]
          Length = 411

 Score =  340 bits (873), Expect = 5e-94
 Identities = 171/171 (100%), Positives = 171/171 (100%)

Query: 1   MVREANIKQATAEKQLKEAQGKIDVLQAEVAALKTLVLSSSPTSPTQEPLPGGKTPFKKG 60
           MVREANIKQATAEKQLKEAQGKIDVLQAEVAALKTLVLSSSPTSPTQEPLPGGKTPFKKG
Sbjct: 223 MVREANIKQATAEKQLKEAQGKIDVLQAEVAALKTLVLSSSPTSPTQEPLPGGKTPFKKG 282

Query: 61  HTRNKSTSSAMSGSHQDLSVIQPIVKDCKEADLSLYNEFRLWKDEPTMDRTCPFLDKIYQ 120
           HTRNKSTSSAMSGSHQDLSVIQPIVKDCKEADLSLYNEFRLWKDEPTMDRTCPFLDKIYQ
Sbjct: 283 HTRNKSTSSAMSGSHQDLSVIQPIVKDCKEADLSLYNEFRLWKDEPTMDRTCPFLDKIYQ 342

Query: 121 EDIFPCLTFSKSELASAVLEAVENNTLSIEPVGLQPIRFVKASAVECGGPK 171
           EDIFPCLTFSKSELASAVLEAVENNTLSIEPVGLQPIRFVKASAVECGGPK
Sbjct: 343 EDIFPCLTFSKSELASAVLEAVENNTLSIEPVGLQPIRFVKASAVECGGPK 393


>gi|41281871 RAB3A interacting protein isoform beta 1 [Homo sapiens]
          Length = 395

 Score =  340 bits (873), Expect = 5e-94
 Identities = 171/171 (100%), Positives = 171/171 (100%)

Query: 1   MVREANIKQATAEKQLKEAQGKIDVLQAEVAALKTLVLSSSPTSPTQEPLPGGKTPFKKG 60
           MVREANIKQATAEKQLKEAQGKIDVLQAEVAALKTLVLSSSPTSPTQEPLPGGKTPFKKG
Sbjct: 207 MVREANIKQATAEKQLKEAQGKIDVLQAEVAALKTLVLSSSPTSPTQEPLPGGKTPFKKG 266

Query: 61  HTRNKSTSSAMSGSHQDLSVIQPIVKDCKEADLSLYNEFRLWKDEPTMDRTCPFLDKIYQ 120
           HTRNKSTSSAMSGSHQDLSVIQPIVKDCKEADLSLYNEFRLWKDEPTMDRTCPFLDKIYQ
Sbjct: 267 HTRNKSTSSAMSGSHQDLSVIQPIVKDCKEADLSLYNEFRLWKDEPTMDRTCPFLDKIYQ 326

Query: 121 EDIFPCLTFSKSELASAVLEAVENNTLSIEPVGLQPIRFVKASAVECGGPK 171
           EDIFPCLTFSKSELASAVLEAVENNTLSIEPVGLQPIRFVKASAVECGGPK
Sbjct: 327 EDIFPCLTFSKSELASAVLEAVENNTLSIEPVGLQPIRFVKASAVECGGPK 377


>gi|21361440 RAB3A interacting protein (rabin3)-like 1 [Homo
           sapiens]
          Length = 382

 Score =  287 bits (734), Expect = 7e-78
 Identities = 146/259 (56%), Positives = 196/259 (75%), Gaps = 8/259 (3%)

Query: 1   MVREANIKQATAEKQLKEAQGKIDVLQAEVAALKTLVLSSSPTSPTQEPLPGGKTPFK-- 58
           MVREAN+KQA +EKQLKEA+GKID+LQAEV ALKTLV++S+P SP +E  P   +P K  
Sbjct: 125 MVREANMKQAASEKQLKEARGKIDMLQAEVTALKTLVITSTPASPNRELHPQLLSPTKAG 184

Query: 59  --KGHTRNKSTSSAMSGSHQDLS--VIQPIVKDCKEADLSLYNEFRLWKDEPTMDRTCPF 114
             KGH+R+KSTSS +  +    +   + P  ++ KE D  L+ EF+ W++ PT+D+TCPF
Sbjct: 185 PRKGHSRHKSTSSTLCPAVCPAAGHTLTPD-REGKEVDTILFAEFQAWRESPTLDKTCPF 243

Query: 115 LDKIYQEDIFPCLTFSKSELASAVLEAVENNTLSIEPVGLQPIRFVKASAVECGGPKKCA 174
           L+++Y+ED+ PCL F+  EL+  V  AVE+NTL+IEPV  Q +  VK + V+C     CA
Sbjct: 244 LERVYREDVGPCLDFTMQELSVLVRAAVEDNTLTIEPVASQTLPTVKVAEVDCSSTNTCA 303

Query: 175 LTGQSKSCKHRIKLGDSSNYYYISPFCRYRITSVCNFFTYIRYIQQGLVKQQDVDQMFWE 234
           L+G +++C+HRI+LGDS ++YYISP  R RIT+VCNFFTYIRYIQQGLV+ QD + MFWE
Sbjct: 304 LSGLTRTCRHRIRLGDSKSHYYISPSSRARITAVCNFFTYIRYIQQGLVR-QDAEPMFWE 362

Query: 235 VMQLRKEMSLAKLGYFKEE 253
           +M+LRKEMSLAKLG+F +E
Sbjct: 363 IMRLRKEMSLAKLGFFPQE 381


>gi|48762700 GTF2I repeat domain containing 2 [Homo sapiens]
          Length = 949

 Score = 31.2 bits (69), Expect = 0.91
 Identities = 19/78 (24%), Positives = 44/78 (56%), Gaps = 2/78 (2%)

Query: 29  EVAALKTLVLSSSPTSPTQEPLPGGKTPFK-KGHTRNKSTSSAMSGSHQDLSVIQPIVKD 87
           EV  ++  +  S+P  P++EP    +   K +G+T + S +++ +G  +DL+++Q  V D
Sbjct: 259 EVIEMELPMEDSTPLVPSEEPNEDPEAEVKIEGNTNSSSVTNSAAGV-EDLNIVQVTVPD 317

Query: 88  CKEADLSLYNEFRLWKDE 105
            ++  LS   + +  +++
Sbjct: 318 NEKERLSSIEKIKQLREQ 335


>gi|51241788 GTF2I repeat domain containing 2B [Homo sapiens]
          Length = 949

 Score = 31.2 bits (69), Expect = 0.91
 Identities = 19/78 (24%), Positives = 44/78 (56%), Gaps = 2/78 (2%)

Query: 29  EVAALKTLVLSSSPTSPTQEPLPGGKTPFK-KGHTRNKSTSSAMSGSHQDLSVIQPIVKD 87
           EV  ++  +  S+P  P++EP    +   K +G+T + S +++ +G  +DL+++Q  V D
Sbjct: 259 EVIEMELPMEDSTPLVPSEEPNEDPEAEVKIEGNTNSSSVTNSAAGV-EDLNIVQVTVPD 317

Query: 88  CKEADLSLYNEFRLWKDE 105
            ++  LS   + +  +++
Sbjct: 318 NEKERLSSIEKIKQLREQ 335


>gi|6382071 diaphanous 2 isoform 12C [Homo sapiens]
          Length = 1096

 Score = 30.8 bits (68), Expect = 1.2
 Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 5/50 (10%)

Query: 12  AEKQLKEAQGKIDVLQAEVAALKT--LVLSSS---PTSPTQEPLPGGKTP 56
           A+ +L++   KI  L+AE+  L+T   VLSSS   P  P   PLPG   P
Sbjct: 514 AQAELQKRDEKIKELEAEIQQLRTQAQVLSSSSGIPGPPAAPPLPGVGPP 563


>gi|5803003 diaphanous 2 isoform 156 [Homo sapiens]
          Length = 1101

 Score = 30.8 bits (68), Expect = 1.2
 Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 5/50 (10%)

Query: 12  AEKQLKEAQGKIDVLQAEVAALKT--LVLSSS---PTSPTQEPLPGGKTP 56
           A+ +L++   KI  L+AE+  L+T   VLSSS   P  P   PLPG   P
Sbjct: 514 AQAELQKRDEKIKELEAEIQQLRTQAQVLSSSSGIPGPPAAPPLPGVGPP 563


>gi|133922600 splicing factor, arginine/serine-rich 16 [Homo
           sapiens]
          Length = 674

 Score = 30.0 bits (66), Expect = 2.0
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%)

Query: 28  AEVAALKTLVLSSSPTSPTQEPLPGGKTPFKKGHTRNKSTSSAMSGS 74
           A  AA  + V +  P +P   P PGG  P +    R +S+SS+ S S
Sbjct: 342 AAAAAAASGVTTGKPPAP---PQPGGPAPGRNASARRRSSSSSSSSS 385


>gi|31542661 transmembrane protein 57 [Homo sapiens]
          Length = 664

 Score = 29.6 bits (65), Expect = 2.7
 Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 19/85 (22%)

Query: 12  AEKQLKEAQGKI--------DVLQ--AEVAALKTLVLSSSPTSPTQEPLPGGKTPFKKGH 61
           A++QL+ AQG+I        D+ Q  AEV A+   +  S+ TSP     P         H
Sbjct: 589 AKRQLEIAQGQILQKDQEIKDLKQKIAEVMAVMPSITYSAATSPLSPVSP---------H 639

Query: 62  TRNKSTSSAMSGSHQDLSVIQPIVK 86
             +K   ++ SG   + SV QP+ K
Sbjct: 640 YSSKFVETSPSGLDPNASVYQPLKK 664


>gi|126091040 myotonic dystrophy protein kinase isoform 4 [Homo
           sapiens]
          Length = 625

 Score = 29.3 bits (64), Expect = 3.5
 Identities = 16/50 (32%), Positives = 25/50 (50%)

Query: 2   VREANIKQATAEKQLKEAQGKIDVLQAEVAALKTLVLSSSPTSPTQEPLP 51
           +REA  +    E  +++ Q ++++LQAE A   T V S   T P     P
Sbjct: 498 LREAEARNRDLEAHVRQLQERMELLQAEGATAVTGVPSPRATDPPSHMAP 547


>gi|239751609 PREDICTED: hypothetical protein XP_002347928 [Homo
           sapiens]
          Length = 120

 Score = 29.3 bits (64), Expect = 3.5
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 3/55 (5%)

Query: 160 VKASAVECGGPKKCALTGQSKSCKHRIKLGDSSNYYYISPFCRYRITSVCNFFTY 214
           VK       G +K  L+G  +S ++     D  N+  I P C  +    C +FTY
Sbjct: 31  VKREHTRASGIRKAVLSGPGQSAENET---DQVNFREIPPRCYPKHAKACIYFTY 82


>gi|239746124 PREDICTED: hypothetical protein XP_002344195 [Homo
           sapiens]
          Length = 120

 Score = 29.3 bits (64), Expect = 3.5
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 3/55 (5%)

Query: 160 VKASAVECGGPKKCALTGQSKSCKHRIKLGDSSNYYYISPFCRYRITSVCNFFTY 214
           VK       G +K  L+G  +S ++     D  N+  I P C  +    C +FTY
Sbjct: 31  VKREHTRASGIRKAVLSGPGQSAENET---DQVNFREIPPRCYPKHAKACIYFTY 82


>gi|225543215 antigen identified by monoclonal antibody Ki-67 isoform
            2 [Homo sapiens]
          Length = 2896

 Score = 28.9 bits (63), Expect = 4.5
 Identities = 31/130 (23%), Positives = 58/130 (44%), Gaps = 8/130 (6%)

Query: 10   ATAEKQLKEAQGKIDVLQAEVAALKTLVLSSSPTSPTQEPLPGGKT--PFKKGHTRNKST 67
            A+++++LK + GK+ V +  +A  K    S   T    EP   GK+   F +   +   +
Sbjct: 1267 ASSKRRLKTSLGKVGVKEELLAVGKLTQTSGETTHTHTEPTGDGKSMKAFMESPKQILDS 1326

Query: 68   SSAMSGSHQDLSVIQPIVKDCKEADLS----LYNEFRLWKDEPTMDRTCPFLDKIYQEDI 123
            +++++GS + L    P  K     DL+    L+      K+  T ++T     +  Q D+
Sbjct: 1327 AASLTGSKRQLRT--PKGKSEVPEDLAGFIELFQTPSHTKESMTNEKTTKVSYRASQPDL 1384

Query: 124  FPCLTFSKSE 133
                T SK +
Sbjct: 1385 VDTPTSSKPQ 1394


>gi|103472005 antigen identified by monoclonal antibody Ki-67 isoform
            1 [Homo sapiens]
          Length = 3256

 Score = 28.9 bits (63), Expect = 4.5
 Identities = 31/130 (23%), Positives = 58/130 (44%), Gaps = 8/130 (6%)

Query: 10   ATAEKQLKEAQGKIDVLQAEVAALKTLVLSSSPTSPTQEPLPGGKT--PFKKGHTRNKST 67
            A+++++LK + GK+ V +  +A  K    S   T    EP   GK+   F +   +   +
Sbjct: 1627 ASSKRRLKTSLGKVGVKEELLAVGKLTQTSGETTHTHTEPTGDGKSMKAFMESPKQILDS 1686

Query: 68   SSAMSGSHQDLSVIQPIVKDCKEADLS----LYNEFRLWKDEPTMDRTCPFLDKIYQEDI 123
            +++++GS + L    P  K     DL+    L+      K+  T ++T     +  Q D+
Sbjct: 1687 AASLTGSKRQLRT--PKGKSEVPEDLAGFIELFQTPSHTKESMTNEKTTKVSYRASQPDL 1744

Query: 124  FPCLTFSKSE 133
                T SK +
Sbjct: 1745 VDTPTSSKPQ 1754


>gi|120587027 ubiquitin specific peptidase 31 [Homo sapiens]
          Length = 1352

 Score = 28.9 bits (63), Expect = 4.5
 Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 6/81 (7%)

Query: 4    EANIKQATAEKQLKEAQGKIDVLQAEVAALKTLVLSSSPTSPTQEPLPGGKTPFKKGHTR 63
            E+  K++ + K   E +  +   +  +A+ ++ + S+SP+S    PLP  K   K   +R
Sbjct: 1020 ESTTKRSPSSKGTSEPEKSLRKGRPALASQESSLSSTSPSS----PLP-VKVSLKPSRSR 1074

Query: 64   NKSTSSAM-SGSHQDLSVIQP 83
            +K+ SS+  SG H   +  QP
Sbjct: 1075 SKADSSSRGSGRHSSPAPAQP 1095


>gi|116089325 splicing factor, arginine/serine-rich 12 isoform a
           [Homo sapiens]
          Length = 624

 Score = 28.9 bits (63), Expect = 4.5
 Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 9/79 (11%)

Query: 1   MVREANIKQATAEKQLKEAQGKIDVLQAEVAALKTLVLSSSPTSPTQEPLPGGKTPFKKG 60
           +V+   +    A K+L+E   ++   Q+ ++A      +  P S       GG++   + 
Sbjct: 260 IVKPPEMTPQAAAKELEEVMKRVREAQSFISA------AIEPESGKSNERKGGRS---RS 310

Query: 61  HTRNKSTSSAMSGSHQDLS 79
           HTR+KS SS+ S S +  S
Sbjct: 311 HTRSKSRSSSKSHSRRKRS 329


>gi|21040255 splicing factor, arginine/serine-rich 12 isoform b
           [Homo sapiens]
          Length = 508

 Score = 28.9 bits (63), Expect = 4.5
 Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 9/79 (11%)

Query: 1   MVREANIKQATAEKQLKEAQGKIDVLQAEVAALKTLVLSSSPTSPTQEPLPGGKTPFKKG 60
           +V+   +    A K+L+E   ++   Q+ ++A      +  P S       GG++   + 
Sbjct: 144 IVKPPEMTPQAAAKELEEVMKRVREAQSFISA------AIEPESGKSNERKGGRS---RS 194

Query: 61  HTRNKSTSSAMSGSHQDLS 79
           HTR+KS SS+ S S +  S
Sbjct: 195 HTRSKSRSSSKSHSRRKRS 213


>gi|4505939 DNA-directed RNA polymerase II A [Homo sapiens]
          Length = 1970

 Score = 28.5 bits (62), Expect = 5.9
 Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 39   SSSPTSPTQEP-LPGGKTPFKKGHTRNKSTSSAMSGSHQDLS 79
            S SPTSP  EP  PGG TP    ++    + S  S S+   S
Sbjct: 1592 SYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTS 1633


>gi|29171753 PTPRF interacting protein alpha 1 isoform a [Homo
           sapiens]
          Length = 1185

 Score = 28.5 bits (62), Expect = 5.9
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 7/68 (10%)

Query: 11  TAEKQLKEAQG-------KIDVLQAEVAALKTLVLSSSPTSPTQEPLPGGKTPFKKGHTR 63
           +A+KQL+E Q         I+ L+AE+  ++    S     P    +P  + P   GHT 
Sbjct: 485 SAKKQLEETQHDKDQLVLNIEALRAELDHMRLRGASLHHGRPHLGSVPDFRFPMADGHTD 544

Query: 64  NKSTSSAM 71
           + STS+ +
Sbjct: 545 SYSTSAVL 552


>gi|4505983 PTPRF interacting protein alpha 1 isoform b [Homo
           sapiens]
          Length = 1202

 Score = 28.5 bits (62), Expect = 5.9
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 7/68 (10%)

Query: 11  TAEKQLKEAQG-------KIDVLQAEVAALKTLVLSSSPTSPTQEPLPGGKTPFKKGHTR 63
           +A+KQL+E Q         I+ L+AE+  ++    S     P    +P  + P   GHT 
Sbjct: 485 SAKKQLEETQHDKDQLVLNIEALRAELDHMRLRGASLHHGRPHLGSVPDFRFPMADGHTD 544

Query: 64  NKSTSSAM 71
           + STS+ +
Sbjct: 545 SYSTSAVL 552


>gi|126091095 myotonic dystrophy protein kinase isoform 1 [Homo
           sapiens]
          Length = 639

 Score = 28.1 bits (61), Expect = 7.7
 Identities = 15/44 (34%), Positives = 24/44 (54%)

Query: 2   VREANIKQATAEKQLKEAQGKIDVLQAEVAALKTLVLSSSPTSP 45
           +REA  +    E  +++ Q ++++LQAE A   T V S   T P
Sbjct: 513 LREAEARNRDLEAHVRQLQERMELLQAEGATAVTGVPSPRATDP 556


>gi|126131093 myotonic dystrophy protein kinase isoform 3 [Homo
           sapiens]
          Length = 624

 Score = 28.1 bits (61), Expect = 7.7
 Identities = 15/44 (34%), Positives = 24/44 (54%)

Query: 2   VREANIKQATAEKQLKEAQGKIDVLQAEVAALKTLVLSSSPTSP 45
           +REA  +    E  +++ Q ++++LQAE A   T V S   T P
Sbjct: 498 LREAEARNRDLEAHVRQLQERMELLQAEGATAVTGVPSPRATDP 541


>gi|47059024 myotonic dystrophy protein kinase isoform 2 [Homo
           sapiens]
          Length = 629

 Score = 28.1 bits (61), Expect = 7.7
 Identities = 15/44 (34%), Positives = 24/44 (54%)

Query: 2   VREANIKQATAEKQLKEAQGKIDVLQAEVAALKTLVLSSSPTSP 45
           +REA  +    E  +++ Q ++++LQAE A   T V S   T P
Sbjct: 503 LREAEARNRDLEAHVRQLQERMELLQAEGATAVTGVPSPRATDP 546


>gi|18640734 contactin associated protein-like 5 [Homo sapiens]
          Length = 1306

 Score = 28.1 bits (61), Expect = 7.7
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 6/64 (9%)

Query: 163  SAVECGGPKKCALTGQ----SKSC--KHRIKLGDSSNYYYISPFCRYRITSVCNFFTYIR 216
            S V  G P  C+  G        C  KH   L D +N  Y  PFC+  +++V    T + 
Sbjct: 950  SGVRPGCPGHCSSYGSICHNGGKCVEKHNGYLCDCTNSPYEGPFCKKEVSAVFEAGTSVT 1009

Query: 217  YIQQ 220
            Y+ Q
Sbjct: 1010 YMFQ 1013


>gi|24430139 RNA polymerase II associated protein 1 [Homo sapiens]
          Length = 1393

 Score = 28.1 bits (61), Expect = 7.7
 Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 9/89 (10%)

Query: 38  LSSSPTSPTQEPLPGGKTPFKKGHTRNKSTSSAMSGSHQ-----DLSVIQPIVKDCKEAD 92
           ++S  T  TQ  L  G TP     T + S  +++S +        +S +QP+V+ C    
Sbjct: 722 IASLLTLLTQLTLAAGSTP---AETISDSAEASLSATPSLVTWTQVSGLQPLVEPCLRQT 778

Query: 93  LSLYNEFRLWKDEPTMDRTC-PFLDKIYQ 120
           L L +   +W+    +   C  FL   YQ
Sbjct: 779 LKLLSRPEMWRAVGPVPVACLLFLGAYYQ 807


>gi|94681063 bromodomain adjacent to zinc finger domain, 2B [Homo
           sapiens]
          Length = 2168

 Score = 28.1 bits (61), Expect = 7.7
 Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 12/87 (13%)

Query: 15  QLKEAQGKIDVLQAEVAALKTLVLSSSPTSPTQEPLPGGKTPFKKGHTRNKSTSSAMSGS 74
           QLK+ +    + +   A       SSSP  P Q        PF          ++A+ G+
Sbjct: 441 QLKKQESSKSLKKVIAALSNPKATSSSPAHPKQTLENNHPNPF---------LTNALLGN 491

Query: 75  HQDLSVIQPIVKDCKEADLSLYNEFRL 101
           HQ   VIQ ++   +EA L+L  + ++
Sbjct: 492 HQPNGVIQSVI---QEAPLALTTKTKM 515


>gi|5453904 RAD51 associated protein 1 isoform b [Homo sapiens]
          Length = 335

 Score = 28.1 bits (61), Expect = 7.7
 Identities = 23/119 (19%), Positives = 46/119 (38%)

Query: 45  PTQEPLPGGKTPFKKGHTRNKSTSSAMSGSHQDLSVIQPIVKDCKEADLSLYNEFRLWKD 104
           P +   P   + F    + +   S+ +  + +  +  + + +D  + +L+   +  +   
Sbjct: 4   PVRHKKPVNYSQFDHSDSDDDFVSATVPLNKKSRTAPKELKQDKPKPNLNNLRKEEIPVQ 63

Query: 105 EPTMDRTCPFLDKIYQEDIFPCLTFSKSELASAVLEAVENNTLSIEPVGLQPIRFVKAS 163
           E T  +     DK+YQ D+   L  S  EL +       +   SIE  G   I  +  S
Sbjct: 64  EKTPKKRMALDDKLYQRDLEVALALSVKELPTVTTNVQNSQDKSIEKHGSSKIETMNKS 122


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.132    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,353,736
Number of Sequences: 37866
Number of extensions: 402634
Number of successful extensions: 1621
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1601
Number of HSP's gapped (non-prelim): 58
length of query: 254
length of database: 18,247,518
effective HSP length: 100
effective length of query: 154
effective length of database: 14,460,918
effective search space: 2226981372
effective search space used: 2226981372
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.