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Search of human proteins with 6681762
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|6681762 general transcription factor IIH, polypeptide 2,
44kD subunit [Homo sapiens]
(395 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|6681762 general transcription factor IIH, polypeptide 2, 44kD... 821 0.0
gi|148922900 general transcription factor IIH, polypeptide 2B [H... 818 0.0
gi|148922852 general transcription factor IIH, polypeptide 2C [H... 817 0.0
gi|109809737 general transcription factor IIH, polypeptide 2D [H... 817 0.0
gi|5292161 proteasome 26S non-ATPase subunit 4 [Homo sapiens] 42 0.001
gi|91718902 myeloid/lymphoid or mixed-lineage leukemia 3 [Homo s... 34 0.26
gi|7662424 zinc finger protein 510 [Homo sapiens] 33 0.45
gi|32698748 zinc finger protein 248 [Homo sapiens] 33 0.59
gi|7705495 zinc finger protein 581 [Homo sapiens] 32 0.76
gi|68160937 tripartite motif-containing 25 [Homo sapiens] 32 1.00
gi|194018469 zinc finger protein 546 [Homo sapiens] 32 1.00
gi|11968019 p53 target zinc finger protein isoform 1 [Homo sapiens] 32 1.3
gi|23199978 p53 target zinc finger protein isoform 2 [Homo sapiens] 32 1.3
gi|208431793 dynactin 4 (p62) isoform a [Homo sapiens] 32 1.3
gi|7705893 dynactin 4 (p62) isoform b [Homo sapiens] 32 1.3
gi|124301196 sodium channel, nonvoltage-gated 1, beta [Homo sapi... 31 1.7
gi|190194429 zinc finger protein 267 [Homo sapiens] 31 2.2
gi|28274686 zinc finger protein 82 homolog [Homo sapiens] 30 2.9
gi|29788755 SET binding factor 2 [Homo sapiens] 30 2.9
gi|24308227 zinc finger protein 687 [Homo sapiens] 30 2.9
gi|55741659 zinc finger protein 14-like [Homo sapiens] 30 2.9
gi|157426898 tripartite motif-containing 10 isoform 1 [Homo sapi... 30 3.8
gi|157426896 tripartite motif-containing 10 isoform 2 [Homo sapi... 30 3.8
gi|158186614 transmembrane protein 118 isoform 1 [Homo sapiens] 30 5.0
gi|5032281 dystrophin Dp427c isoform [Homo sapiens] 29 6.5
gi|5032315 dystrophin Dp427p2 isoform [Homo sapiens] 29 6.5
gi|5032287 dystrophin Dp427p1 isoform [Homo sapiens] 29 6.5
gi|208431815 protein tyrosine phosphatase, receptor type, K isof... 29 6.5
gi|18860902 protein tyrosine phosphatase, receptor type, K isofo... 29 6.5
gi|156616290 collagen type VI alpha 6 [Homo sapiens] 29 6.5
>gi|6681762 general transcription factor IIH, polypeptide 2, 44kD
subunit [Homo sapiens]
Length = 395
Score = 821 bits (2120), Expect = 0.0
Identities = 395/395 (100%), Positives = 395/395 (100%)
Query: 1 MDEEPERTKRWEGGYERTWEILKEDESGSLKATIEDILFKAKRKRVFEHHGQVRLGMMRH 60
MDEEPERTKRWEGGYERTWEILKEDESGSLKATIEDILFKAKRKRVFEHHGQVRLGMMRH
Sbjct: 1 MDEEPERTKRWEGGYERTWEILKEDESGSLKATIEDILFKAKRKRVFEHHGQVRLGMMRH 60
Query: 61 LYVVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTEL 120
LYVVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTEL
Sbjct: 61 LYVVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTEL 120
Query: 121 SGNPRKHITSLKKAVDMTCHGEPSLYNSLSIAMQTLKHMPGHTSREVLIIFSSLTTCDPS 180
SGNPRKHITSLKKAVDMTCHGEPSLYNSLSIAMQTLKHMPGHTSREVLIIFSSLTTCDPS
Sbjct: 121 SGNPRKHITSLKKAVDMTCHGEPSLYNSLSIAMQTLKHMPGHTSREVLIIFSSLTTCDPS 180
Query: 181 NIYDLIKTLKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHVSPPP 240
NIYDLIKTLKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHVSPPP
Sbjct: 181 NIYDLIKTLKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHVSPPP 240
Query: 241 ASSSSECSLIRMGFPQHTIASLSDQDAKPSFSMAHLDGNTEPGLTLGGYFCPQCRAKYCE 300
ASSSSECSLIRMGFPQHTIASLSDQDAKPSFSMAHLDGNTEPGLTLGGYFCPQCRAKYCE
Sbjct: 241 ASSSSECSLIRMGFPQHTIASLSDQDAKPSFSMAHLDGNTEPGLTLGGYFCPQCRAKYCE 300
Query: 301 LPVECKICGLTLVSAPHLARSYHHLFPLDAFQEIPLEEYNGERFCYGCQGELKDQHVYVC 360
LPVECKICGLTLVSAPHLARSYHHLFPLDAFQEIPLEEYNGERFCYGCQGELKDQHVYVC
Sbjct: 301 LPVECKICGLTLVSAPHLARSYHHLFPLDAFQEIPLEEYNGERFCYGCQGELKDQHVYVC 360
Query: 361 AVCQNVFCVDCDVFVHDSLHCCPGCIHKIPAPSGV 395
AVCQNVFCVDCDVFVHDSLHCCPGCIHKIPAPSGV
Sbjct: 361 AVCQNVFCVDCDVFVHDSLHCCPGCIHKIPAPSGV 395
>gi|148922900 general transcription factor IIH, polypeptide 2B [Homo
sapiens]
Length = 395
Score = 818 bits (2112), Expect = 0.0
Identities = 393/395 (99%), Positives = 394/395 (99%)
Query: 1 MDEEPERTKRWEGGYERTWEILKEDESGSLKATIEDILFKAKRKRVFEHHGQVRLGMMRH 60
MDEEPERTKRWEGGYERTWEILKEDESGSLKATIEDILFKAKRKRVFEHHGQVRLGMMRH
Sbjct: 1 MDEEPERTKRWEGGYERTWEILKEDESGSLKATIEDILFKAKRKRVFEHHGQVRLGMMRH 60
Query: 61 LYVVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTEL 120
LYVVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTEL
Sbjct: 61 LYVVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTEL 120
Query: 121 SGNPRKHITSLKKAVDMTCHGEPSLYNSLSIAMQTLKHMPGHTSREVLIIFSSLTTCDPS 180
SGNPRKHITSLKKAVDMTCHGEPSLYNSLS+AMQTLKHMPGHTSREVLIIFSSLTTCDPS
Sbjct: 121 SGNPRKHITSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPS 180
Query: 181 NIYDLIKTLKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHVSPPP 240
NIYDLIKTLKAAKIRVSV GLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHVSPPP
Sbjct: 181 NIYDLIKTLKAAKIRVSVTGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHVSPPP 240
Query: 241 ASSSSECSLIRMGFPQHTIASLSDQDAKPSFSMAHLDGNTEPGLTLGGYFCPQCRAKYCE 300
ASSSSECSLIRMGFPQHTIASLSDQDAKPSFSMAHLDGNTEPGLTLGGYFCPQCRAKYCE
Sbjct: 241 ASSSSECSLIRMGFPQHTIASLSDQDAKPSFSMAHLDGNTEPGLTLGGYFCPQCRAKYCE 300
Query: 301 LPVECKICGLTLVSAPHLARSYHHLFPLDAFQEIPLEEYNGERFCYGCQGELKDQHVYVC 360
LPVECKICGLTLVSAPHLARSYHHLFPLDAFQEIPLEEYNGERFCYGCQGELKDQHVYVC
Sbjct: 301 LPVECKICGLTLVSAPHLARSYHHLFPLDAFQEIPLEEYNGERFCYGCQGELKDQHVYVC 360
Query: 361 AVCQNVFCVDCDVFVHDSLHCCPGCIHKIPAPSGV 395
AVCQNVFCVDCDVFVHDSLHCCPGCIHKIPAPSGV
Sbjct: 361 AVCQNVFCVDCDVFVHDSLHCCPGCIHKIPAPSGV 395
>gi|148922852 general transcription factor IIH, polypeptide 2C [Homo
sapiens]
Length = 395
Score = 817 bits (2110), Expect = 0.0
Identities = 392/395 (99%), Positives = 395/395 (100%)
Query: 1 MDEEPERTKRWEGGYERTWEILKEDESGSLKATIEDILFKAKRKRVFEHHGQVRLGMMRH 60
MDEEPERTKRWEGGYERTWEILKEDESGSLKATIEDILFKAKRKRVFEHHGQVRLGMMRH
Sbjct: 1 MDEEPERTKRWEGGYERTWEILKEDESGSLKATIEDILFKAKRKRVFEHHGQVRLGMMRH 60
Query: 61 LYVVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTEL 120
LYVVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTEL
Sbjct: 61 LYVVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTEL 120
Query: 121 SGNPRKHITSLKKAVDMTCHGEPSLYNSLSIAMQTLKHMPGHTSREVLIIFSSLTTCDPS 180
SGNPRKHITSLK+AVDMTCHGEPSLYNSLS+AMQTLKHMPGHTSREVLIIFSSLTTCDPS
Sbjct: 121 SGNPRKHITSLKEAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPS 180
Query: 181 NIYDLIKTLKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHVSPPP 240
NIYDLIKTLKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHH+SPPP
Sbjct: 181 NIYDLIKTLKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHLSPPP 240
Query: 241 ASSSSECSLIRMGFPQHTIASLSDQDAKPSFSMAHLDGNTEPGLTLGGYFCPQCRAKYCE 300
ASSSSECSLIRMGFPQHTIASLSDQDAKPSFSMAHLDGNTEPGLTLGGYFCPQCRAKYCE
Sbjct: 241 ASSSSECSLIRMGFPQHTIASLSDQDAKPSFSMAHLDGNTEPGLTLGGYFCPQCRAKYCE 300
Query: 301 LPVECKICGLTLVSAPHLARSYHHLFPLDAFQEIPLEEYNGERFCYGCQGELKDQHVYVC 360
LPVECKICGLTLVSAPHLARSYHHLFPLDAFQEIPLEEYNGERFCYGCQGELKDQHVYVC
Sbjct: 301 LPVECKICGLTLVSAPHLARSYHHLFPLDAFQEIPLEEYNGERFCYGCQGELKDQHVYVC 360
Query: 361 AVCQNVFCVDCDVFVHDSLHCCPGCIHKIPAPSGV 395
AVCQNVFCVDCDVFVHDSLHCCPGCIHKIPAPSGV
Sbjct: 361 AVCQNVFCVDCDVFVHDSLHCCPGCIHKIPAPSGV 395
>gi|109809737 general transcription factor IIH, polypeptide 2D [Homo
sapiens]
Length = 395
Score = 817 bits (2110), Expect = 0.0
Identities = 392/395 (99%), Positives = 395/395 (100%)
Query: 1 MDEEPERTKRWEGGYERTWEILKEDESGSLKATIEDILFKAKRKRVFEHHGQVRLGMMRH 60
MDEEPERTKRWEGGYERTWEILKEDESGSLKATIEDILFKAKRKRVFEHHGQVRLGMMRH
Sbjct: 1 MDEEPERTKRWEGGYERTWEILKEDESGSLKATIEDILFKAKRKRVFEHHGQVRLGMMRH 60
Query: 61 LYVVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTEL 120
LYVVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTEL
Sbjct: 61 LYVVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTEL 120
Query: 121 SGNPRKHITSLKKAVDMTCHGEPSLYNSLSIAMQTLKHMPGHTSREVLIIFSSLTTCDPS 180
SGNPRKHITSLK+AVDMTCHGEPSLYNSLS+AMQTLKHMPGHTSREVLIIFSSLTTCDPS
Sbjct: 121 SGNPRKHITSLKEAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPS 180
Query: 181 NIYDLIKTLKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHVSPPP 240
NIYDLIKTLKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHH+SPPP
Sbjct: 181 NIYDLIKTLKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHLSPPP 240
Query: 241 ASSSSECSLIRMGFPQHTIASLSDQDAKPSFSMAHLDGNTEPGLTLGGYFCPQCRAKYCE 300
ASSSSECSLIRMGFPQHTIASLSDQDAKPSFSMAHLDGNTEPGLTLGGYFCPQCRAKYCE
Sbjct: 241 ASSSSECSLIRMGFPQHTIASLSDQDAKPSFSMAHLDGNTEPGLTLGGYFCPQCRAKYCE 300
Query: 301 LPVECKICGLTLVSAPHLARSYHHLFPLDAFQEIPLEEYNGERFCYGCQGELKDQHVYVC 360
LPVECKICGLTLVSAPHLARSYHHLFPLDAFQEIPLEEYNGERFCYGCQGELKDQHVYVC
Sbjct: 301 LPVECKICGLTLVSAPHLARSYHHLFPLDAFQEIPLEEYNGERFCYGCQGELKDQHVYVC 360
Query: 361 AVCQNVFCVDCDVFVHDSLHCCPGCIHKIPAPSGV 395
AVCQNVFCVDCDVFVHDSLHCCPGCIHKIPAPSGV
Sbjct: 361 AVCQNVFCVDCDVFVHDSLHCCPGCIHKIPAPSGV 395
>gi|5292161 proteasome 26S non-ATPase subunit 4 [Homo sapiens]
Length = 377
Score = 41.6 bits (96), Expect = 0.001
Identities = 37/143 (25%), Positives = 58/143 (40%), Gaps = 5/143 (3%)
Query: 63 VVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 122
V VD S M + D P RL + NP + +G+I T + E LT L+
Sbjct: 8 VCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLI-TLANDCEVLTTLTP 66
Query: 123 NPRKHITSLKKAVDMTCHGEPSLYNSLSIAMQTLKHMPGHTSREVLIIF-SSLTTCDPSN 181
+ + L K + G+ + + +A LKH G + +I F S + +
Sbjct: 67 DTGR---ILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVEDNEKD 123
Query: 182 IYDLIKTLKAAKIRVSVIGLSAE 204
+ L K LK K+ V +I E
Sbjct: 124 LVKLAKRLKKEKVNVDIINFGEE 146
>gi|91718902 myeloid/lymphoid or mixed-lineage leukemia 3 [Homo
sapiens]
Length = 4911
Score = 33.9 bits (76), Expect = 0.26
Identities = 40/181 (22%), Positives = 59/181 (32%), Gaps = 23/181 (12%)
Query: 224 DESHYKELLTHHVSPPPASSSSECSLIRMGFPQHTIASLSDQDAKPSFSMAHLDGNTEPG 283
D SH L H+ P S + + P + + LD P
Sbjct: 319 DFSHIFLLCPEHIDQAPERSKEDANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTP- 377
Query: 284 LTLGGYFCPQCRAKYCELPVECKICG--LTLVSAPHLARSYHHLFPLDAFQEIPLEEYNG 341
L G+ CP+C K C+ CK G ++ + YH + +P +
Sbjct: 378 LKRAGWQCPEC--KVCQ---NCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKC 432
Query: 342 E--RFCYGCQGELKDQHVYVCAVCQNVF------CVDCDVFVH-----DSLHC--CPGCI 386
+ R C C Q + C +C N + C C H D LHC C +
Sbjct: 433 KNCRICIECGTRSSSQWHHNCLICDNCYQQQDNLCPFCGKCYHPELQKDMLHCNMCKRWV 492
Query: 387 H 387
H
Sbjct: 493 H 493
>gi|7662424 zinc finger protein 510 [Homo sapiens]
Length = 683
Score = 33.1 bits (74), Expect = 0.45
Identities = 37/179 (20%), Positives = 58/179 (32%), Gaps = 15/179 (8%)
Query: 156 LKHMPGHTSREVLIIFSSLTTCDPSNIYDLIKTLKAAK-IRVSVIGLSAEVRVCTVLARE 214
+KH HT CD ++D +T K + ++ G S E +
Sbjct: 270 VKHNSSHTGETSSKDDEFRKNCDKKTLFDHRRTGTGKKHLHLNQCGKSFEKSTVEEYNKL 329
Query: 215 TGGTYHVILDESHYKELLTHHVSPPPASSSSECSLIRMGFPQHTIASLSDQDAKPSFSMA 274
G H L+ S H++ P + E L+ Q + S + K S+ +
Sbjct: 330 NMGIKHYELNPSGNNFNRKAHLTDPQTAVIEENPLVSNDRTQTWVKSSEYHENKKSYQTS 389
Query: 275 HLDGNTEPGLTLGGYFCPQCRAKYC--------------ELPVECKICGLTLVSAPHLA 319
+ Y C +C +C E P EC CG T HL+
Sbjct: 390 VHRVRRRSHSMMKPYKCNECGKSFCQKGHLIQHQRTHTGEKPFECSECGKTFSQKSHLS 448
>gi|32698748 zinc finger protein 248 [Homo sapiens]
Length = 579
Score = 32.7 bits (73), Expect = 0.59
Identities = 28/112 (25%), Positives = 38/112 (33%), Gaps = 25/112 (22%)
Query: 289 YFCPQCRAKYC--------------ELPVECKICGLTLVSAPHLARSYHHLFPLDAFQEI 334
Y C +C +C E P ECK CG T +L E
Sbjct: 408 YECTECGKAFCQKPHLTNHQRTHTGEKPYECKQCGKTFCVKSNLTEHQR-----THTGEK 462
Query: 335 PLE-EYNGERFCYGC-----QGELKDQHVYVCAVCQNVFCVDCDVFVHDSLH 380
P E G+ FC+ Q + ++C C FCV ++ VH H
Sbjct: 463 PYECNACGKSFCHRSALTVHQRTHTGEKPFICNECGKSFCVKSNLIVHQRTH 514
>gi|7705495 zinc finger protein 581 [Homo sapiens]
Length = 197
Score = 32.3 bits (72), Expect = 0.76
Identities = 31/107 (28%), Positives = 37/107 (34%), Gaps = 21/107 (19%)
Query: 237 SPPPASSSSECSLIRMGFPQHTIASLSDQDAKPSFSMAHLDGNTEPGLTLGG-----YFC 291
SP P SSS S P+ L D P + + EPG + Y C
Sbjct: 30 SPEPGPSSSIGSPQASSPPRPNHYLLIDTQGVPYTVLVDEESQREPGASGAPGQKKCYSC 89
Query: 292 PQCRAKYCEL--------------PVECKICGLTLVSAPHLARSYHH 324
P C + + P EC ICG A HLAR HH
Sbjct: 90 PVCSRVFEYMSYLQRHSITHSEVKPFECDICGKAFKRASHLAR--HH 134
>gi|68160937 tripartite motif-containing 25 [Homo sapiens]
Length = 630
Score = 32.0 bits (71), Expect = 1.00
Identities = 24/80 (30%), Positives = 26/80 (32%)
Query: 289 YFCPQCRAKYCELPVECKICGLTLVSAPHLARSYHHLFPLDAFQEIPLEEYNGERFCYGC 348
Y CPQCRA Y P K L V L P D + C
Sbjct: 48 YLCPQCRAVYQARPQLHKNTVLCNVVEQFLQADLAREPPADVWTPPARASAPSPNAQVAC 107
Query: 349 QGELKDQHVYVCAVCQNVFC 368
LK+ V C VC FC
Sbjct: 108 DHCLKEAAVKTCLVCMASFC 127
>gi|194018469 zinc finger protein 546 [Homo sapiens]
Length = 836
Score = 32.0 bits (71), Expect = 1.00
Identities = 27/96 (28%), Positives = 32/96 (33%), Gaps = 29/96 (30%)
Query: 300 ELPVECKICGLTLVSAPHLARSYHHLFPLDAFQEIPLEEYNGER--FCYGC------QGE 351
E+P ECK CG T S HL + Y + GE+ C C QGE
Sbjct: 494 EIPYECKECGKTFSSRYHLTQHY--------------RIHTGEKPYICNECGKAFRLQGE 539
Query: 352 LKDQH-------VYVCAVCQNVFCVDCDVFVHDSLH 380
L H Y C C F H +H
Sbjct: 540 LTRHHRIHTCEKPYECKECGKAFIHSNQFISHQRIH 575
Score = 32.0 bits (71), Expect = 1.00
Identities = 26/96 (27%), Positives = 35/96 (36%), Gaps = 29/96 (30%)
Query: 300 ELPVECKICGLTLVSAPHLARSYHHLFPLDAFQEIPLEEYNGER--FCYGC------QGE 351
ELP ECK CG T HL + + + GE+ C C Q E
Sbjct: 718 ELPYECKECGKTFSRRYHLTQHF--------------RLHTGEKPYSCKECGNAFRLQAE 763
Query: 352 LKDQHV-------YVCAVCQNVFCVDCDVFVHDSLH 380
L H+ Y C C F V+ ++ H +H
Sbjct: 764 LTRHHIVHTGEKPYKCKECGKAFSVNSELTRHHRIH 799
>gi|11968019 p53 target zinc finger protein isoform 1 [Homo sapiens]
Length = 289
Score = 31.6 bits (70), Expect = 1.3
Identities = 28/92 (30%), Positives = 35/92 (38%), Gaps = 5/92 (5%)
Query: 231 LLTHHVSPPPASSSSECSLIRMGFPQHTIASLSDQDAKPSFSMAHLDGNTEPGLTLGGYF 290
LL H V PPP S M + +L KP A L E L+ GG
Sbjct: 3 LLQHAVLPPPKQPSPSPP---MSVATRSTGTLQLPPQKPFGQEASLPLAGEEELSKGGE- 58
Query: 291 CPQCRAKYCELPVECKICGLTLVSAPHLARSY 322
C + P+ CK+C +TL SA Y
Sbjct: 59 -QDCALEELCKPLYCKLCNVTLNSAQQAQAHY 89
>gi|23199978 p53 target zinc finger protein isoform 2 [Homo sapiens]
Length = 288
Score = 31.6 bits (70), Expect = 1.3
Identities = 28/92 (30%), Positives = 35/92 (38%), Gaps = 5/92 (5%)
Query: 231 LLTHHVSPPPASSSSECSLIRMGFPQHTIASLSDQDAKPSFSMAHLDGNTEPGLTLGGYF 290
LL H V PPP S M + +L KP A L E L+ GG
Sbjct: 3 LLQHAVLPPPKQPSPSPP---MSVATRSTGTLQLPPQKPFGQEASLPLAGEEELSKGGE- 58
Query: 291 CPQCRAKYCELPVECKICGLTLVSAPHLARSY 322
C + P+ CK+C +TL SA Y
Sbjct: 59 -QDCALEELCKPLYCKLCNVTLNSAQQAQAHY 89
>gi|208431793 dynactin 4 (p62) isoform a [Homo sapiens]
Length = 467
Score = 31.6 bits (70), Expect = 1.3
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Query: 342 ERFCYGCQGELKDQ----HVYVCAVCQNVFCVDCDVFVHDSLHCCPGCIHKIPA 391
+R Y QGE K + +Y C C + ++C DS H CP C+ +P+
Sbjct: 8 DRVLYLVQGEKKVRAPLSQLYFCRYCSELRSLECVSHEVDS-HYCPSCLENMPS 60
>gi|7705893 dynactin 4 (p62) isoform b [Homo sapiens]
Length = 460
Score = 31.6 bits (70), Expect = 1.3
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Query: 342 ERFCYGCQGELKDQ----HVYVCAVCQNVFCVDCDVFVHDSLHCCPGCIHKIPA 391
+R Y QGE K + +Y C C + ++C DS H CP C+ +P+
Sbjct: 8 DRVLYLVQGEKKVRAPLSQLYFCRYCSELRSLECVSHEVDS-HYCPSCLENMPS 60
>gi|124301196 sodium channel, nonvoltage-gated 1, beta [Homo
sapiens]
Length = 640
Score = 31.2 bits (69), Expect = 1.7
Identities = 31/157 (19%), Positives = 55/157 (35%), Gaps = 15/157 (9%)
Query: 205 VRVCTVLARETGGTYHVILDESHYKELLTHHVSPPPASSSSECSLIRMGFPQHTIASLSD 264
V +C + H++ D E + + P S ++ + HT L D
Sbjct: 95 VTICNASPFKYSKIKHLLKDLDELMEAVLERILAPELSHANATRNLNFSIWNHTPLVLID 154
Query: 265 QDAKPSFSMAHLDGNTEPGLTLGGYFCPQCRAKYCELPVECKICGL--------TLVSAP 316
+ + L G+ GLT C A C++ + ++C L SA
Sbjct: 155 ERNPHHPMVLDLFGDNHNGLTSSSASEKICNAHGCKMAM--RLCSLNRTQCTFRNFTSAT 212
Query: 317 HLARSYHHLFPLDAFQEIPLEE-----YNGERFCYGC 348
++ L + F ++P +E Y GE+ C
Sbjct: 213 QALTEWYILQATNIFAQVPQQELVEMSYPGEQMILAC 249
>gi|190194429 zinc finger protein 267 [Homo sapiens]
Length = 743
Score = 30.8 bits (68), Expect = 2.2
Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 13/89 (14%)
Query: 300 ELPVECKICGLTLVSAPHLARSYHHLFPLDAFQEIPLE-EYNGERFCYGCQGELKDQ--- 355
E P +C+ CG +L + HL + H + P + E P + + G+ F C L Q
Sbjct: 319 EKPYKCEKCGDSLNHSLHLTQ--HQIIPTE---EKPYKWKECGKVFNLNCSLYLTKQQQI 373
Query: 356 ----HVYVCAVCQNVFCVDCDVFVHDSLH 380
++Y C C F ++ VH +H
Sbjct: 374 DTGENLYKCKACSKSFTRSSNLIVHQRIH 402
Score = 29.3 bits (64), Expect = 6.5
Identities = 24/96 (25%), Positives = 30/96 (31%), Gaps = 29/96 (30%)
Query: 300 ELPVECKICGLTLVSAPHLARSYHHLFPLDAFQEIPLEEYNGER--FCYGCQGELKD--- 354
E P +CK CG + HL R HH + GE+ C C D
Sbjct: 545 EKPYKCKECGKAFPYSSHLIR--HHRI------------HTGEKPYKCKACSKSFSDSSG 590
Query: 355 ----------QHVYVCAVCQNVFCVDCDVFVHDSLH 380
+ Y C C F DV H +H
Sbjct: 591 LTVHRRTHTGEKPYTCKECGKAFSYSSDVIQHRRIH 626
>gi|28274686 zinc finger protein 82 homolog [Homo sapiens]
Length = 532
Score = 30.4 bits (67), Expect = 2.9
Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 9/86 (10%)
Query: 300 ELPVECKICGLTLVSAPHLARSYHHLFPLDAFQEIPLEEYNGERFCYGCQGEL-KDQHV- 357
E P ECK CG+ HL R L + +++ + GE F G + + H+
Sbjct: 195 EKPYECKECGMAFRQTAHLTRHQR----LHSGEKLYECKECGEAFICGADLRVHQKMHIG 250
Query: 358 ---YVCAVCQNVFCVDCDVFVHDSLH 380
Y C C F V + +H +H
Sbjct: 251 EKPYECKECGKAFRVRGQLTLHQRIH 276
>gi|29788755 SET binding factor 2 [Homo sapiens]
Length = 1849
Score = 30.4 bits (67), Expect = 2.9
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
Query: 71 MEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG--NPRKHI 128
+E + LKPN +LK +Y++EE P S +++T + ++L+G PR
Sbjct: 1563 LEIEALKPNVNVSSLKKWDYYIEETLSTGP-SYDWMMLTPKHFPSEDSDLAGEAGPRSQR 1621
Query: 129 TSLKKAVDMTCHGEPSLYNSLSIAMQTLKH 158
++ D +P SL ++ L+H
Sbjct: 1622 RTVWPCYDDVSCTQPDALTSLFSEIEKLEH 1651
>gi|24308227 zinc finger protein 687 [Homo sapiens]
Length = 1237
Score = 30.4 bits (67), Expect = 2.9
Identities = 26/120 (21%), Positives = 37/120 (30%), Gaps = 34/120 (28%)
Query: 288 GYFCPQC--------------RAKYCELPVECKICGLTLVSAPHLARSYHHLFPLDAFQE 333
GY CP C + +CE+ +C IC + S P + P Q+
Sbjct: 763 GYRCPSCSVVFGGVNSIKSHIQTSHCEVFHKCPICPMAFKSGPSAHAHLYSQHPSFQTQQ 822
Query: 334 IPLEEYNGERFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHCCPGCIHKIPAPS 393
L +Y CA+C VF + H H P + PS
Sbjct: 823 AKL--------------------IYKCAMCDTVFTHKPLLSSHFDQHLLPQRVSVFKCPS 862
>gi|55741659 zinc finger protein 14-like [Homo sapiens]
Length = 533
Score = 30.4 bits (67), Expect = 2.9
Identities = 25/88 (28%), Positives = 35/88 (39%), Gaps = 13/88 (14%)
Query: 300 ELPVECKICGLTLVSAPHLARSYHHLFPLDAFQEIPLEEYNGERFCYGCQGELK------ 353
E P ECK CG T HL R + L + E + G+ F C +L+
Sbjct: 281 EKPYECKDCGKTFRQCTHLTR-HQRLHTAEKLYEC---KECGKAFV--CGPDLRVHQKIH 334
Query: 354 -DQHVYVCAVCQNVFCVDCDVFVHDSLH 380
+ Y C C F + + VH S+H
Sbjct: 335 FGEKPYECKECGKAFRICQQLTVHQSIH 362
>gi|157426898 tripartite motif-containing 10 isoform 1 [Homo
sapiens]
Length = 481
Score = 30.0 bits (66), Expect = 3.8
Identities = 28/128 (21%), Positives = 44/128 (34%), Gaps = 30/128 (23%)
Query: 287 GGYFCPQCRAKYCELP-------VECKICGLTLVSAP-----HLARSYHHLFPLDAFQEI 334
G FC C +YCE+P C +C LA ++ L +
Sbjct: 32 GHNFCRACLTRYCEIPGPDLEESPTCPLCKEPFRPGSFRPNWQLANVVENIERLQLVSTL 91
Query: 335 PLEE-----YNGERFCYGCQGELKDQHVYVCAVCQNV---------FCVDCDVFVHDSLH 380
L E +GE+ + C+ D + +C VC+ F D + +H
Sbjct: 92 GLGEEDVCQEHGEKIYFFCE----DDEMQLCVVCREAGEHATHTMRFLEDAAAPYREQIH 147
Query: 381 CCPGCIHK 388
C C+ K
Sbjct: 148 KCLKCLRK 155
>gi|157426896 tripartite motif-containing 10 isoform 2 [Homo
sapiens]
Length = 395
Score = 30.0 bits (66), Expect = 3.8
Identities = 28/128 (21%), Positives = 44/128 (34%), Gaps = 30/128 (23%)
Query: 287 GGYFCPQCRAKYCELP-------VECKICGLTLVSAP-----HLARSYHHLFPLDAFQEI 334
G FC C +YCE+P C +C LA ++ L +
Sbjct: 32 GHNFCRACLTRYCEIPGPDLEESPTCPLCKEPFRPGSFRPNWQLANVVENIERLQLVSTL 91
Query: 335 PLEE-----YNGERFCYGCQGELKDQHVYVCAVCQNV---------FCVDCDVFVHDSLH 380
L E +GE+ + C+ D + +C VC+ F D + +H
Sbjct: 92 GLGEEDVCQEHGEKIYFFCE----DDEMQLCVVCREAGEHATHTMRFLEDAAAPYREQIH 147
Query: 381 CCPGCIHK 388
C C+ K
Sbjct: 148 KCLKCLRK 155
>gi|158186614 transmembrane protein 118 isoform 1 [Homo sapiens]
Length = 444
Score = 29.6 bits (65), Expect = 5.0
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 345 CYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHCCPGC 385
C CQ E ++ + +C Q+VFC +C D CP C
Sbjct: 384 CAICQAEFREPLILLC---QHVFCEECLCLWLDRERTCPLC 421
>gi|5032281 dystrophin Dp427c isoform [Homo sapiens]
Length = 3677
Score = 29.3 bits (64), Expect = 6.5
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 1 MDEEPERTKRWEGGYERTWEILKEDESGSLKATIEDILFKAKRKRVFEH---HGQVRLGM 57
MD + ++ K +T E ++ E L +ED+ + ++ +V + QVR+
Sbjct: 442 MDLQNQKLKELNDWLTKTEERTRKMEEEPLGPDLEDLKRQVQQHKVLQEDLEQEQVRVNS 501
Query: 58 MRHLYVVVDGS 68
+ H+ VVVD S
Sbjct: 502 LTHMVVVVDES 512
>gi|5032315 dystrophin Dp427p2 isoform [Homo sapiens]
Length = 3562
Score = 29.3 bits (64), Expect = 6.5
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 1 MDEEPERTKRWEGGYERTWEILKEDESGSLKATIEDILFKAKRKRVFEH---HGQVRLGM 57
MD + ++ K +T E ++ E L +ED+ + ++ +V + QVR+
Sbjct: 327 MDLQNQKLKELNDWLTKTEERTRKMEEEPLGPDLEDLKRQVQQHKVLQEDLEQEQVRVNS 386
Query: 58 MRHLYVVVDGS 68
+ H+ VVVD S
Sbjct: 387 LTHMVVVVDES 397
>gi|5032287 dystrophin Dp427p1 isoform [Homo sapiens]
Length = 3681
Score = 29.3 bits (64), Expect = 6.5
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 1 MDEEPERTKRWEGGYERTWEILKEDESGSLKATIEDILFKAKRKRVFEH---HGQVRLGM 57
MD + ++ K +T E ++ E L +ED+ + ++ +V + QVR+
Sbjct: 446 MDLQNQKLKELNDWLTKTEERTRKMEEEPLGPDLEDLKRQVQQHKVLQEDLEQEQVRVNS 505
Query: 58 MRHLYVVVDGS 68
+ H+ VVVD S
Sbjct: 506 LTHMVVVVDES 516
>gi|208431815 protein tyrosine phosphatase, receptor type, K isoform
a [Homo sapiens]
Length = 1446
Score = 29.3 bits (64), Expect = 6.5
Identities = 14/41 (34%), Positives = 25/41 (60%)
Query: 106 IIVTKSKRAEKLTELSGNPRKHITSLKKAVDMTCHGEPSLY 146
+IV KSK A+K + GN R+ +T + A+D + + +L+
Sbjct: 773 LIVKKSKLAKKRKDAMGNTRQEMTHMVNAMDRSYADQSTLH 813
>gi|18860902 protein tyrosine phosphatase, receptor type, K isoform
b [Homo sapiens]
Length = 1440
Score = 29.3 bits (64), Expect = 6.5
Identities = 14/41 (34%), Positives = 25/41 (60%)
Query: 106 IIVTKSKRAEKLTELSGNPRKHITSLKKAVDMTCHGEPSLY 146
+IV KSK A+K + GN R+ +T + A+D + + +L+
Sbjct: 773 LIVKKSKLAKKRKDAMGNTRQEMTHMVNAMDRSYADQSTLH 813
>gi|156616290 collagen type VI alpha 6 [Homo sapiens]
Length = 2263
Score = 29.3 bits (64), Expect = 6.5
Identities = 36/169 (21%), Positives = 68/169 (40%), Gaps = 10/169 (5%)
Query: 61 LYVVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTEL 120
L +D SR + +Q+ + + + + V E + P+ I++ + A L
Sbjct: 1758 LVFALDHSRDVTEQEFERMKEMMAFLVRDIKVRE--NSCPVGAHIAILSYNSHARHLVRF 1815
Query: 121 SGNPRKHITSLKKAVDMTCHGEPSLYNSLSIAMQTLKH------MPGHTSREVLIIFSSL 174
S +K + L + ++ + S + AM+ + +PG +R++ FSS
Sbjct: 1816 SDAYKK--SQLLREIETIPYERSSASREIGRAMRFISRNVFKRTLPGAHTRKIATFFSSG 1873
Query: 175 TTCDPSNIYDLIKTLKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVIL 223
+ D +I A +I VI S V A + GT+ VI+
Sbjct: 1874 QSADAHSITTAAMEFGALEIIPVVITFSNVPSVRRAFAIDDTGTFQVIV 1922
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.136 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,783,461
Number of Sequences: 37866
Number of extensions: 779999
Number of successful extensions: 3680
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 3619
Number of HSP's gapped (non-prelim): 91
length of query: 395
length of database: 18,247,518
effective HSP length: 104
effective length of query: 291
effective length of database: 14,309,454
effective search space: 4164051114
effective search space used: 4164051114
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.