Search of human proteins with 63029941

Search of human proteins with 63029941

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|63029941 H2A histone family, member B1 [Homo sapiens]
         (115 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|63029941 H2A histone family, member B1 [Homo sapiens]              226   4e-60
gi|63029943 H2A histone family, member B2 [Homo sapiens]              222   6e-59
gi|63029935 H2A histone family, member B3 [Homo sapiens]              222   6e-59
gi|4504253 H2A histone family, member X [Homo sapiens]                 95   1e-20
gi|4504245 histone cluster 1, H2ac [Homo sapiens]                      92   7e-20
gi|28195394 histone cluster 2, H2ab [Homo sapiens]                     92   7e-20
gi|106775678 histone cluster 2, H2aa4 [Homo sapiens]                   92   1e-19
gi|24638446 histone cluster 2, H2ac [Homo sapiens]                     92   1e-19
gi|4504251 histone cluster 2, H2aa3 [Homo sapiens]                     92   1e-19
gi|29553970 H2A histone family, member J [Homo sapiens]                91   2e-19
gi|10800132 histone cluster 1, H2ag [Homo sapiens]                     91   2e-19
gi|4504239 histone cluster 1, H2ai [Homo sapiens]                      91   2e-19
gi|18105045 histone cluster 1, H2ah [Homo sapiens]                     91   2e-19
gi|4504241 histone cluster 1, H2ak [Homo sapiens]                      91   2e-19
gi|25092737 histone cluster 1, H2aa [Homo sapiens]                     91   2e-19
gi|15617199 histone cluster 3, H2a [Homo sapiens]                      91   2e-19
gi|4504249 histone cluster 1, H2am [Homo sapiens]                      91   2e-19
gi|4504243 histone cluster 1, H2al [Homo sapiens]                      91   2e-19
gi|10800144 histone cluster 1, H2aj [Homo sapiens]                     91   2e-19
gi|19557656 histone cluster 1, H2ab [Homo sapiens]                     90   3e-19
gi|10645195 histone cluster 1, H2ae [Homo sapiens]                     90   3e-19
gi|10800130 histone cluster 1, H2ad [Homo sapiens]                     90   3e-19
gi|4758496 H2A histone family, member Y isoform 2 [Homo sapiens]       71   2e-13
gi|93141020 H2A histone family, member Y isoform 2 [Homo sapiens]      71   2e-13
gi|93141018 H2A histone family, member Y isoform 3 [Homo sapiens]      71   2e-13
gi|20336746 H2A histone family, member Y isoform 1 [Homo sapiens]      71   2e-13
gi|8923920 H2A histone family, member Y2 [Homo sapiens]                70   3e-13
gi|20357599 H2A histone family, member V isoform 2 [Homo sapiens]      64   2e-11
gi|6912616 H2A histone family, member V isoform 1 [Homo sapiens]       64   3e-11
gi|4504255 H2A histone family, member Z [Homo sapiens]                 64   3e-11

>gi|63029941 H2A histone family, member B1 [Homo sapiens]
          Length = 115

 Score =  226 bits (575), Expect = 4e-60
 Identities = 115/115 (100%), Positives = 115/115 (100%)

Query: 1   MPRRRRRRGSSGAGGRGRTCSRTVRAELSFSVSQVERSLREGHYAQRLSRTAPVYLAAVI 60
           MPRRRRRRGSSGAGGRGRTCSRTVRAELSFSVSQVERSLREGHYAQRLSRTAPVYLAAVI
Sbjct: 1   MPRRRRRRGSSGAGGRGRTCSRTVRAELSFSVSQVERSLREGHYAQRLSRTAPVYLAAVI 60

Query: 61  EYLTAKVPELAGNEAQNSGERNITPLLLDMVVHNDRLLSTLFNTTTISQVAPGED 115
           EYLTAKVPELAGNEAQNSGERNITPLLLDMVVHNDRLLSTLFNTTTISQVAPGED
Sbjct: 61  EYLTAKVPELAGNEAQNSGERNITPLLLDMVVHNDRLLSTLFNTTTISQVAPGED 115


>gi|63029943 H2A histone family, member B2 [Homo sapiens]
          Length = 115

 Score =  222 bits (565), Expect = 6e-59
 Identities = 114/115 (99%), Positives = 114/115 (99%)

Query: 1   MPRRRRRRGSSGAGGRGRTCSRTVRAELSFSVSQVERSLREGHYAQRLSRTAPVYLAAVI 60
           MPRRRRRRGSSGAGGRGRTCSRTVRAELSFSVSQVERSLREGHYAQRLSRTAPVYLAAVI
Sbjct: 1   MPRRRRRRGSSGAGGRGRTCSRTVRAELSFSVSQVERSLREGHYAQRLSRTAPVYLAAVI 60

Query: 61  EYLTAKVPELAGNEAQNSGERNITPLLLDMVVHNDRLLSTLFNTTTISQVAPGED 115
           EYLTAKV ELAGNEAQNSGERNITPLLLDMVVHNDRLLSTLFNTTTISQVAPGED
Sbjct: 61  EYLTAKVLELAGNEAQNSGERNITPLLLDMVVHNDRLLSTLFNTTTISQVAPGED 115


>gi|63029935 H2A histone family, member B3 [Homo sapiens]
          Length = 115

 Score =  222 bits (565), Expect = 6e-59
 Identities = 114/115 (99%), Positives = 114/115 (99%)

Query: 1   MPRRRRRRGSSGAGGRGRTCSRTVRAELSFSVSQVERSLREGHYAQRLSRTAPVYLAAVI 60
           MPRRRRRRGSSGAGGRGRTCSRTVRAELSFSVSQVERSLREGHYAQRLSRTAPVYLAAVI
Sbjct: 1   MPRRRRRRGSSGAGGRGRTCSRTVRAELSFSVSQVERSLREGHYAQRLSRTAPVYLAAVI 60

Query: 61  EYLTAKVPELAGNEAQNSGERNITPLLLDMVVHNDRLLSTLFNTTTISQVAPGED 115
           EYLTAKV ELAGNEAQNSGERNITPLLLDMVVHNDRLLSTLFNTTTISQVAPGED
Sbjct: 61  EYLTAKVLELAGNEAQNSGERNITPLLLDMVVHNDRLLSTLFNTTTISQVAPGED 115


>gi|4504253 H2A histone family, member X [Homo sapiens]
          Length = 143

 Score = 95.1 bits (235), Expect = 1e-20
 Identities = 49/102 (48%), Positives = 67/102 (65%)

Query: 8   RGSSGAGGRGRTCSRTVRAELSFSVSQVERSLREGHYAQRLSRTAPVYLAAVIEYLTAKV 67
           RG +G   R +  SR+ RA L F V +V R LR+GHYA+R+   APVYLAAV+EYLTA++
Sbjct: 4   RGKTGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGHYAERVGAGAPVYLAAVLEYLTAEI 63

Query: 68  PELAGNEAQNSGERNITPLLLDMVVHNDRLLSTLFNTTTISQ 109
            ELAGN A+++ +  I P  L + + ND  L+ L    TI+Q
Sbjct: 64  LELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQ 105


>gi|4504245 histone cluster 1, H2ac [Homo sapiens]
          Length = 130

 Score = 92.4 bits (228), Expect = 7e-20
 Identities = 48/102 (47%), Positives = 66/102 (64%)

Query: 8   RGSSGAGGRGRTCSRTVRAELSFSVSQVERSLREGHYAQRLSRTAPVYLAAVIEYLTAKV 67
           RG  G   R +  SR+ RA L F V +V R LR+G+YA+R+   APVYLAAV+EYLTA++
Sbjct: 4   RGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEI 63

Query: 68  PELAGNEAQNSGERNITPLLLDMVVHNDRLLSTLFNTTTISQ 109
            ELAGN A+++ +  I P  L + + ND  L+ L    TI+Q
Sbjct: 64  LELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQ 105


>gi|28195394 histone cluster 2, H2ab [Homo sapiens]
          Length = 130

 Score = 92.4 bits (228), Expect = 7e-20
 Identities = 49/102 (48%), Positives = 66/102 (64%)

Query: 8   RGSSGAGGRGRTCSRTVRAELSFSVSQVERSLREGHYAQRLSRTAPVYLAAVIEYLTAKV 67
           RG  G   R +  SR+ RA L F V +V R LR+G+YA+R+   APVYLAAV+EYLTA++
Sbjct: 4   RGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEI 63

Query: 68  PELAGNEAQNSGERNITPLLLDMVVHNDRLLSTLFNTTTISQ 109
            ELAGN A+++ +  I P  L + V ND  L+ L    TI+Q
Sbjct: 64  LELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQ 105


>gi|106775678 histone cluster 2, H2aa4 [Homo sapiens]
          Length = 130

 Score = 91.7 bits (226), Expect = 1e-19
 Identities = 47/102 (46%), Positives = 66/102 (64%)

Query: 8   RGSSGAGGRGRTCSRTVRAELSFSVSQVERSLREGHYAQRLSRTAPVYLAAVIEYLTAKV 67
           RG  G   R +  SR+ RA L F V +V R LR+G+YA+R+   APVY+AAV+EYLTA++
Sbjct: 4   RGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEI 63

Query: 68  PELAGNEAQNSGERNITPLLLDMVVHNDRLLSTLFNTTTISQ 109
            ELAGN A+++ +  I P  L + + ND  L+ L    TI+Q
Sbjct: 64  LELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQ 105


>gi|24638446 histone cluster 2, H2ac [Homo sapiens]
          Length = 129

 Score = 91.7 bits (226), Expect = 1e-19
 Identities = 47/102 (46%), Positives = 66/102 (64%)

Query: 8   RGSSGAGGRGRTCSRTVRAELSFSVSQVERSLREGHYAQRLSRTAPVYLAAVIEYLTAKV 67
           RG  G   R +  SR+ RA L F V +V R LR+G+YA+R+   APVY+AAV+EYLTA++
Sbjct: 4   RGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEI 63

Query: 68  PELAGNEAQNSGERNITPLLLDMVVHNDRLLSTLFNTTTISQ 109
            ELAGN A+++ +  I P  L + + ND  L+ L    TI+Q
Sbjct: 64  LELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQ 105


>gi|4504251 histone cluster 2, H2aa3 [Homo sapiens]
          Length = 130

 Score = 91.7 bits (226), Expect = 1e-19
 Identities = 47/102 (46%), Positives = 66/102 (64%)

Query: 8   RGSSGAGGRGRTCSRTVRAELSFSVSQVERSLREGHYAQRLSRTAPVYLAAVIEYLTAKV 67
           RG  G   R +  SR+ RA L F V +V R LR+G+YA+R+   APVY+AAV+EYLTA++
Sbjct: 4   RGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEI 63

Query: 68  PELAGNEAQNSGERNITPLLLDMVVHNDRLLSTLFNTTTISQ 109
            ELAGN A+++ +  I P  L + + ND  L+ L    TI+Q
Sbjct: 64  LELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQ 105


>gi|29553970 H2A histone family, member J [Homo sapiens]
          Length = 129

 Score = 91.3 bits (225), Expect = 2e-19
 Identities = 48/102 (47%), Positives = 66/102 (64%)

Query: 8   RGSSGAGGRGRTCSRTVRAELSFSVSQVERSLREGHYAQRLSRTAPVYLAAVIEYLTAKV 67
           RG  G   R +  SR+ RA L F V +V R LR+G+YA+R+   APVYLAAV+EYLTA++
Sbjct: 4   RGKQGGKVRAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEI 63

Query: 68  PELAGNEAQNSGERNITPLLLDMVVHNDRLLSTLFNTTTISQ 109
            ELAGN A+++ +  I P  L + + ND  L+ L    TI+Q
Sbjct: 64  LELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQ 105


>gi|10800132 histone cluster 1, H2ag [Homo sapiens]
          Length = 130

 Score = 91.3 bits (225), Expect = 2e-19
 Identities = 47/102 (46%), Positives = 66/102 (64%)

Query: 8   RGSSGAGGRGRTCSRTVRAELSFSVSQVERSLREGHYAQRLSRTAPVYLAAVIEYLTAKV 67
           RG  G   R +  +R+ RA L F V +V R LR+G+YA+R+   APVYLAAV+EYLTA++
Sbjct: 4   RGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEI 63

Query: 68  PELAGNEAQNSGERNITPLLLDMVVHNDRLLSTLFNTTTISQ 109
            ELAGN A+++ +  I P  L + + ND  L+ L    TI+Q
Sbjct: 64  LELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQ 105


>gi|4504239 histone cluster 1, H2ai [Homo sapiens]
          Length = 130

 Score = 91.3 bits (225), Expect = 2e-19
 Identities = 47/102 (46%), Positives = 66/102 (64%)

Query: 8   RGSSGAGGRGRTCSRTVRAELSFSVSQVERSLREGHYAQRLSRTAPVYLAAVIEYLTAKV 67
           RG  G   R +  +R+ RA L F V +V R LR+G+YA+R+   APVYLAAV+EYLTA++
Sbjct: 4   RGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEI 63

Query: 68  PELAGNEAQNSGERNITPLLLDMVVHNDRLLSTLFNTTTISQ 109
            ELAGN A+++ +  I P  L + + ND  L+ L    TI+Q
Sbjct: 64  LELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQ 105


>gi|18105045 histone cluster 1, H2ah [Homo sapiens]
          Length = 128

 Score = 91.3 bits (225), Expect = 2e-19
 Identities = 47/102 (46%), Positives = 66/102 (64%)

Query: 8   RGSSGAGGRGRTCSRTVRAELSFSVSQVERSLREGHYAQRLSRTAPVYLAAVIEYLTAKV 67
           RG  G   R +  +R+ RA L F V +V R LR+G+YA+R+   APVYLAAV+EYLTA++
Sbjct: 4   RGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEI 63

Query: 68  PELAGNEAQNSGERNITPLLLDMVVHNDRLLSTLFNTTTISQ 109
            ELAGN A+++ +  I P  L + + ND  L+ L    TI+Q
Sbjct: 64  LELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQ 105


>gi|4504241 histone cluster 1, H2ak [Homo sapiens]
          Length = 130

 Score = 91.3 bits (225), Expect = 2e-19
 Identities = 47/102 (46%), Positives = 66/102 (64%)

Query: 8   RGSSGAGGRGRTCSRTVRAELSFSVSQVERSLREGHYAQRLSRTAPVYLAAVIEYLTAKV 67
           RG  G   R +  +R+ RA L F V +V R LR+G+YA+R+   APVYLAAV+EYLTA++
Sbjct: 4   RGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEI 63

Query: 68  PELAGNEAQNSGERNITPLLLDMVVHNDRLLSTLFNTTTISQ 109
            ELAGN A+++ +  I P  L + + ND  L+ L    TI+Q
Sbjct: 64  LELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQ 105


>gi|25092737 histone cluster 1, H2aa [Homo sapiens]
          Length = 131

 Score = 91.3 bits (225), Expect = 2e-19
 Identities = 46/102 (45%), Positives = 67/102 (65%)

Query: 8   RGSSGAGGRGRTCSRTVRAELSFSVSQVERSLREGHYAQRLSRTAPVYLAAVIEYLTAKV 67
           RG  G   R ++ SR+ RA L F V ++ R LR+G+YA+R+   APVYLAAV+EYLTA++
Sbjct: 4   RGKQGGKARAKSKSRSSRAGLQFPVGRIHRLLRKGNYAERIGAGAPVYLAAVLEYLTAEI 63

Query: 68  PELAGNEAQNSGERNITPLLLDMVVHNDRLLSTLFNTTTISQ 109
            ELAGN ++++ +  I P  L + + ND  L+ L    TI+Q
Sbjct: 64  LELAGNASRDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQ 105


>gi|15617199 histone cluster 3, H2a [Homo sapiens]
          Length = 130

 Score = 91.3 bits (225), Expect = 2e-19
 Identities = 47/102 (46%), Positives = 66/102 (64%)

Query: 8   RGSSGAGGRGRTCSRTVRAELSFSVSQVERSLREGHYAQRLSRTAPVYLAAVIEYLTAKV 67
           RG  G   R +  SR+ RA L F V +V R LR+G+Y++R+   APVYLAAV+EYLTA++
Sbjct: 4   RGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEI 63

Query: 68  PELAGNEAQNSGERNITPLLLDMVVHNDRLLSTLFNTTTISQ 109
            ELAGN A+++ +  I P  L + + ND  L+ L    TI+Q
Sbjct: 64  LELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQ 105


>gi|4504249 histone cluster 1, H2am [Homo sapiens]
          Length = 130

 Score = 91.3 bits (225), Expect = 2e-19
 Identities = 47/102 (46%), Positives = 66/102 (64%)

Query: 8   RGSSGAGGRGRTCSRTVRAELSFSVSQVERSLREGHYAQRLSRTAPVYLAAVIEYLTAKV 67
           RG  G   R +  +R+ RA L F V +V R LR+G+YA+R+   APVYLAAV+EYLTA++
Sbjct: 4   RGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEI 63

Query: 68  PELAGNEAQNSGERNITPLLLDMVVHNDRLLSTLFNTTTISQ 109
            ELAGN A+++ +  I P  L + + ND  L+ L    TI+Q
Sbjct: 64  LELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQ 105


>gi|4504243 histone cluster 1, H2al [Homo sapiens]
          Length = 130

 Score = 91.3 bits (225), Expect = 2e-19
 Identities = 47/102 (46%), Positives = 66/102 (64%)

Query: 8   RGSSGAGGRGRTCSRTVRAELSFSVSQVERSLREGHYAQRLSRTAPVYLAAVIEYLTAKV 67
           RG  G   R +  +R+ RA L F V +V R LR+G+YA+R+   APVYLAAV+EYLTA++
Sbjct: 4   RGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEI 63

Query: 68  PELAGNEAQNSGERNITPLLLDMVVHNDRLLSTLFNTTTISQ 109
            ELAGN A+++ +  I P  L + + ND  L+ L    TI+Q
Sbjct: 64  LELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQ 105


>gi|10800144 histone cluster 1, H2aj [Homo sapiens]
          Length = 128

 Score = 91.3 bits (225), Expect = 2e-19
 Identities = 47/102 (46%), Positives = 66/102 (64%)

Query: 8   RGSSGAGGRGRTCSRTVRAELSFSVSQVERSLREGHYAQRLSRTAPVYLAAVIEYLTAKV 67
           RG  G   R +  +R+ RA L F V +V R LR+G+YA+R+   APVYLAAV+EYLTA++
Sbjct: 4   RGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEI 63

Query: 68  PELAGNEAQNSGERNITPLLLDMVVHNDRLLSTLFNTTTISQ 109
            ELAGN A+++ +  I P  L + + ND  L+ L    TI+Q
Sbjct: 64  LELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQ 105


>gi|19557656 histone cluster 1, H2ab [Homo sapiens]
          Length = 130

 Score = 90.1 bits (222), Expect = 3e-19
 Identities = 46/102 (45%), Positives = 66/102 (64%)

Query: 8   RGSSGAGGRGRTCSRTVRAELSFSVSQVERSLREGHYAQRLSRTAPVYLAAVIEYLTAKV 67
           RG  G   R +  +R+ RA L F V +V R LR+G+Y++R+   APVYLAAV+EYLTA++
Sbjct: 4   RGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEI 63

Query: 68  PELAGNEAQNSGERNITPLLLDMVVHNDRLLSTLFNTTTISQ 109
            ELAGN A+++ +  I P  L + + ND  L+ L    TI+Q
Sbjct: 64  LELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQ 105


>gi|10645195 histone cluster 1, H2ae [Homo sapiens]
          Length = 130

 Score = 90.1 bits (222), Expect = 3e-19
 Identities = 46/102 (45%), Positives = 66/102 (64%)

Query: 8   RGSSGAGGRGRTCSRTVRAELSFSVSQVERSLREGHYAQRLSRTAPVYLAAVIEYLTAKV 67
           RG  G   R +  +R+ RA L F V +V R LR+G+Y++R+   APVYLAAV+EYLTA++
Sbjct: 4   RGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEI 63

Query: 68  PELAGNEAQNSGERNITPLLLDMVVHNDRLLSTLFNTTTISQ 109
            ELAGN A+++ +  I P  L + + ND  L+ L    TI+Q
Sbjct: 64  LELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQ 105


>gi|10800130 histone cluster 1, H2ad [Homo sapiens]
          Length = 130

 Score = 90.1 bits (222), Expect = 3e-19
 Identities = 46/102 (45%), Positives = 66/102 (64%)

Query: 8   RGSSGAGGRGRTCSRTVRAELSFSVSQVERSLREGHYAQRLSRTAPVYLAAVIEYLTAKV 67
           RG  G   R +  +R+ RA L F V +V R LR+G+Y++R+   APVYLAAV+EYLTA++
Sbjct: 4   RGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEI 63

Query: 68  PELAGNEAQNSGERNITPLLLDMVVHNDRLLSTLFNTTTISQ 109
            ELAGN A+++ +  I P  L + + ND  L+ L    TI+Q
Sbjct: 64  LELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQ 105


>gi|4758496 H2A histone family, member Y isoform 2 [Homo sapiens]
          Length = 371

 Score = 71.2 bits (173), Expect = 2e-13
 Identities = 39/100 (39%), Positives = 64/100 (64%), Gaps = 2/100 (2%)

Query: 11  SGAGGRGRTC--SRTVRAELSFSVSQVERSLREGHYAQRLSRTAPVYLAAVIEYLTAKVP 68
           S  GG+ ++   SR+ +A + F V ++ R +++GH   R+   APVY+AAV+EYLTA++ 
Sbjct: 2   SSRGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEIL 61

Query: 69  ELAGNEAQNSGERNITPLLLDMVVHNDRLLSTLFNTTTIS 108
           ELAGN A+++ +  +TP  + + V ND  L+ L    TI+
Sbjct: 62  ELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIA 101


>gi|93141020 H2A histone family, member Y isoform 2 [Homo sapiens]
          Length = 371

 Score = 71.2 bits (173), Expect = 2e-13
 Identities = 39/100 (39%), Positives = 64/100 (64%), Gaps = 2/100 (2%)

Query: 11  SGAGGRGRTC--SRTVRAELSFSVSQVERSLREGHYAQRLSRTAPVYLAAVIEYLTAKVP 68
           S  GG+ ++   SR+ +A + F V ++ R +++GH   R+   APVY+AAV+EYLTA++ 
Sbjct: 2   SSRGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEIL 61

Query: 69  ELAGNEAQNSGERNITPLLLDMVVHNDRLLSTLFNTTTIS 108
           ELAGN A+++ +  +TP  + + V ND  L+ L    TI+
Sbjct: 62  ELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIA 101


>gi|93141018 H2A histone family, member Y isoform 3 [Homo sapiens]
          Length = 372

 Score = 71.2 bits (173), Expect = 2e-13
 Identities = 39/100 (39%), Positives = 64/100 (64%), Gaps = 2/100 (2%)

Query: 11  SGAGGRGRTC--SRTVRAELSFSVSQVERSLREGHYAQRLSRTAPVYLAAVIEYLTAKVP 68
           S  GG+ ++   SR+ +A + F V ++ R +++GH   R+   APVY+AAV+EYLTA++ 
Sbjct: 2   SSRGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEIL 61

Query: 69  ELAGNEAQNSGERNITPLLLDMVVHNDRLLSTLFNTTTIS 108
           ELAGN A+++ +  +TP  + + V ND  L+ L    TI+
Sbjct: 62  ELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIA 101


>gi|20336746 H2A histone family, member Y isoform 1 [Homo sapiens]
          Length = 369

 Score = 71.2 bits (173), Expect = 2e-13
 Identities = 39/100 (39%), Positives = 64/100 (64%), Gaps = 2/100 (2%)

Query: 11  SGAGGRGRTC--SRTVRAELSFSVSQVERSLREGHYAQRLSRTAPVYLAAVIEYLTAKVP 68
           S  GG+ ++   SR+ +A + F V ++ R +++GH   R+   APVY+AAV+EYLTA++ 
Sbjct: 2   SSRGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEIL 61

Query: 69  ELAGNEAQNSGERNITPLLLDMVVHNDRLLSTLFNTTTIS 108
           ELAGN A+++ +  +TP  + + V ND  L+ L    TI+
Sbjct: 62  ELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIA 101


>gi|8923920 H2A histone family, member Y2 [Homo sapiens]
          Length = 372

 Score = 70.5 bits (171), Expect = 3e-13
 Identities = 41/100 (41%), Positives = 62/100 (62%), Gaps = 2/100 (2%)

Query: 11  SGAGGRGRTC--SRTVRAELSFSVSQVERSLREGHYAQRLSRTAPVYLAAVIEYLTAKVP 68
           SG  G+ +    SR+ RA + F V ++ R L++G +  R+S  APVY+AAVIEYL A++ 
Sbjct: 2   SGRSGKKKMSKLSRSARAGVIFPVGRLMRYLKKGTFKYRISVGAPVYMAAVIEYLAAEIL 61

Query: 69  ELAGNEAQNSGERNITPLLLDMVVHNDRLLSTLFNTTTIS 108
           ELAGN A+++ +  I P  + + V ND  L+ L    TI+
Sbjct: 62  ELAGNAARDNKKARIAPRHILLAVANDEELNQLLKGVTIA 101


>gi|20357599 H2A histone family, member V isoform 2 [Homo sapiens]
          Length = 114

 Score = 64.3 bits (155), Expect = 2e-11
 Identities = 39/109 (35%), Positives = 59/109 (54%), Gaps = 5/109 (4%)

Query: 7   RRGSSGAGGRGRTCSRTVRAELSFSVSQVERSLREGHYAQ-RLSRTAPVYLAAVIEYLTA 65
           + G      + +  SR+ RA L F V ++ R L+    +  R+  TA VY AA++EYLTA
Sbjct: 5   KAGKDSGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTA 64

Query: 66  KVPELAGNEAQNSGERNITPLLLDMVVHNDRLLSTLFNTTTISQVAPGE 114
           +V ELAGN +++   + ITP  L + +  D  L +L   T    +A GE
Sbjct: 65  EVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKAT----IAGGE 109


>gi|6912616 H2A histone family, member V isoform 1 [Homo sapiens]
          Length = 128

 Score = 63.9 bits (154), Expect = 3e-11
 Identities = 36/100 (36%), Positives = 55/100 (55%), Gaps = 1/100 (1%)

Query: 7   RRGSSGAGGRGRTCSRTVRAELSFSVSQVERSLREGHYAQ-RLSRTAPVYLAAVIEYLTA 65
           + G      + +  SR+ RA L F V ++ R L+    +  R+  TA VY AA++EYLTA
Sbjct: 5   KAGKDSGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTA 64

Query: 66  KVPELAGNEAQNSGERNITPLLLDMVVHNDRLLSTLFNTT 105
           +V ELAGN +++   + ITP  L + +  D  L +L   T
Sbjct: 65  EVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKAT 104


>gi|4504255 H2A histone family, member Z [Homo sapiens]
          Length = 128

 Score = 63.5 bits (153), Expect = 3e-11
 Identities = 36/100 (36%), Positives = 55/100 (55%), Gaps = 1/100 (1%)

Query: 7   RRGSSGAGGRGRTCSRTVRAELSFSVSQVERSLREGHYAQ-RLSRTAPVYLAAVIEYLTA 65
           + G      + +  SR+ RA L F V ++ R L+    +  R+  TA VY AA++EYLTA
Sbjct: 5   KAGKDSGKAKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTA 64

Query: 66  KVPELAGNEAQNSGERNITPLLLDMVVHNDRLLSTLFNTT 105
           +V ELAGN +++   + ITP  L + +  D  L +L   T
Sbjct: 65  EVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKAT 104


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.130    0.362 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,980,588
Number of Sequences: 37866
Number of extensions: 140515
Number of successful extensions: 681
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 618
Number of HSP's gapped (non-prelim): 73
length of query: 115
length of database: 18,247,518
effective HSP length: 85
effective length of query: 30
effective length of database: 15,028,908
effective search space: 450867240
effective search space used: 450867240
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.