Guide to the Human Genome
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Name: H2AFB3 Sequence: fasta or formatted (115aa) NCBI GI: 63029935
Description:

H2A histone family, member B3

Referenced in:

Histones, Related Proteins, and Modifying Enzymes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.7         10           2
 C cysteine            0.9          1           1
 D aspartate           2.6          3           1
 E glutamate           7.0          8           1
 F phenylalanine       1.7          2           1
 G glycine             7.8          9           2
 H histidine           1.7          2           1
 I isoleucine          2.6          3           1
 K lysine              0.9          1           1
 L leucine            11.3         13           3
 M methionine          1.7          2           1
 N asparagine          4.3          5           1
 P proline             3.5          4           1
 Q glutamine           3.5          4           1
 R arginine           13.9         16           6
 S serine              9.6         11           2
 T threonine           7.8          9           3
 V valine              7.8          9           2
 W tryptophan          0.0          0           0
 Y tyrosine            2.6          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   H2A histone family, member B3 
H2AFB2                1.000   H2A histone family, member B2 
H2AFB1                0.990   H2A histone family, member B1 
H2AFX                 0.367   H2A histone family, member X 
HIST1H2AC             0.352   histone cluster 1, H2ac 
HIST2H2AB             0.352   histone cluster 2, H2ab 
HIST2H2AA4            0.347   histone cluster 2, H2aa4 
HIST2H2AC             0.347   histone cluster 2, H2ac 
HIST2H2AA3            0.347   histone cluster 2, H2aa3 
H2AFJ                 0.347   H2A histone family, member J 
HIST1H2AG             0.347   histone cluster 1, H2ag 
HIST1H2AI             0.347   histone cluster 1, H2ai 
HIST1H2AH             0.347   histone cluster 1, H2ah 
HIST1H2AK             0.347   histone cluster 1, H2ak 
HIST1H2AA             0.347   histone cluster 1, H2aa 
HIST3H2A              0.347   histone cluster 3, H2a 
HIST1H2AM             0.347   histone cluster 1, H2am 
HIST1H2AL             0.347   histone cluster 1, H2al 
HIST1H2AJ             0.347   histone cluster 1, H2aj 
HIST1H2AB             0.342   histone cluster 1, H2ab 
HIST1H2AE             0.342   histone cluster 1, H2ae 
HIST1H2AD             0.342   histone cluster 1, H2ad 
H2AFY                 0.246   H2A histone family, member Y isoform 2 
H2AFY                 0.246   H2A histone family, member Y isoform 2 
H2AFY                 0.246   H2A histone family, member Y isoform 3 
H2AFY                 0.246   H2A histone family, member Y isoform 1 
H2AFY2                0.241   H2A histone family, member Y2 
H2AFV                 0.211   H2A histone family, member V isoform 2 
H2AFV                 0.211   H2A histone family, member V isoform 1 
H2AFZ                 0.206   H2A histone family, member Z 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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