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Search of human proteins with 6224979
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|6224979 uracil-DNA glycosylase isoform UNG1 precursor [Homo
sapiens]
(304 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|6224979 uracil-DNA glycosylase isoform UNG1 precursor [Homo s... 642 0.0
gi|19718751 uracil-DNA glycosylase isoform UNG2 [Homo sapiens] 566 e-161
gi|134288906 tripartite motif-containing 67 [Homo sapiens] 33 0.41
gi|157738619 smoothelin-like 1 [Homo sapiens] 32 0.91
gi|239753493 PREDICTED: hypothetical protein [Homo sapiens] 30 2.0
gi|239748056 PREDICTED: hypothetical protein XP_002346522 [Homo ... 30 2.0
gi|239741949 PREDICTED: hypothetical protein XP_002342360 [Homo ... 30 2.0
gi|66932986 filamin-binding LIM protein-1 isoform b [Homo sapiens] 30 2.0
gi|66932982 filamin-binding LIM protein-1 isoform a [Homo sapiens] 30 2.0
gi|110431350 endo-beta-N-acetylglucosaminidase [Homo sapiens] 30 2.6
gi|111118994 brain-specific angiogenesis inhibitor 1 precursor [... 30 2.6
gi|48255900 SWI/SNF-related matrix-associated actin-dependent re... 29 4.5
gi|48255898 SWI/SNF-related matrix-associated actin-dependent re... 29 4.5
gi|148298722 zinc finger protein 185 [Homo sapiens] 29 4.5
gi|223278403 glutamate receptor, ionotropic, delta 2 (Grid2) int... 29 5.9
gi|45597177 TBC1 domain family, member 9B (with GRAM domain) iso... 29 5.9
gi|45597175 TBC1 domain family, member 9B (with GRAM domain) iso... 29 5.9
gi|28872814 semaphorin 4G [Homo sapiens] 29 5.9
gi|64368880 zinc finger and SCAN domain containing 25 [Homo sapi... 29 5.9
gi|22748713 ankyrin repeat domain 9 [Homo sapiens] 29 5.9
gi|121114302 cullin 4B isoform 2 [Homo sapiens] 28 7.7
gi|121114298 cullin 4B isoform 1 [Homo sapiens] 28 7.7
gi|239744587 PREDICTED: hypothetical protein XP_002343203 [Homo ... 28 7.7
gi|110611170 ADAM metallopeptidase with thrombospondin type 1 mo... 28 7.7
gi|148727311 hypothetical protein LOC389690 [Homo sapiens] 28 7.7
>gi|6224979 uracil-DNA glycosylase isoform UNG1 precursor [Homo
sapiens]
Length = 304
Score = 642 bits (1655), Expect = 0.0
Identities = 304/304 (100%), Positives = 304/304 (100%)
Query: 1 MGVFCLGPWGLGRKLRTPGKGPLQLLSRLCGDHLQAIPAKKAPAGQEEPGTPPSSPLSAE 60
MGVFCLGPWGLGRKLRTPGKGPLQLLSRLCGDHLQAIPAKKAPAGQEEPGTPPSSPLSAE
Sbjct: 1 MGVFCLGPWGLGRKLRTPGKGPLQLLSRLCGDHLQAIPAKKAPAGQEEPGTPPSSPLSAE 60
Query: 61 QLDRIQRNKAAALLRLAARNVPVGFGESWKKHLSGEFGKPYFIKLMGFVAEERKHYTVYP 120
QLDRIQRNKAAALLRLAARNVPVGFGESWKKHLSGEFGKPYFIKLMGFVAEERKHYTVYP
Sbjct: 61 QLDRIQRNKAAALLRLAARNVPVGFGESWKKHLSGEFGKPYFIKLMGFVAEERKHYTVYP 120
Query: 121 PPHQVFTWTQMCDIKDVKVVILGQDPYHGPNQAHGLCFSVQRPVPPPPSLENIYKELSTD 180
PPHQVFTWTQMCDIKDVKVVILGQDPYHGPNQAHGLCFSVQRPVPPPPSLENIYKELSTD
Sbjct: 121 PPHQVFTWTQMCDIKDVKVVILGQDPYHGPNQAHGLCFSVQRPVPPPPSLENIYKELSTD 180
Query: 181 IEDFVHPGHGDLSGWAKQGVLLLNAVLTVRAHQANSHKERGWEQFTDAVVSWLNQNSNGL 240
IEDFVHPGHGDLSGWAKQGVLLLNAVLTVRAHQANSHKERGWEQFTDAVVSWLNQNSNGL
Sbjct: 181 IEDFVHPGHGDLSGWAKQGVLLLNAVLTVRAHQANSHKERGWEQFTDAVVSWLNQNSNGL 240
Query: 241 VFLLWGSYAQKKGSAIDRKRHHVLQTAHPSPLSVYRGFFGCRHFSKTNELLQKSGKKPID 300
VFLLWGSYAQKKGSAIDRKRHHVLQTAHPSPLSVYRGFFGCRHFSKTNELLQKSGKKPID
Sbjct: 241 VFLLWGSYAQKKGSAIDRKRHHVLQTAHPSPLSVYRGFFGCRHFSKTNELLQKSGKKPID 300
Query: 301 WKEL 304
WKEL
Sbjct: 301 WKEL 304
>gi|19718751 uracil-DNA glycosylase isoform UNG2 [Homo sapiens]
Length = 313
Score = 566 bits (1458), Expect = e-161
Identities = 269/269 (100%), Positives = 269/269 (100%)
Query: 36 AIPAKKAPAGQEEPGTPPSSPLSAEQLDRIQRNKAAALLRLAARNVPVGFGESWKKHLSG 95
AIPAKKAPAGQEEPGTPPSSPLSAEQLDRIQRNKAAALLRLAARNVPVGFGESWKKHLSG
Sbjct: 45 AIPAKKAPAGQEEPGTPPSSPLSAEQLDRIQRNKAAALLRLAARNVPVGFGESWKKHLSG 104
Query: 96 EFGKPYFIKLMGFVAEERKHYTVYPPPHQVFTWTQMCDIKDVKVVILGQDPYHGPNQAHG 155
EFGKPYFIKLMGFVAEERKHYTVYPPPHQVFTWTQMCDIKDVKVVILGQDPYHGPNQAHG
Sbjct: 105 EFGKPYFIKLMGFVAEERKHYTVYPPPHQVFTWTQMCDIKDVKVVILGQDPYHGPNQAHG 164
Query: 156 LCFSVQRPVPPPPSLENIYKELSTDIEDFVHPGHGDLSGWAKQGVLLLNAVLTVRAHQAN 215
LCFSVQRPVPPPPSLENIYKELSTDIEDFVHPGHGDLSGWAKQGVLLLNAVLTVRAHQAN
Sbjct: 165 LCFSVQRPVPPPPSLENIYKELSTDIEDFVHPGHGDLSGWAKQGVLLLNAVLTVRAHQAN 224
Query: 216 SHKERGWEQFTDAVVSWLNQNSNGLVFLLWGSYAQKKGSAIDRKRHHVLQTAHPSPLSVY 275
SHKERGWEQFTDAVVSWLNQNSNGLVFLLWGSYAQKKGSAIDRKRHHVLQTAHPSPLSVY
Sbjct: 225 SHKERGWEQFTDAVVSWLNQNSNGLVFLLWGSYAQKKGSAIDRKRHHVLQTAHPSPLSVY 284
Query: 276 RGFFGCRHFSKTNELLQKSGKKPIDWKEL 304
RGFFGCRHFSKTNELLQKSGKKPIDWKEL
Sbjct: 285 RGFFGCRHFSKTNELLQKSGKKPIDWKEL 313
>gi|134288906 tripartite motif-containing 67 [Homo sapiens]
Length = 783
Score = 32.7 bits (73), Expect = 0.41
Identities = 19/51 (37%), Positives = 21/51 (41%), Gaps = 3/51 (5%)
Query: 121 PPHQVFTWTQMCDIKDVKVVILGQDPYHGPNQAHGLCFSVQRPVPPPPSLE 171
PP T + CD+ L P GP H L VQ P PPPP E
Sbjct: 215 PPEPAATLCEQCDVLYCSACQLKCHPSRGPFAKHRL---VQPPPPPPPPAE 262
>gi|157738619 smoothelin-like 1 [Homo sapiens]
Length = 512
Score = 31.6 bits (70), Expect = 0.91
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
Query: 8 PWGLGRKLRTPGKGPLQLLSRLCGDHLQAIPAKKAPAGQEEPGTPPSSPLSAEQLDRIQR 67
P G G L T G GP + S Q P+ + + P +PP SP S E+ ++
Sbjct: 297 PTGEGHNLSTDGLGPDCVASG------QTSPSASESSPSDVPQSPPESPSSGEKKEKAPE 350
Query: 68 NKAAALLR 75
+ +A R
Sbjct: 351 RRVSAPAR 358
>gi|239753493 PREDICTED: hypothetical protein [Homo sapiens]
Length = 254
Score = 30.4 bits (67), Expect = 2.0
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 4/49 (8%)
Query: 5 CLGPWGLGRKLRTPGKGPLQLLSRLCGDHLQAIPAKKAPAGQEEPGTPP 53
C PW PG+ + LC A+P AP+G E P +PP
Sbjct: 190 CAAPWVPQCHPLPPGQSSAERYRALC----PALPPSSAPSGAEAPRSPP 234
>gi|239748056 PREDICTED: hypothetical protein XP_002346522 [Homo
sapiens]
Length = 254
Score = 30.4 bits (67), Expect = 2.0
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 4/49 (8%)
Query: 5 CLGPWGLGRKLRTPGKGPLQLLSRLCGDHLQAIPAKKAPAGQEEPGTPP 53
C PW PG+ + LC A+P AP+G E P +PP
Sbjct: 190 CAAPWVPQCHPLPPGQSSAERYRALC----PALPPSSAPSGAEAPRSPP 234
>gi|239741949 PREDICTED: hypothetical protein XP_002342360 [Homo
sapiens]
Length = 254
Score = 30.4 bits (67), Expect = 2.0
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 4/49 (8%)
Query: 5 CLGPWGLGRKLRTPGKGPLQLLSRLCGDHLQAIPAKKAPAGQEEPGTPP 53
C PW PG+ + LC A+P AP+G E P +PP
Sbjct: 190 CAAPWVPQCHPLPPGQSSAERYRALC----PALPPSSAPSGAEAPRSPP 234
>gi|66932986 filamin-binding LIM protein-1 isoform b [Homo sapiens]
Length = 374
Score = 30.4 bits (67), Expect = 2.0
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 144 QDPYHGPNQAHGLCFSVQRPVPPPPSLENIYKELSTDIEDFVH 186
Q P GP+ G ++ +PPPP+ E + K STDI F H
Sbjct: 146 QAPAEGPSVQPGPLRPMEEELPPPPA-EPVEKGASTDICAFCH 187
>gi|66932982 filamin-binding LIM protein-1 isoform a [Homo sapiens]
Length = 373
Score = 30.4 bits (67), Expect = 2.0
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 144 QDPYHGPNQAHGLCFSVQRPVPPPPSLENIYKELSTDIEDFVH 186
Q P GP+ G ++ +PPPP+ E + K STDI F H
Sbjct: 146 QAPAEGPSVQPGPLRPMEEELPPPPA-EPVEKGASTDICAFCH 187
>gi|110431350 endo-beta-N-acetylglucosaminidase [Homo sapiens]
Length = 743
Score = 30.0 bits (66), Expect = 2.6
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 158 FSVQRPVPPPPSLENIYK-ELSTDIEDFVHPGHGDLSGWAKQGVLLLNAVLTVR 210
FS+Q PVPP L +YK E TD+ + GD G+ +LNA + R
Sbjct: 483 FSLQAPVPPKIYLSMVYKLEGPTDVTVALELTTGDAGSCHIGGISVLNAETSSR 536
>gi|111118994 brain-specific angiogenesis inhibitor 1 precursor [Homo
sapiens]
Length = 1584
Score = 30.0 bits (66), Expect = 2.6
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 161 QRPVPPPPSLENIYKELSTDIEDFVHPG 188
Q+P+PPPP+LE L E HPG
Sbjct: 1423 QQPLPPPPNLEPAPPSLGDPGEPAAHPG 1450
>gi|48255900 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform a [Homo sapiens]
Length = 1590
Score = 29.3 bits (64), Expect = 4.5
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 141 ILGQDPYHGPNQAHGLCFSVQRPVPPPPSLENIYKEL-STDI-EDFVHPGHGDLSGWAKQ 198
ILG P GP + G S+ P P PPS+ + + STD ++ +H H + G +
Sbjct: 26 ILGPSP--GPGPSPGSVHSMMGPSPGPPSVSHPMPTMGSTDFPQEGMHQMHKPIDGIHDK 83
Query: 199 GVL 201
G++
Sbjct: 84 GIV 86
>gi|48255898 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform b [Homo sapiens]
Length = 1572
Score = 29.3 bits (64), Expect = 4.5
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 141 ILGQDPYHGPNQAHGLCFSVQRPVPPPPSLENIYKEL-STDI-EDFVHPGHGDLSGWAKQ 198
ILG P GP + G S+ P P PPS+ + + STD ++ +H H + G +
Sbjct: 26 ILGPSP--GPGPSPGSVHSMMGPSPGPPSVSHPMPTMGSTDFPQEGMHQMHKPIDGIHDK 83
Query: 199 GVL 201
G++
Sbjct: 84 GIV 86
>gi|148298722 zinc finger protein 185 [Homo sapiens]
Length = 689
Score = 29.3 bits (64), Expect = 4.5
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 36 AIPAKKAPAGQEEPGTPP--SSPLSAEQLDRIQRNKAAALLRLAARNVPVGFGESWK 90
A+PA++ PA +P TP SSP +EQL R + ++ L ++V GE+W+
Sbjct: 436 AVPAQQ-PA---DPSTPERQSSPSGSEQLVRRESCGSSVLTDFEGKDVATKVGEAWQ 488
>gi|223278403 glutamate receptor, ionotropic, delta 2 (Grid2)
interacting protein [Homo sapiens]
Length = 1211
Score = 28.9 bits (63), Expect = 5.9
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 26 LSRLCGDHLQAIPAKKAPAGQEEPGTPPSSPLSAEQLDRIQRNKAAA--LLRLAARNVP 82
L+R C ++ AP G PG+ P++P + + R R A LLRLA R P
Sbjct: 68 LARRCPRVPPSLGVLPAPDGGPGPGSGPAAPTTVLRAPRCGRGLALGRELLRLAGRKRP 126
>gi|45597177 TBC1 domain family, member 9B (with GRAM domain)
isoform b [Homo sapiens]
Length = 1233
Score = 28.9 bits (63), Expect = 5.9
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 16 RTPGKGPLQLLSRLCGDHLQAIPAKKAPAGQEEPGTPPSSPLSAEQLDRIQRNKAAA--L 73
+TP K P + SR + + AP E P+SPLS+ Q Q A+ L
Sbjct: 396 KTPSKQPGSIGSRKASVVDPSTESSPAPQEGSEQPASPASPLSSRQSFCAQEAPTASQGL 455
Query: 74 LRLAARNVPV 83
L+L +N P+
Sbjct: 456 LKLFQKNSPM 465
>gi|45597175 TBC1 domain family, member 9B (with GRAM domain)
isoform a [Homo sapiens]
Length = 1250
Score = 28.9 bits (63), Expect = 5.9
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 16 RTPGKGPLQLLSRLCGDHLQAIPAKKAPAGQEEPGTPPSSPLSAEQLDRIQRNKAAA--L 73
+TP K P + SR + + AP E P+SPLS+ Q Q A+ L
Sbjct: 396 KTPSKQPGSIGSRKASVVDPSTESSPAPQEGSEQPASPASPLSSRQSFCAQEAPTASQGL 455
Query: 74 LRLAARNVPV 83
L+L +N P+
Sbjct: 456 LKLFQKNSPM 465
>gi|28872814 semaphorin 4G [Homo sapiens]
Length = 843
Score = 28.9 bits (63), Expect = 5.9
Identities = 30/99 (30%), Positives = 39/99 (39%), Gaps = 24/99 (24%)
Query: 9 WGLGRKLRTPGKG-PLQLLSRLC----------------GDHLQAIPAKKAPAGQEEPGT 51
+ LGR R G LQ +S C G LQ IP + APA P
Sbjct: 717 YSLGRASRAGGSAVQLQTVSGQCPGEEDEGDDEGAGGLEGSCLQIIPGEGAPAPPPPPPP 776
Query: 52 PPSSPLS------AEQLDRIQRNKAAALLRLAARNVPVG 84
PP + L+ +L R+ N + LLR + VP G
Sbjct: 777 PPPAELTNGLVALPSRLRRMNGN-SYVLLRQSNNGVPAG 814
>gi|64368880 zinc finger and SCAN domain containing 25 [Homo
sapiens]
Length = 544
Score = 28.9 bits (63), Expect = 5.9
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 9 WGL--GRKLRTPGKGPLQLLSRLCGDHLQAIPAKKAPAGQEEPGTPPSSPLSAE 60
WG+ G ++ P G + LS+ GD +A + P Q PG P +P E
Sbjct: 163 WGMPPGEGVQGPDPGTEEQLSQDPGDETRAFQEQALPVLQAGPGLPAVNPRDQE 216
>gi|22748713 ankyrin repeat domain 9 [Homo sapiens]
Length = 317
Score = 28.9 bits (63), Expect = 5.9
Identities = 28/89 (31%), Positives = 38/89 (42%), Gaps = 17/89 (19%)
Query: 19 GKGPLQLLSRLCGDHLQAIPAKKAPAGQEEPGTPPSSPLSAEQLDRIQRNKAAALLRLAA 78
G PL+LL R G A P+ A A PG P R + LL L A
Sbjct: 192 GLTPLELLLRQLGRDAGATPSA-AGAPASAPGEP--------------RQRRLLLLDLLA 236
Query: 79 RNVPVGFGESWKKHLSGEFGKPYFIKLMG 107
PVG S ++ L G+ +P + +L+G
Sbjct: 237 LYTPVGAAGSARQELLGD--RPRWQRLLG 263
>gi|121114302 cullin 4B isoform 2 [Homo sapiens]
Length = 895
Score = 28.5 bits (62), Expect = 7.7
Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 7/107 (6%)
Query: 201 LLLNAVLTVRAHQANSHKERGWEQFTDAVVS---WLNQNSNGLVFLLWGSYAQKKGSAID 257
L L+ ++ S + G E F ++S N+ +G++ L+ ++ G AID
Sbjct: 290 LFLDRTYVLQNSMLPSIWDMGLELFRAHIISDQKVQNKTIDGILLLI---ERERNGEAID 346
Query: 258 RKRHHVLQTAHPSPLSVYRGFFGCRHFSKTNELLQKSGKKPIDWKEL 304
R L + S L +Y+ F R +TN L G+K + +E+
Sbjct: 347 RSLLRSLLSML-SDLQIYQDSFEQRFLEETNRLYAAEGQKLMQEREV 392
>gi|121114298 cullin 4B isoform 1 [Homo sapiens]
Length = 913
Score = 28.5 bits (62), Expect = 7.7
Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 7/107 (6%)
Query: 201 LLLNAVLTVRAHQANSHKERGWEQFTDAVVS---WLNQNSNGLVFLLWGSYAQKKGSAID 257
L L+ ++ S + G E F ++S N+ +G++ L+ ++ G AID
Sbjct: 308 LFLDRTYVLQNSMLPSIWDMGLELFRAHIISDQKVQNKTIDGILLLI---ERERNGEAID 364
Query: 258 RKRHHVLQTAHPSPLSVYRGFFGCRHFSKTNELLQKSGKKPIDWKEL 304
R L + S L +Y+ F R +TN L G+K + +E+
Sbjct: 365 RSLLRSLLSML-SDLQIYQDSFEQRFLEETNRLYAAEGQKLMQEREV 410
>gi|239744587 PREDICTED: hypothetical protein XP_002343203 [Homo
sapiens]
Length = 2134
Score = 28.5 bits (62), Expect = 7.7
Identities = 23/89 (25%), Positives = 33/89 (37%), Gaps = 1/89 (1%)
Query: 16 RTPGKGPLQLLSRLCGDHLQAIPAKKAPAGQEEPGTPPSSPLSAEQLDRIQRNKAAALLR 75
RTP S H A A +PGTP +P A +I +++
Sbjct: 2026 RTPTVSAASTTSSPVSKHTDAASATAVTISGSKPGTP-GTPGGATSGGKITSGWSSSGTS 2084
Query: 76 LAARNVPVGFGESWKKHLSGEFGKPYFIK 104
A N P ++ K H +G + FIK
Sbjct: 2085 TGASNTPGEISKALKGHKNGSQCRNLFIK 2113
>gi|110611170 ADAM metallopeptidase with thrombospondin type 1
motif, 17 preproprotein [Homo sapiens]
Length = 1095
Score = 28.5 bits (62), Expect = 7.7
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 7/46 (15%)
Query: 33 HLQAIPAKKAPAGQEEPGTPPSSPLSAEQLDRIQRNKAAALLRLAA 78
HL +PA P + P TPP++P R + + A LL L A
Sbjct: 49 HLPPLPAAPGPRRRRRPRTPPAAP-------RARPGERALLLHLPA 87
>gi|148727311 hypothetical protein LOC389690 [Homo sapiens]
Length = 1318
Score = 28.5 bits (62), Expect = 7.7
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 11/82 (13%)
Query: 231 SWLNQNSNGLVFLLWGSY-----AQKKGSAIDRKRHHVLQTAHPSP-----LSVYRGFFG 280
SW Q + L+ Y A+K G+ + R +L+T+H P +++ G
Sbjct: 276 SWTQQEQSPEKAFLFTYYGLILQAEKNGATVRRHLQALLETSHQWPKQREGMALTLGLAA 335
Query: 281 CRHFSKTNELLQKSGK-KPIDW 301
RH +L + G+ +PI W
Sbjct: 336 TRHLDDVWAVLDQFGRSRPIRW 357
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.137 0.442
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,877,273
Number of Sequences: 37866
Number of extensions: 768112
Number of successful extensions: 2570
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 2562
Number of HSP's gapped (non-prelim): 27
length of query: 304
length of database: 18,247,518
effective HSP length: 102
effective length of query: 202
effective length of database: 14,385,186
effective search space: 2905807572
effective search space used: 2905807572
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.