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Search of human proteins with 61966781
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|61966781 hypothetical protein LOC391356 [Homo sapiens]
(140 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|61966781 hypothetical protein LOC391356 [Homo sapiens] 286 5e-78
gi|7706351 Bcl-2 inhibitor of transcription [Homo sapiens] 32 0.22
gi|148746183 ubiquitin specific protease 35 [Homo sapiens] 28 1.9
gi|5032281 dystrophin Dp427c isoform [Homo sapiens] 28 2.5
gi|5032291 dystrophin Dp260-2 isoform [Homo sapiens] 28 2.5
gi|150036268 dystrophin Dp260-1 isoform [Homo sapiens] 28 2.5
gi|5032315 dystrophin Dp427p2 isoform [Homo sapiens] 28 2.5
gi|5032287 dystrophin Dp427p1 isoform [Homo sapiens] 28 2.5
gi|113411433 PREDICTED: hypothetical protein [Homo sapiens] 28 2.5
gi|5032285 dystrophin Dp427l isoform [Homo sapiens] 28 2.5
gi|5032283 dystrophin Dp427m isoform [Homo sapiens] 28 2.5
gi|17864088 sorting nexin 13 [Homo sapiens] 27 5.5
gi|148839382 ring finger protein 169 [Homo sapiens] 27 5.5
gi|50511928 Fc fragment of IgG, low affinity IIb, receptor isofo... 27 7.1
gi|50511930 Fc fragment of IgG, low affinity IIb, receptor isofo... 27 7.1
gi|20665034 tenascin XB isoform 2 [Homo sapiens] 27 7.1
gi|188528648 tenascin XB isoform 1 precursor [Homo sapiens] 27 7.1
>gi|61966781 hypothetical protein LOC391356 [Homo sapiens]
Length = 140
Score = 286 bits (731), Expect = 5e-78
Identities = 140/140 (100%), Positives = 140/140 (100%)
Query: 1 MHRGVGPAFRVVRKMAASGAEPQVLVQYLVLRKDLSQAPFSWPAGALVAQACHAATAALH 60
MHRGVGPAFRVVRKMAASGAEPQVLVQYLVLRKDLSQAPFSWPAGALVAQACHAATAALH
Sbjct: 1 MHRGVGPAFRVVRKMAASGAEPQVLVQYLVLRKDLSQAPFSWPAGALVAQACHAATAALH 60
Query: 61 THRDHPHTAAYLQELGRMRKVVLEAPDETTLKELAETLQQKNIDHMLWLEQPENIATCIA 120
THRDHPHTAAYLQELGRMRKVVLEAPDETTLKELAETLQQKNIDHMLWLEQPENIATCIA
Sbjct: 61 THRDHPHTAAYLQELGRMRKVVLEAPDETTLKELAETLQQKNIDHMLWLEQPENIATCIA 120
Query: 121 LRPYPKEEVGQYLKKFRLFK 140
LRPYPKEEVGQYLKKFRLFK
Sbjct: 121 LRPYPKEEVGQYLKKFRLFK 140
>gi|7706351 Bcl-2 inhibitor of transcription [Homo sapiens]
Length = 179
Score = 31.6 bits (70), Expect = 0.22
Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 7/64 (10%)
Query: 29 LVLRKDLSQAPFSWPAGALVAQACHAATAAL-HTHRDHPHTAAYLQELGRMRKVVLEAPD 87
LV+R DL G + AQ HAA +A R +P + G+ KVV++APD
Sbjct: 69 LVVRNDLKMGK-----GKVAAQCSHAAVSAYKQIQRRNPEMLKQWEYCGQP-KVVVKAPD 122
Query: 88 ETTL 91
E TL
Sbjct: 123 EETL 126
>gi|148746183 ubiquitin specific protease 35 [Homo sapiens]
Length = 1018
Score = 28.5 bits (62), Expect = 1.9
Identities = 24/94 (25%), Positives = 36/94 (38%), Gaps = 2/94 (2%)
Query: 28 YLVLRKDLSQAPFSWPAGALVAQACHAATAALHTHRDHPHTAAYLQELGR-MRKVVLEAP 86
+ +LR+++ + P A AQ D PH + Q+L R + + A
Sbjct: 121 FALLRREVLRTVCERPGPAACAQVARLLARHPRCVPDGPHRLLFCQQLVRCLGRFRCPAE 180
Query: 87 DETTLKELAETLQQ-KNIDHMLWLEQPENIATCI 119
E E E QQ + LW QP I C+
Sbjct: 181 GEEGAVEFLEQAQQVSGLLAQLWRAQPAAILPCL 214
>gi|5032281 dystrophin Dp427c isoform [Homo sapiens]
Length = 3677
Score = 28.1 bits (61), Expect = 2.5
Identities = 14/47 (29%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 92 KELAETLQQKNIDHMLWLEQPENIATCIALRPYPKEEVGQYLKKFRL 138
K + Q+ + +LWLE+ +NIA+ I L P ++++ + L++ +L
Sbjct: 2202 KNILSEFQRDLNEFVLWLEEADNIAS-IPLEPGKEQQLKEKLEQVKL 2247
>gi|5032291 dystrophin Dp260-2 isoform [Homo sapiens]
Length = 2341
Score = 28.1 bits (61), Expect = 2.5
Identities = 14/47 (29%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 92 KELAETLQQKNIDHMLWLEQPENIATCIALRPYPKEEVGQYLKKFRL 138
K + Q+ + +LWLE+ +NIA+ I L P ++++ + L++ +L
Sbjct: 866 KNILSEFQRDLNEFVLWLEEADNIAS-IPLEPGKEQQLKEKLEQVKL 911
>gi|150036268 dystrophin Dp260-1 isoform [Homo sapiens]
Length = 2344
Score = 28.1 bits (61), Expect = 2.5
Identities = 14/47 (29%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 92 KELAETLQQKNIDHMLWLEQPENIATCIALRPYPKEEVGQYLKKFRL 138
K + Q+ + +LWLE+ +NIA+ I L P ++++ + L++ +L
Sbjct: 869 KNILSEFQRDLNEFVLWLEEADNIAS-IPLEPGKEQQLKEKLEQVKL 914
>gi|5032315 dystrophin Dp427p2 isoform [Homo sapiens]
Length = 3562
Score = 28.1 bits (61), Expect = 2.5
Identities = 14/47 (29%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 92 KELAETLQQKNIDHMLWLEQPENIATCIALRPYPKEEVGQYLKKFRL 138
K + Q+ + +LWLE+ +NIA+ I L P ++++ + L++ +L
Sbjct: 2087 KNILSEFQRDLNEFVLWLEEADNIAS-IPLEPGKEQQLKEKLEQVKL 2132
>gi|5032287 dystrophin Dp427p1 isoform [Homo sapiens]
Length = 3681
Score = 28.1 bits (61), Expect = 2.5
Identities = 14/47 (29%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 92 KELAETLQQKNIDHMLWLEQPENIATCIALRPYPKEEVGQYLKKFRL 138
K + Q+ + +LWLE+ +NIA+ I L P ++++ + L++ +L
Sbjct: 2206 KNILSEFQRDLNEFVLWLEEADNIAS-IPLEPGKEQQLKEKLEQVKL 2251
>gi|113411433 PREDICTED: hypothetical protein [Homo sapiens]
Length = 81
Score = 28.1 bits (61), Expect = 2.5
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 74 ELGRMRKVVLEAPDETTLKELAETLQQKNIDHMLWLEQPENIA 116
+LGR+ +L + TLK E LQ N DH + E +A
Sbjct: 2 KLGRVASALLIQHVKNTLKTFEELLQSNNFDHYMEQHYCEQLA 44
>gi|5032285 dystrophin Dp427l isoform [Homo sapiens]
Length = 3562
Score = 28.1 bits (61), Expect = 2.5
Identities = 14/47 (29%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 92 KELAETLQQKNIDHMLWLEQPENIATCIALRPYPKEEVGQYLKKFRL 138
K + Q+ + +LWLE+ +NIA+ I L P ++++ + L++ +L
Sbjct: 2087 KNILSEFQRDLNEFVLWLEEADNIAS-IPLEPGKEQQLKEKLEQVKL 2132
>gi|5032283 dystrophin Dp427m isoform [Homo sapiens]
Length = 3685
Score = 28.1 bits (61), Expect = 2.5
Identities = 14/47 (29%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 92 KELAETLQQKNIDHMLWLEQPENIATCIALRPYPKEEVGQYLKKFRL 138
K + Q+ + +LWLE+ +NIA+ I L P ++++ + L++ +L
Sbjct: 2210 KNILSEFQRDLNEFVLWLEEADNIAS-IPLEPGKEQQLKEKLEQVKL 2255
>gi|17864088 sorting nexin 13 [Homo sapiens]
Length = 957
Score = 26.9 bits (58), Expect = 5.5
Identities = 8/24 (33%), Positives = 16/24 (66%)
Query: 96 ETLQQKNIDHMLWLEQPENIATCI 119
+T+ +K +DH+ W+ PE +A +
Sbjct: 811 DTINRKIVDHVDWMTSPEQVADSV 834
>gi|148839382 ring finger protein 169 [Homo sapiens]
Length = 708
Score = 26.9 bits (58), Expect = 5.5
Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 6/77 (7%)
Query: 40 FSWPAGALVAQACHAATAALHTHRDHPHTAAYLQELGRMRKV------VLEAPDETTLKE 93
F G LV +L R +L++ G ++K+ V AP + L+E
Sbjct: 599 FDLTNGVLVESLSEEPLPSLRRGRKRHCKTKHLEQNGSLKKLRQTSGEVGLAPTDPVLRE 658
Query: 94 LAETLQQKNIDHMLWLE 110
+ + LQQ+ D L L+
Sbjct: 659 MEQKLQQEEEDRQLALQ 675
>gi|50511928 Fc fragment of IgG, low affinity IIb, receptor isoform
4 [Homo sapiens]
Length = 309
Score = 26.6 bits (57), Expect = 7.1
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 8/65 (12%)
Query: 37 QAPFSWPAGALVAQACHAATAALHTHRDHPHTAAYLQELGRMRKVVLEAPDETTLKELAE 96
QAP S P G +VA A AA+ AA + + +K + P +E+ E
Sbjct: 214 QAPSSSPMGIIVAVVTGIAVAAI--------VAAVVALIYCRKKRISALPGYPECREMGE 265
Query: 97 TLQQK 101
TL +K
Sbjct: 266 TLPEK 270
>gi|50511930 Fc fragment of IgG, low affinity IIb, receptor isoform
1 [Homo sapiens]
Length = 310
Score = 26.6 bits (57), Expect = 7.1
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 8/65 (12%)
Query: 37 QAPFSWPAGALVAQACHAATAALHTHRDHPHTAAYLQELGRMRKVVLEAPDETTLKELAE 96
QAP S P G +VA A AA+ AA + + +K + P +E+ E
Sbjct: 215 QAPSSSPMGIIVAVVTGIAVAAI--------VAAVVALIYCRKKRISALPGYPECREMGE 266
Query: 97 TLQQK 101
TL +K
Sbjct: 267 TLPEK 271
>gi|20665034 tenascin XB isoform 2 [Homo sapiens]
Length = 673
Score = 26.6 bits (57), Expect = 7.1
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
Query: 66 PHTAAYLQELGRMRKVVLEAPDETTLKELAETLQQKNIDHMLWLEQP 112
PH A +Q R VLE+P + E+ ET + N W+ P
Sbjct: 168 PHKADSIQGTARTLSPVLESPRDLQFSEIRETSAKVN-----WMPPP 209
>gi|188528648 tenascin XB isoform 1 precursor [Homo sapiens]
Length = 4242
Score = 26.6 bits (57), Expect = 7.1
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
Query: 66 PHTAAYLQELGRMRKVVLEAPDETTLKELAETLQQKNIDHMLWLEQP 112
PH A +Q R VLE+P + E+ ET + N W+ P
Sbjct: 3737 PHKADSIQGTARTLSPVLESPRDLQFSEIRETSAKVN-----WMPPP 3778
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.133 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,427,191
Number of Sequences: 37866
Number of extensions: 207162
Number of successful extensions: 640
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 637
Number of HSP's gapped (non-prelim): 17
length of query: 140
length of database: 18,247,518
effective HSP length: 92
effective length of query: 48
effective length of database: 14,763,846
effective search space: 708664608
effective search space used: 708664608
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.