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Search of human proteins with 13443012
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|13443012 solute carrier family 30 (zinc transporter), member
5 isoform 2 [Homo sapiens]
(118 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|13443012 solute carrier family 30 (zinc transporter), member ... 238 6e-64
gi|20070323 solute carrier family 30 (zinc transporter), member ... 186 4e-48
gi|31982899 seven in absentia homolog 2 [Homo sapiens] 32 0.14
gi|58331222 ATPase, class VI, type 11C isoform b [Homo sapiens] 29 0.70
gi|40316839 ATPase, class VI, type 11C isoform a [Homo sapiens] 29 0.70
gi|24497519 mannosidase, alpha, class 1A, member 1 [Homo sapiens] 28 1.2
gi|82617546 cyclic nucleotide gated channel alpha 4 [Homo sapiens] 27 3.5
gi|33149331 nucleoredoxin [Homo sapiens] 27 4.5
gi|110347449 POU domain, class 4, transcription factor 1 [Homo s... 27 4.5
gi|31982919 zinc finger protein 430 [Homo sapiens] 26 5.9
gi|239757212 PREDICTED: similar to hCG1773661 [Homo sapiens] 26 7.7
gi|239753621 PREDICTED: hypothetical protein [Homo sapiens] 26 7.7
gi|239751718 PREDICTED: similar to hCG1773661 [Homo sapiens] 26 7.7
gi|239746221 PREDICTED: hypothetical protein XP_002343677 [Homo ... 26 7.7
gi|149588930 gastrulation brain homeo box 1 [Homo sapiens] 26 7.7
>gi|13443012 solute carrier family 30 (zinc transporter), member 5
isoform 2 [Homo sapiens]
Length = 118
Score = 238 bits (608), Expect = 6e-64
Identities = 118/118 (100%), Positives = 118/118 (100%)
Query: 1 MEEKYGGDVLAGPGGGGGLGPVDVPSARLTKYIVLLCFTKFLKAVGLFESYDLLKAVHIV 60
MEEKYGGDVLAGPGGGGGLGPVDVPSARLTKYIVLLCFTKFLKAVGLFESYDLLKAVHIV
Sbjct: 1 MEEKYGGDVLAGPGGGGGLGPVDVPSARLTKYIVLLCFTKFLKAVGLFESYDLLKAVHIV 60
Query: 61 QFIFILKLGTAFFMVLFQKPFSSGKTITKHQIIGSLKIPGRKEFKDKKLNDPRKLVGN 118
QFIFILKLGTAFFMVLFQKPFSSGKTITKHQIIGSLKIPGRKEFKDKKLNDPRKLVGN
Sbjct: 61 QFIFILKLGTAFFMVLFQKPFSSGKTITKHQIIGSLKIPGRKEFKDKKLNDPRKLVGN 118
>gi|20070323 solute carrier family 30 (zinc transporter), member 5
isoform 1 [Homo sapiens]
Length = 765
Score = 186 bits (471), Expect = 4e-48
Identities = 93/97 (95%), Positives = 93/97 (95%)
Query: 1 MEEKYGGDVLAGPGGGGGLGPVDVPSARLTKYIVLLCFTKFLKAVGLFESYDLLKAVHIV 60
MEEKYGGDVLAGPGGGGGLGPVDVPSARLTKYIVLLCFTKFLKAVGLFESYDLLKAVHIV
Sbjct: 1 MEEKYGGDVLAGPGGGGGLGPVDVPSARLTKYIVLLCFTKFLKAVGLFESYDLLKAVHIV 60
Query: 61 QFIFILKLGTAFFMVLFQKPFSSGKTITKHQIIGSLK 97
QFIFILKLGTAFFMVLFQKPFSSGKTITKHQ I K
Sbjct: 61 QFIFILKLGTAFFMVLFQKPFSSGKTITKHQWIKIFK 97
>gi|31982899 seven in absentia homolog 2 [Homo sapiens]
Length = 324
Score = 31.6 bits (70), Expect = 0.14
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 9 VLAGPGGGGGLGPVDVPSARLTK-YIVLLCFTKFLKAV 45
V++GPGGGGG GPV LT + +CF L +
Sbjct: 54 VISGPGGGGGAGPVSPQHHELTSLFECPVCFDYVLPPI 91
>gi|58331222 ATPase, class VI, type 11C isoform b [Homo sapiens]
Length = 1119
Score = 29.3 bits (64), Expect = 0.70
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 65 ILKLGTAF--FMVLFQK--PFSSGKTITKHQIIGSLKIPGRKEFKDKKLND 111
+LK+ T F FMVLF P S T+ + +GS I K+F D+++N+
Sbjct: 340 VLKMFTDFLSFMVLFNFIIPVSMYVTVEMQKFLGSFFISWDKDFYDEEINE 390
>gi|40316839 ATPase, class VI, type 11C isoform a [Homo sapiens]
Length = 1132
Score = 29.3 bits (64), Expect = 0.70
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 65 ILKLGTAF--FMVLFQK--PFSSGKTITKHQIIGSLKIPGRKEFKDKKLND 111
+LK+ T F FMVLF P S T+ + +GS I K+F D+++N+
Sbjct: 340 VLKMFTDFLSFMVLFNFIIPVSMYVTVEMQKFLGSFFISWDKDFYDEEINE 390
>gi|24497519 mannosidase, alpha, class 1A, member 1 [Homo sapiens]
Length = 653
Score = 28.5 bits (62), Expect = 1.2
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 6 GGDVLAGPGGGGGLGPVDVPSARLT-KYIVLLCFTKFL 42
GG + G GGGGG + RLT K+++LL F+ F+
Sbjct: 15 GGVLGGGLGGGGGRKGSGPAALRLTEKFVLLLVFSAFI 52
>gi|82617546 cyclic nucleotide gated channel alpha 4 [Homo sapiens]
Length = 575
Score = 26.9 bits (58), Expect = 3.5
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 19 LGPVDVPSARLTKYIVLLCFTKFLKAVGLFESYD 52
L P DV RL + L +FL+A LFE++D
Sbjct: 122 LMPTDVVYVRLGPHTPTLRLNRFLRAPRLFEAFD 155
>gi|33149331 nucleoredoxin [Homo sapiens]
Length = 435
Score = 26.6 bits (57), Expect = 4.5
Identities = 13/30 (43%), Positives = 14/30 (46%)
Query: 7 GDVLAGPGGGGGLGPVDVPSARLTKYIVLL 36
GD AGPG G G G P R IV +
Sbjct: 62 GDAAAGPGPGAGAGAAAEPEPRRRLEIVFV 91
>gi|110347449 POU domain, class 4, transcription factor 1 [Homo
sapiens]
Length = 419
Score = 26.6 bits (57), Expect = 4.5
Identities = 11/16 (68%), Positives = 11/16 (68%)
Query: 6 GGDVLAGPGGGGGLGP 21
GG GPGGGGG GP
Sbjct: 156 GGGPGGGPGGGGGGGP 171
>gi|31982919 zinc finger protein 430 [Homo sapiens]
Length = 570
Score = 26.2 bits (56), Expect = 5.9
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 70 TAFFMVLFQKPFSSGKTITKHQIIGSLKIPGRKEFKDKKLNDPRKLV 116
T++ + K FS T+TKH++I + + P E K N L+
Sbjct: 511 TSYKYLECDKAFSQSSTLTKHKVIHTGEKPYNCEEYGKAFNQSSNLI 557
>gi|239757212 PREDICTED: similar to hCG1773661 [Homo sapiens]
Length = 1119
Score = 25.8 bits (55), Expect = 7.7
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 79 KPFSSGKTITKHQIIGSLKIPGRKEFKDKKLNDPRKL 115
K FS +TKH+II S++ P + E K N L
Sbjct: 1006 KAFSQSSILTKHKIIHSVEKPYKCEECGKAFNQSSHL 1042
>gi|239753621 PREDICTED: hypothetical protein [Homo sapiens]
Length = 93
Score = 25.8 bits (55), Expect = 7.7
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 5 YGGDVLAGPGGGGGLGP 21
+GG+VL+ G GGG GP
Sbjct: 55 HGGEVLSCTGWGGGAGP 71
>gi|239751718 PREDICTED: similar to hCG1773661 [Homo sapiens]
Length = 1119
Score = 25.8 bits (55), Expect = 7.7
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 79 KPFSSGKTITKHQIIGSLKIPGRKEFKDKKLNDPRKL 115
K FS +TKH+II S++ P + E K N L
Sbjct: 1006 KAFSQSSILTKHKIIHSVEKPYKCEECGKAFNQSSHL 1042
>gi|239746221 PREDICTED: hypothetical protein XP_002343677 [Homo
sapiens]
Length = 1119
Score = 25.8 bits (55), Expect = 7.7
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 79 KPFSSGKTITKHQIIGSLKIPGRKEFKDKKLNDPRKL 115
K FS +TKH+II S++ P + E K N L
Sbjct: 1006 KAFSQSSILTKHKIIHSVEKPYKCEECGKAFNQSSHL 1042
>gi|149588930 gastrulation brain homeo box 1 [Homo sapiens]
Length = 363
Score = 25.8 bits (55), Expect = 7.7
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 1 MEEKYGGDVLAGPGGGGGLGP 21
M+ GG G GGGGG GP
Sbjct: 1 MQRAGGGSAPGGNGGGGGGGP 21
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.146 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,659,779
Number of Sequences: 37866
Number of extensions: 181235
Number of successful extensions: 979
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 949
Number of HSP's gapped (non-prelim): 32
length of query: 118
length of database: 18,247,518
effective HSP length: 88
effective length of query: 30
effective length of database: 14,915,310
effective search space: 447459300
effective search space used: 447459300
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.