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Search of human proteins with 60218913
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|60218913 calcyclin binding protein isoform 2 [Homo sapiens]
(185 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|7656952 calcyclin binding protein isoform 1 [Homo sapiens] 374 e-104
gi|60218913 calcyclin binding protein isoform 2 [Homo sapiens] 374 e-104
gi|195963398 suppressor of G2 allele of SKP1 isoform a [Homo sap... 55 3e-08
gi|5730041 suppressor of G2 allele of SKP1 isoform b [Homo sapiens] 55 3e-08
gi|224593278 DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Homo sap... 35 0.037
gi|75677576 dyslexia susceptibility 1 candidate 1 isoform c [Hom... 32 0.31
gi|75677567 dyslexia susceptibility 1 candidate 1 isoform b [Hom... 32 0.31
gi|75677570 dyslexia susceptibility 1 candidate 1 isoform a [Hom... 32 0.31
gi|113722133 senataxin [Homo sapiens] 31 0.69
gi|207113147 heat shock transcription factor 2 isoform b [Homo s... 30 0.91
gi|45827701 pad-1-like [Homo sapiens] 29 2.6
gi|239756241 PREDICTED: golgi autoantigen, golgin subfamily a-li... 28 3.4
gi|169218146 PREDICTED: similar to neuron navigator 3, partial [... 28 4.5
gi|84875541 cytochrome b5 reductase 4 [Homo sapiens] 28 4.5
gi|114155142 nuclear pore complex-associated protein TPR [Homo s... 28 4.5
gi|120953251 neuron navigator 3 [Homo sapiens] 28 4.5
gi|110815834 F-box and WD-40 domain protein 10 [Homo sapiens] 28 4.5
gi|19923540 ArfGAP with SH3 domain, ankyrin repeat and PH domain... 28 5.9
>gi|7656952 calcyclin binding protein isoform 1 [Homo sapiens]
Length = 228
Score = 374 bits (961), Expect = e-104
Identities = 185/185 (100%), Positives = 185/185 (100%)
Query: 1 MQQKSQKKAELLDNEKPAAVVAPITTGYTVKISNYGWDQSDKFVKIYITLTGVHQVPTEN 60
MQQKSQKKAELLDNEKPAAVVAPITTGYTVKISNYGWDQSDKFVKIYITLTGVHQVPTEN
Sbjct: 44 MQQKSQKKAELLDNEKPAAVVAPITTGYTVKISNYGWDQSDKFVKIYITLTGVHQVPTEN 103
Query: 61 VQVHFTERSFDLLVKNLNGKSYSMIVNNLLKPISVEGSSKKVKTDTVLILCRKKVENTRW 120
VQVHFTERSFDLLVKNLNGKSYSMIVNNLLKPISVEGSSKKVKTDTVLILCRKKVENTRW
Sbjct: 104 VQVHFTERSFDLLVKNLNGKSYSMIVNNLLKPISVEGSSKKVKTDTVLILCRKKVENTRW 163
Query: 121 DYLTQVEKECKEKEKPSYDTETDPSEGLMNVLKKIYEDGDDDMKRTINKAWVESREKQAK 180
DYLTQVEKECKEKEKPSYDTETDPSEGLMNVLKKIYEDGDDDMKRTINKAWVESREKQAK
Sbjct: 164 DYLTQVEKECKEKEKPSYDTETDPSEGLMNVLKKIYEDGDDDMKRTINKAWVESREKQAK 223
Query: 181 GDTEF 185
GDTEF
Sbjct: 224 GDTEF 228
>gi|60218913 calcyclin binding protein isoform 2 [Homo sapiens]
Length = 185
Score = 374 bits (961), Expect = e-104
Identities = 185/185 (100%), Positives = 185/185 (100%)
Query: 1 MQQKSQKKAELLDNEKPAAVVAPITTGYTVKISNYGWDQSDKFVKIYITLTGVHQVPTEN 60
MQQKSQKKAELLDNEKPAAVVAPITTGYTVKISNYGWDQSDKFVKIYITLTGVHQVPTEN
Sbjct: 1 MQQKSQKKAELLDNEKPAAVVAPITTGYTVKISNYGWDQSDKFVKIYITLTGVHQVPTEN 60
Query: 61 VQVHFTERSFDLLVKNLNGKSYSMIVNNLLKPISVEGSSKKVKTDTVLILCRKKVENTRW 120
VQVHFTERSFDLLVKNLNGKSYSMIVNNLLKPISVEGSSKKVKTDTVLILCRKKVENTRW
Sbjct: 61 VQVHFTERSFDLLVKNLNGKSYSMIVNNLLKPISVEGSSKKVKTDTVLILCRKKVENTRW 120
Query: 121 DYLTQVEKECKEKEKPSYDTETDPSEGLMNVLKKIYEDGDDDMKRTINKAWVESREKQAK 180
DYLTQVEKECKEKEKPSYDTETDPSEGLMNVLKKIYEDGDDDMKRTINKAWVESREKQAK
Sbjct: 121 DYLTQVEKECKEKEKPSYDTETDPSEGLMNVLKKIYEDGDDDMKRTINKAWVESREKQAK 180
Query: 181 GDTEF 185
GDTEF
Sbjct: 181 GDTEF 185
>gi|195963398 suppressor of G2 allele of SKP1 isoform a [Homo
sapiens]
Length = 365
Score = 55.1 bits (131), Expect = 3e-08
Identities = 47/170 (27%), Positives = 79/170 (46%), Gaps = 38/170 (22%)
Query: 35 YGWDQSDKFVKIYITLTGVHQVPTENVQVHFTERSFDLLVKNLNGKSYSMIVNNLLKPIS 94
Y W Q++ V I + + V + +V V F+E+ LVK +G+ Y++ + LL PI
Sbjct: 174 YDWYQTESQVVITLMIKNVQK---NDVNVEFSEKELSALVKLPSGEDYNLKL-ELLHPII 229
Query: 95 VEGSSKKVKTDTVLILCRKKVENTRWDYL------------------------------T 124
E S+ KV T + + KK E RW+ L
Sbjct: 230 PEQSTFKV-LSTKIEIKLKKPEAVRWEKLEGQGDVPTPKQFVADVKNLYPSSSPYTRNWD 288
Query: 125 QVEKECKEKEKPSYDTETDPSEGLMNVLKKIYEDGDDDMKRTINKAWVES 174
++ E KE+EK + + + L + ++IY DG D++KR +NK+++ES
Sbjct: 289 KLVGEIKEEEK---NEKLEGDAALNRLFQQIYSDGSDEVKRAMNKSFMES 335
>gi|5730041 suppressor of G2 allele of SKP1 isoform b [Homo sapiens]
Length = 333
Score = 55.1 bits (131), Expect = 3e-08
Identities = 47/170 (27%), Positives = 79/170 (46%), Gaps = 38/170 (22%)
Query: 35 YGWDQSDKFVKIYITLTGVHQVPTENVQVHFTERSFDLLVKNLNGKSYSMIVNNLLKPIS 94
Y W Q++ V I + + V + +V V F+E+ LVK +G+ Y++ + LL PI
Sbjct: 142 YDWYQTESQVVITLMIKNVQK---NDVNVEFSEKELSALVKLPSGEDYNLKL-ELLHPII 197
Query: 95 VEGSSKKVKTDTVLILCRKKVENTRWDYL------------------------------T 124
E S+ KV T + + KK E RW+ L
Sbjct: 198 PEQSTFKV-LSTKIEIKLKKPEAVRWEKLEGQGDVPTPKQFVADVKNLYPSSSPYTRNWD 256
Query: 125 QVEKECKEKEKPSYDTETDPSEGLMNVLKKIYEDGDDDMKRTINKAWVES 174
++ E KE+EK + + + L + ++IY DG D++KR +NK+++ES
Sbjct: 257 KLVGEIKEEEK---NEKLEGDAALNRLFQQIYSDGSDEVKRAMNKSFMES 303
>gi|224593278 DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Homo
sapiens]
Length = 796
Score = 35.0 bits (79), Expect = 0.037
Identities = 27/109 (24%), Positives = 53/109 (48%), Gaps = 15/109 (13%)
Query: 79 GKSYSMIVNN---LLKPISVEGSSKKVKT----DTVLILCRKKVENTRWDYLTQVEKECK 131
G+S S++ + +LK I V+ + VK V++ R K+E D ++ E +
Sbjct: 561 GRSVSLVGEDERKMLKEI-VKAAKAPVKARILPQDVILKFRDKIEKMEKDVYAVLQLEAE 619
Query: 132 EKEKPSYDTETDPSEGLMNVLKKIYEDGDDDMKRTINKAWVESREKQAK 180
EK E SE +N K++ E G + + + ++W +++E++ K
Sbjct: 620 EK-------EMQQSEAQINTAKRLLEKGKEAVVQEPERSWFQTKEERKK 661
>gi|75677576 dyslexia susceptibility 1 candidate 1 isoform c [Homo
sapiens]
Length = 381
Score = 32.0 bits (71), Expect = 0.31
Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 24/112 (21%)
Query: 30 VKISNYGWDQSDKFVKIYITLTGV-----HQVPTEN-VQVHFTERSFDLLVKNLNGKSYS 83
+++S+Y W Q+ V + + L GV TEN ++V+F F+
Sbjct: 3 LQVSDYSWQQTKTAVFLSLPLKGVCVRDTDVFCTENYLKVNFPPFLFEAF---------- 52
Query: 84 MIVNNLLKPISVEGSSKKVKTDTVLILCRKKVENTRWDYL--TQVEKECKEK 133
L PI E S K+ DT++ KK E W+ L T V+KE ++
Sbjct: 53 -----LYAPIDDESSKAKIGNDTIVFTLYKK-EAAMWETLSVTGVDKEMMQR 98
>gi|75677567 dyslexia susceptibility 1 candidate 1 isoform b [Homo
sapiens]
Length = 376
Score = 32.0 bits (71), Expect = 0.31
Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 24/112 (21%)
Query: 30 VKISNYGWDQSDKFVKIYITLTGV-----HQVPTEN-VQVHFTERSFDLLVKNLNGKSYS 83
+++S+Y W Q+ V + + L GV TEN ++V+F F+
Sbjct: 3 LQVSDYSWQQTKTAVFLSLPLKGVCVRDTDVFCTENYLKVNFPPFLFEAF---------- 52
Query: 84 MIVNNLLKPISVEGSSKKVKTDTVLILCRKKVENTRWDYL--TQVEKECKEK 133
L PI E S K+ DT++ KK E W+ L T V+KE ++
Sbjct: 53 -----LYAPIDDESSKAKIGNDTIVFTLYKK-EAAMWETLSVTGVDKEMMQR 98
>gi|75677570 dyslexia susceptibility 1 candidate 1 isoform a [Homo
sapiens]
Length = 420
Score = 32.0 bits (71), Expect = 0.31
Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 24/112 (21%)
Query: 30 VKISNYGWDQSDKFVKIYITLTGV-----HQVPTEN-VQVHFTERSFDLLVKNLNGKSYS 83
+++S+Y W Q+ V + + L GV TEN ++V+F F+
Sbjct: 3 LQVSDYSWQQTKTAVFLSLPLKGVCVRDTDVFCTENYLKVNFPPFLFEAF---------- 52
Query: 84 MIVNNLLKPISVEGSSKKVKTDTVLILCRKKVENTRWDYL--TQVEKECKEK 133
L PI E S K+ DT++ KK E W+ L T V+KE ++
Sbjct: 53 -----LYAPIDDESSKAKIGNDTIVFTLYKK-EAAMWETLSVTGVDKEMMQR 98
>gi|113722133 senataxin [Homo sapiens]
Length = 2677
Score = 30.8 bits (68), Expect = 0.69
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 75 KNLNGKSYSMIVNNLLKPISVEGSSKKVKTDTVLILC--RKKVENTRWDYLTQVEKECKE 132
K + G Y ++ N K S E S+ K+K + VL+ V+ + + +++CK+
Sbjct: 1971 KTIVGLLYRLLTENQRKGHSDENSNAKIKQNRVLVCAPSNAAVDELMKKIILEFKEKCKD 2030
Query: 133 KEKP 136
K+ P
Sbjct: 2031 KKNP 2034
>gi|207113147 heat shock transcription factor 2 isoform b [Homo
sapiens]
Length = 518
Score = 30.4 bits (67), Expect = 0.91
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 59 ENVQVHFTERSF----DLLVKNLNGKSYSMIVNNLLKPISVEGSSKKVKTDTVLI 109
E+ Q + R F DLLV + N K NN+++P+S EG K K D LI
Sbjct: 372 EDFQAMLSGRQFSIDPDLLVDSEN-KGLETTKNNVVQPVSEEGRKSKSKPDKQLI 425
>gi|45827701 pad-1-like [Homo sapiens]
Length = 2298
Score = 28.9 bits (63), Expect = 2.6
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Query: 81 SYSMIVNNLLKPISVEGSSKKVKTDTVLILCRKKVENTRWDYLTQVEKECKEKEKPSYDT 140
SY+ N+L+ I ++ ++ TV +L + WDY+T+ +EC K Y
Sbjct: 407 SYTQSGNSLISAIKENRNASEI-VKTVNLLITSLSTDFLWDYMTRCFEECFRPVKQRYSV 465
Query: 141 ETDPS 145
S
Sbjct: 466 RNSVS 470
>gi|239756241 PREDICTED: golgi autoantigen, golgin subfamily a-like
[Homo sapiens]
Length = 899
Score = 28.5 bits (62), Expect = 3.4
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 116 ENTRWDYLTQVEKECKEKEKPSYDTETD--PSEGLMNVLKKIYEDGDDDMKRTINKAWVE 173
E WD ++EK+ +E+EK ++D E E + KK+ E +++M R + E
Sbjct: 557 EQKMWDQEERMEKKTQEQEKKTWDQEEKMREEERMREREKKMRE--EEEMMREQEEKMQE 614
Query: 174 SREK 177
EK
Sbjct: 615 QEEK 618
>gi|169218146 PREDICTED: similar to neuron navigator 3, partial
[Homo sapiens]
Length = 733
Score = 28.1 bits (61), Expect = 4.5
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 110 LCRKKVENTRWDYLTQVEKECKEKEKPSYDTETDPSEGLMNVLKKIYE 157
L + + E+ ++ T ++ K P DTE DP LMN+L K+ E
Sbjct: 659 LLQLRPEDVGYESCTSTKEATTSKHIPQTDTEGDP---LMNMLMKLQE 703
>gi|84875541 cytochrome b5 reductase 4 [Homo sapiens]
Length = 521
Score = 28.1 bits (61), Expect = 4.5
Identities = 27/120 (22%), Positives = 52/120 (43%), Gaps = 7/120 (5%)
Query: 6 QKKAELLDNEKPAAVVAPITTGYTVKISNYGWDQSDKFVKIYITLTGVHQVPTENVQVHF 65
+++ ++L+ P + V +Y W Q+D V I I T + +++ V
Sbjct: 141 EEEKKVLNGMLPKSQVTDTLAKEGPSYPSYDWFQTDSLVTIAI-YTKQKDINLDSIIVDH 199
Query: 66 TERSF--DLLVKNLNGKSYSMIVNNLLKPISVEGSSKKVKTDTVLILCRKKVENTRWDYL 123
SF + ++K+ + + + + + SV K + VL +K ENT WD+L
Sbjct: 200 QNDSFRAETIIKDCLYLIHIGLSHEVQEDFSVRVVESVGKIEIVL----QKKENTSWDFL 255
>gi|114155142 nuclear pore complex-associated protein TPR [Homo
sapiens]
Length = 2363
Score = 28.1 bits (61), Expect = 4.5
Identities = 26/101 (25%), Positives = 47/101 (46%), Gaps = 12/101 (11%)
Query: 94 SVEGSSKKVKTDTVLILCRKKVE---NTRWDYLTQVEKECKEKEKPSYDTETDPSEGL-- 148
S+E S K K T + RK +E ++ TQ+EK+ E EK + + D +
Sbjct: 971 SLEESLNKEKQVTEEV--RKNIEVRLKESAEFQTQLEKKLMEVEKEKQELQDDKRRAIES 1028
Query: 149 ----MNVLKKIYEDGDDDMKRTINKAWVE-SREKQAKGDTE 184
++ LKK ++++ + +A S E+QA+ D +
Sbjct: 1029 MEQQLSELKKTLSSVQNEVQEALQRASTALSNEQQARRDCQ 1069
>gi|120953251 neuron navigator 3 [Homo sapiens]
Length = 2363
Score = 28.1 bits (61), Expect = 4.5
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 110 LCRKKVENTRWDYLTQVEKECKEKEKPSYDTETDPSEGLMNVLKKIYE 157
L + + E+ ++ T ++ K P DTE DP LMN+L K+ E
Sbjct: 2289 LLQLRPEDVGYESCTSTKEATTSKHIPQTDTEGDP---LMNMLMKLQE 2333
>gi|110815834 F-box and WD-40 domain protein 10 [Homo sapiens]
Length = 1051
Score = 28.1 bits (61), Expect = 4.5
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Query: 95 VEGSSKKVKTDTVLILCRKKVENTRWDYLTQVEKECKEKEKPSYDTETDPSEGLMNVLKK 154
++G+ V T++ +++ + E+ +W Y + K+ K KEK E LM +L K
Sbjct: 665 IQGNRMVVNTESNVLMFQ--FEHIKWQYAVEKTKQKKNKEK----EEEKEENSLMEILSK 718
>gi|19923540 ArfGAP with SH3 domain, ankyrin repeat and PH domain 3
isoform a [Homo sapiens]
Length = 903
Score = 27.7 bits (60), Expect = 5.9
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 148 LMNVLKKIYEDGDDDMKRTINKAWVESREKQAKGDTE 184
L +++K DG D K+ + KAW + K AK + E
Sbjct: 128 LDSLMKGQLRDGRQDSKKQLEKAWKDYEAKMAKLEKE 164
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.310 0.128 0.362
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,713,984
Number of Sequences: 37866
Number of extensions: 278184
Number of successful extensions: 757
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 745
Number of HSP's gapped (non-prelim): 22
length of query: 185
length of database: 18,247,518
effective HSP length: 96
effective length of query: 89
effective length of database: 14,612,382
effective search space: 1300501998
effective search space used: 1300501998
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.