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Search of human proteins with 60218897
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|60218897 YY1 associated factor 2 [Homo sapiens]
(180 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|60218897 YY1 associated factor 2 [Homo sapiens] 363 e-101
gi|112363092 RING1 and YY1 binding protein [Homo sapiens] 230 6e-61
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 44 6e-05
gi|42741684 zinc finger protein 265 isoform 1 [Homo sapiens] 42 4e-04
gi|42741682 zinc finger protein 265 isoform 2 [Homo sapiens] 42 4e-04
gi|4759100 splicing factor, arginine/serine-rich 11 [Homo sapiens] 41 6e-04
gi|156104891 general transcription factor IIF, polypeptide 1, 74... 41 6e-04
gi|150418007 RAN binding protein 2 [Homo sapiens] 40 0.001
gi|62860046 zinc finger, RAN-binding domain containing 3 [Homo s... 40 0.001
gi|169166609 PREDICTED: similar to ribonucleic acid binding prot... 39 0.002
gi|113415994 PREDICTED: similar to ribonucleic acid binding prot... 39 0.002
gi|113415504 PREDICTED: similar to ribonucleic acid binding prot... 39 0.002
gi|169166499 PREDICTED: similar to ribonucleic acid binding prot... 39 0.002
gi|113415498 PREDICTED: similar to ribonucleic acid binding prot... 39 0.002
gi|88973230 PREDICTED: similar to ribonucleic acid binding prote... 39 0.002
gi|6857826 RNA-binding protein S1, serine-rich domain [Homo sapi... 39 0.002
gi|18379334 RNA-binding protein S1, serine-rich domain [Homo sap... 39 0.002
gi|150456436 hypothetical protein LOC55719 isoform 1 [Homo sapiens] 38 0.005
gi|209915547 hypothetical protein LOC55719 isoform 2 [Homo sapiens] 38 0.005
gi|55749769 CWC22 spliceosome-associated protein homolog [Homo s... 37 0.007
gi|60302875 shugoshin-like 1 isoform A1 [Homo sapiens] 37 0.009
gi|60302870 shugoshin-like 1 isoform A2 [Homo sapiens] 37 0.009
gi|8923106 zinc finger, CCHC domain containing 10 [Homo sapiens] 37 0.009
gi|24430146 nucleoporin 153kDa [Homo sapiens] 37 0.012
gi|110815809 zinc finger, RAN-binding domain containing 1 protei... 37 0.012
gi|17978469 cyclin T2 isoform b [Homo sapiens] 37 0.012
gi|4502629 cyclin T2 isoform a [Homo sapiens] 37 0.012
gi|14149716 protein phosphatase 1, regulatory subunit 12C [Homo ... 37 0.012
gi|239750213 PREDICTED: hypothetical protein [Homo sapiens] 36 0.020
gi|38788260 bromodomain PHD finger transcription factor isoform ... 36 0.020
>gi|60218897 YY1 associated factor 2 [Homo sapiens]
Length = 180
Score = 363 bits (931), Expect = e-101
Identities = 180/180 (100%), Positives = 180/180 (100%)
Query: 1 MGDKKSPTRPKRQPKPSSDEGYWDCSVCTFRNSAEAFKCMMCDVRKGTSTRKPRPVSQLV 60
MGDKKSPTRPKRQPKPSSDEGYWDCSVCTFRNSAEAFKCMMCDVRKGTSTRKPRPVSQLV
Sbjct: 1 MGDKKSPTRPKRQPKPSSDEGYWDCSVCTFRNSAEAFKCMMCDVRKGTSTRKPRPVSQLV 60
Query: 61 AQQVTQQFVPPTQSKKEKKDKVEKEKSEKETTSKKNSHKKTRPRLKNVDRSSAQHLEVTV 120
AQQVTQQFVPPTQSKKEKKDKVEKEKSEKETTSKKNSHKKTRPRLKNVDRSSAQHLEVTV
Sbjct: 61 AQQVTQQFVPPTQSKKEKKDKVEKEKSEKETTSKKNSHKKTRPRLKNVDRSSAQHLEVTV 120
Query: 121 GDLTVIITDFKEKTKSPPASSAASADQHSQSGSSSDNTERGMSRSSSPRGEASSLNGESH 180
GDLTVIITDFKEKTKSPPASSAASADQHSQSGSSSDNTERGMSRSSSPRGEASSLNGESH
Sbjct: 121 GDLTVIITDFKEKTKSPPASSAASADQHSQSGSSSDNTERGMSRSSSPRGEASSLNGESH 180
>gi|112363092 RING1 and YY1 binding protein [Homo sapiens]
Length = 228
Score = 230 bits (586), Expect = 6e-61
Identities = 125/225 (55%), Positives = 153/225 (68%), Gaps = 46/225 (20%)
Query: 1 MGDKKSPTRPKRQPKPSSDEGYWDCSVCTFRNSAEAFKCMMCDVRKGTSTRKPRPVSQLV 60
MGDKKSPTRPKRQ KP++DEG+WDCSVCTFRNSAEAFKC +CDVRKGTSTRKPR SQLV
Sbjct: 3 MGDKKSPTRPKRQAKPAADEGFWDCSVCTFRNSAEAFKCSICDVRKGTSTRKPRINSQLV 62
Query: 61 AQQVTQQFVPPTQSKKEKKDKVEKEKSEKE--------TTSKKNSHKKT----------- 101
AQQV QQ+ P KKEKK+KVEK+ EK + +KKN++KKT
Sbjct: 63 AQQVAQQYATPPPPKKEKKEKVEKQDKEKPEKDKEISPSVTKKNTNKKTKPKSDILKDPP 122
Query: 102 ----------------------RPRLKNVDRSSAQHLEVTVGDLTVIITDFKEKTKSPPA 139
RPRLKNVDRS+AQ L VTVG++TVIITDFKEKT+S
Sbjct: 123 SEANSIQSANATTKTSETNHTSRPRLKNVDRSTAQQLAVTVGNVTVIITDFKEKTRSSST 182
Query: 140 S-----SAASADQHSQSGSSSDNTERGMSRSSSPRGEASSLNGES 179
S S+A ++Q +QS S S++T++G SRSS+P+G+ S++N ES
Sbjct: 183 SSSTVTSSAGSEQQNQSSSGSESTDKGSSRSSTPKGDMSAVNDES 227
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 44.3 bits (103), Expect = 6e-05
Identities = 35/137 (25%), Positives = 62/137 (45%), Gaps = 5/137 (3%)
Query: 46 KGTSTRKPRPVSQLVAQQVTQQFVPPTQSKKEKKDKVEKEKSEKETTSKKNSHKKTRPRL 105
K + P+P S + ++ P + KK+KKD+ + +S +K S KK + R
Sbjct: 161 KQPAPEPPKPYSLVRESSSSRSPTPKQKKKKKKKDRGRRSESSSPRRERKKSSKKKKHRS 220
Query: 106 KNVDRSSAQHLEVTVGDLTVIITDFKEKTKS---PPASSAASADQHSQSGSSSDNTERGM 162
++ + +H T +++++S P S A + S SSSD T R
Sbjct: 221 ES-ESKKRKHRSPTPKSKRKSKDKKRKRSRSTTPAPKSRRAHRSTSADSASSSD-TSRSR 278
Query: 163 SRSSSPRGEASSLNGES 179
SRS++ + ++L G S
Sbjct: 279 SRSAAAKTHTTALAGRS 295
Score = 33.1 bits (74), Expect = 0.13
Identities = 19/52 (36%), Positives = 28/52 (53%)
Query: 128 TDFKEKTKSPPASSAASADQHSQSGSSSDNTERGMSRSSSPRGEASSLNGES 179
T K K +S +SS++S+ S S SSS ++ S SSS +SS + S
Sbjct: 2599 TPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPS 2650
Score = 30.0 bits (66), Expect = 1.1
Identities = 37/143 (25%), Positives = 59/143 (41%), Gaps = 14/143 (9%)
Query: 48 TSTRKPRPVSQLVAQQVTQQFVPPTQSKKEKKDKVEKEKSEK------ETTSKKNSHKKT 101
TS R P P S++ Q +Q +PP Q + + V S++ +TT S +
Sbjct: 2420 TSERAPSPSSRM-GQAPSQSLLPPAQD--QPRSPVPSAFSDQSRCLIAQTTPVAGSQSLS 2476
Query: 102 RPRLKNVDRSSAQHLEV-TVGDLTVIITDFKEKTKSP----PASSAASADQHSQSGSSSD 156
+ S+ H + +V V +D E S P++ AA + SSS
Sbjct: 2477 SGAVATTTSSAGDHNGMLSVPAPGVPHSDVGEPPASTGAQQPSALAALQPAKERRSSSSS 2536
Query: 157 NTERGMSRSSSPRGEASSLNGES 179
++ S SSS +SS +G S
Sbjct: 2537 SSSSSSSSSSSSSSSSSSSSGSS 2559
Score = 29.6 bits (65), Expect = 1.5
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 132 EKTKSPPASSAASADQHSQSGSSSDNTERGMSRSSSPRGEASSL 175
+ K +SS++S+ S S SSS ++ S SSS E SSL
Sbjct: 2525 QPAKERRSSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSSL 2568
Score = 28.9 bits (63), Expect = 2.5
Identities = 27/113 (23%), Positives = 43/113 (38%), Gaps = 6/113 (5%)
Query: 73 QSKKEKKDKVEKEKSEKETTSKKNSHKKTRPRLKNVDRSSAQHL----EVTVGDLTVIIT 128
Q KE++ S ++S +S + + S L EV + +
Sbjct: 2525 QPAKERRSSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSSLPVQPEVALKRVPSPTP 2584
Query: 129 DFKEKTKS--PPASSAASADQHSQSGSSSDNTERGMSRSSSPRGEASSLNGES 179
KE + PP + A + S S SSS ++ S SSS +SS + S
Sbjct: 2585 APKEAVREGRPPEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2637
Score = 27.7 bits (60), Expect = 5.6
Identities = 34/170 (20%), Positives = 59/170 (34%), Gaps = 16/170 (9%)
Query: 5 KSPTRPKRQPKPSSDEGYWDCSVCTFRNSAEAFKCMMCDVRKGTSTRKPRPVSQLVAQQV 64
+S + P+ + KP + S + A A + + R G+S++ P + +
Sbjct: 1597 RSGSSPEVKDKPRAAPRAQSGSDSSPEPKAPAPRALPRRSRSGSSSKGRGPSPEGSSSTE 1656
Query: 65 TQQFVPPTQSKKEKKDKVEKEKSEKETTSKKNSHKKTRPRLKNVDRSSAQHLEVTVGDLT 124
+ PP + + E K T + ++ P L R S +
Sbjct: 1657 SSPEHPPKSRTARRGSRSSPEPKTKSRTPPRRRSSRSSPELTRKARLSRR---------- 1706
Query: 125 VIITDFKEKTKSPPASSAASADQHSQSGSSSDNTERGMSRSSSPRGEASS 174
S P + + + +H +S S S SRSS R ASS
Sbjct: 1707 ------SRSASSSPETRSRTPPRHRRSPSVSSPEPAEKSRSSRRRRSASS 1750
Score = 27.3 bits (59), Expect = 7.3
Identities = 25/104 (24%), Positives = 41/104 (39%), Gaps = 5/104 (4%)
Query: 70 PPTQSKKEKKDKVEKEKSEKETTSKKNSHKKTRPRLKNVDRSSAQ-HLEVTVGDLTVIIT 128
P Q + + +S TS+K S +T P RS A T +I+
Sbjct: 1825 PARQESSRTSSRRRRGRSRTPPTSRKRSRSRTSPAPWKRSRSRASPATHRRSRSRTPLIS 1884
Query: 129 DFKEKTKSPPASSAASADQHS----QSGSSSDNTERGMSRSSSP 168
+ ++++ P S S + S +S S + R SRS +P
Sbjct: 1885 RRRSRSRTSPVSRRRSRSRTSVTRRRSRSRASPVSRRRSRSRTP 1928
>gi|42741684 zinc finger protein 265 isoform 1 [Homo sapiens]
Length = 330
Score = 41.6 bits (96), Expect = 4e-04
Identities = 37/173 (21%), Positives = 66/173 (38%), Gaps = 16/173 (9%)
Query: 23 WDCSVCTFRNSAEAFKCMMCDVRK----------GTSTRKPRPVSQLVAQQVTQQFVPPT 72
W C C+ N A +C MC+ K G + V + ++ ++
Sbjct: 69 WQCKTCSNVNWARRSECNMCNTPKYAKLEERTGYGGGFNERENVEYIEREESDGEYDEFG 128
Query: 73 QSKKEKKDK------VEKEKSEKETTSKKNSHKKTRPRLKNVDRSSAQHLEVTVGDLTVI 126
+ KK+ + K + KE +KE+ ++ + + K + +++ +L
Sbjct: 129 RKKKKYRGKAVGPASILKEVEDKESEGEEEDEDEDLSKYKLDEDEDEDDADLSKYNLDAS 188
Query: 127 ITDFKEKTKSPPASSAASADQHSQSGSSSDNTERGMSRSSSPRGEASSLNGES 179
+ K KS S + S HS+S S S + SRS S +SS S
Sbjct: 189 EEEDSNKKKSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRS 241
Score = 38.5 bits (88), Expect = 0.003
Identities = 34/138 (24%), Positives = 59/138 (42%), Gaps = 9/138 (6%)
Query: 43 DVRKGTSTRKPRPVSQLVAQQVTQQFVPPTQSKKEKKDKVEKEKSEKETTSKKNSHKKTR 102
D K S R+ R S+ + + + P+ S+ + + + S ++ S+ +S +++R
Sbjct: 192 DSNKKKSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSR-SRSSSSSQSRSRSSSRERSR 250
Query: 103 PRLKNVDRSSAQHLEVTVGDLTVIITDFKEKTKSPPASSAASADQHSQSGSSSDNTERGM 162
R SS H G + + + SP + S S+S SS D +R
Sbjct: 251 SRGSKSRSSSRSHR----GSSSPRKRSYSSSSSSPERNRKRS---RSRSSSSGDRKKR-R 302
Query: 163 SRSSSPRGEASSLNGESH 180
+RS SP S +G SH
Sbjct: 303 TRSRSPERRHRSSSGSSH 320
Score = 34.3 bits (77), Expect = 0.059
Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 23/104 (22%)
Query: 81 KVEKEKSEKETTSKKNSHKKTRPRLKNVDRSSAQHLEVTVGDLTVIITDFKEKTKSPPAS 140
K + SE+E ++KK S++++R + ++ S+ ++ SP +S
Sbjct: 182 KYNLDASEEEDSNKKKSNRRSRSKSRSSHSRSSS------------------RSSSPSSS 223
Query: 141 -----SAASADQHSQSGSSSDNTERGMSRSSSPRGEASSLNGES 179
S + + SQS S S + ER SR S R + S G S
Sbjct: 224 RSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSHRGSS 267
>gi|42741682 zinc finger protein 265 isoform 2 [Homo sapiens]
Length = 320
Score = 41.6 bits (96), Expect = 4e-04
Identities = 37/173 (21%), Positives = 66/173 (38%), Gaps = 16/173 (9%)
Query: 23 WDCSVCTFRNSAEAFKCMMCDVRK----------GTSTRKPRPVSQLVAQQVTQQFVPPT 72
W C C+ N A +C MC+ K G + V + ++ ++
Sbjct: 69 WQCKTCSNVNWARRSECNMCNTPKYAKLEERTGYGGGFNERENVEYIEREESDGEYDEFG 128
Query: 73 QSKKEKKDK------VEKEKSEKETTSKKNSHKKTRPRLKNVDRSSAQHLEVTVGDLTVI 126
+ KK+ + K + KE +KE+ ++ + + K + +++ +L
Sbjct: 129 RKKKKYRGKAVGPASILKEVEDKESEGEEEDEDEDLSKYKLDEDEDEDDADLSKYNLDAS 188
Query: 127 ITDFKEKTKSPPASSAASADQHSQSGSSSDNTERGMSRSSSPRGEASSLNGES 179
+ K KS S + S HS+S S S + SRS S +SS S
Sbjct: 189 EEEDSNKKKSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRS 241
Score = 34.3 bits (77), Expect = 0.059
Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 23/104 (22%)
Query: 81 KVEKEKSEKETTSKKNSHKKTRPRLKNVDRSSAQHLEVTVGDLTVIITDFKEKTKSPPAS 140
K + SE+E ++KK S++++R + ++ S+ ++ SP +S
Sbjct: 182 KYNLDASEEEDSNKKKSNRRSRSKSRSSHSRSSS------------------RSSSPSSS 223
Query: 141 -----SAASADQHSQSGSSSDNTERGMSRSSSPRGEASSLNGES 179
S + + SQS S S + ER SR S R + S G S
Sbjct: 224 RSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSHRGSS 267
Score = 30.8 bits (68), Expect = 0.66
Identities = 23/96 (23%), Positives = 45/96 (46%), Gaps = 9/96 (9%)
Query: 73 QSKKEKKDKVEKEKSEKETTSKKNSHKKTRPRLKNVDRSSAQHLEVTVGDLTVIITDFKE 132
+ K ++ + + S ++S+ +S +R R ++ RSS+ + + +E
Sbjct: 195 KKKSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSR-------SSSRE 247
Query: 133 KTKSPPASSAASADQHSQSGSSSDNTERGMSRSSSP 168
+++S + S +S+ H GSSS S SSSP
Sbjct: 248 RSRSRGSKSRSSSRSH--RGSSSPRKRSYSSSSSSP 281
>gi|4759100 splicing factor, arginine/serine-rich 11 [Homo sapiens]
Length = 484
Score = 40.8 bits (94), Expect = 6e-04
Identities = 31/137 (22%), Positives = 59/137 (43%), Gaps = 11/137 (8%)
Query: 45 RKGT-STRKPRPVSQLVAQQVTQQFVPPTQSKKEKKDKVEKEKSEKETTSKKNSHKKTRP 103
R GT S +KPR + +++ + P + KKEKK +KE+S E + KK++
Sbjct: 349 RSGTRSPKKPRSPKRKLSRSPS-----PRRHKKEKKKDKDKERSRDERERSTSKKKKSKD 403
Query: 104 RLKNVDRSSAQHLEVTVGDLTVIITDFKEKTKSPPASSAASADQHSQSGSSSDNTERGMS 163
+ K+ +R S D+ + D+ E+ + + ++ S E +
Sbjct: 404 KEKDRERKSESD-----KDVKQVTRDYDEEEQGYDSEKEKKEEKKPIETGSPKTKECSVE 458
Query: 164 RSSSPRGEASSLNGESH 180
+ + S +NG+ H
Sbjct: 459 KGTGDSLRESKVNGDDH 475
Score = 28.1 bits (61), Expect = 4.3
Identities = 21/99 (21%), Positives = 39/99 (39%), Gaps = 3/99 (3%)
Query: 71 PTQSKKEKKDKVEKEKSEKETTSKKNSHKKTRPRLKNVDRSSAQHLEVTVGDLTVIITDF 130
P+ S+ + + +S ++ S++ S R R + +R D +
Sbjct: 261 PSSSRHRRSRSRSRRRSHSKSRSRRRSKSPRRRRSHSRERGRRSRSTSKTRDKK---KED 317
Query: 131 KEKTKSPPASSAASADQHSQSGSSSDNTERGMSRSSSPR 169
KEK +S + S + S+S S R S + SP+
Sbjct: 318 KEKKRSKTPPKSYSTARRSRSASRERRRRRSRSGTRSPK 356
>gi|156104891 general transcription factor IIF, polypeptide 1, 74kDa
[Homo sapiens]
Length = 517
Score = 40.8 bits (94), Expect = 6e-04
Identities = 44/182 (24%), Positives = 71/182 (39%), Gaps = 32/182 (17%)
Query: 4 KKSPT----RPKRQPKPSSDEGYWDCSVCTFRNSAEAFKCMMCDVRKGTSTRKPRPVSQL 59
KK+P R K++ K S DE + D F + + G+S+ + P S+
Sbjct: 236 KKAPLAKGGRKKKKKKGSDDEAFEDSDDGDFEGQEVDY------MSDGSSSSQEEPESKA 289
Query: 60 VAQQ-------VTQQFVPPTQSKKEKKDKVEKEKSEKETTSKKNSHKKTRPRLKNVDRSS 112
A Q V +Q +S++EK + +KE+ E++ K+ + + D S
Sbjct: 290 KAPQQEEGPKGVDEQSDSSEESEEEKPPEEDKEEEEEKKAPTPQEKKRRKDSSEESDSSE 349
Query: 113 AQHLEVTVGDLTVIITDFKEKTKSPPASSAASADQHSQSGSSSDNTERGMSRSSSPRGEA 172
++ F K K+PP + SG SS RG SR +P E
Sbjct: 350 ESDIDSEASSAL-----FMAKKKTPPKR------ERKPSGGSS----RGNSRPGTPSAEG 394
Query: 173 SS 174
S
Sbjct: 395 GS 396
>gi|150418007 RAN binding protein 2 [Homo sapiens]
Length = 3224
Score = 40.0 bits (92), Expect = 0.001
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 20 EGYWDCSVCTFRNSAEAFKCMMCDV--RKGTSTRKPRPVSQLVAQ 62
EG WDCSVC RN A A KC+ C ++ +T P S +++
Sbjct: 1725 EGQWDCSVCLVRNEASATKCIACQCPSKQNQTTAISTPASSEISK 1769
Score = 40.0 bits (92), Expect = 0.001
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 20 EGYWDCSVCTFRNSAEAFKCMMCDVRKGT 48
+G WDCSVC +N + + KC+ CD K T
Sbjct: 1782 KGQWDCSVCCVQNESSSLKCVACDASKPT 1810
Score = 39.7 bits (91), Expect = 0.001
Identities = 15/23 (65%), Positives = 16/23 (69%)
Query: 20 EGYWDCSVCTFRNSAEAFKCMMC 42
EG WDCSVC RN A A KC+ C
Sbjct: 1607 EGQWDCSVCLVRNEASATKCIAC 1629
Score = 39.7 bits (91), Expect = 0.001
Identities = 15/23 (65%), Positives = 16/23 (69%)
Query: 20 EGYWDCSVCTFRNSAEAFKCMMC 42
EG WDCSVC RN A A KC+ C
Sbjct: 1666 EGQWDCSVCLVRNEASATKCIAC 1688
Score = 38.9 bits (89), Expect = 0.002
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 20 EGYWDCSVCTFRNSAEAFKCMMCD--VRKGTSTRKPRPVS 57
EG WDCS C RN A A +C+ C + ST P P S
Sbjct: 1544 EGQWDCSSCLVRNEANATRCVACQNPDKPSPSTSVPAPAS 1583
Score = 37.0 bits (84), Expect = 0.009
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 2 GDKKSPTRPKRQPKPSSDEGYWDCSVCTFRNSAEAFKCMMC-DVRKGT--STRKPRPVS 57
GD P + S+ EG WDCS C +N + KC C + RK + +T P P S
Sbjct: 1462 GDLPKPINSDFRSVFSTKEGQWDCSACLVQNEGSSTKCAACQNPRKQSLPATSIPTPAS 1520
Score = 36.6 bits (83), Expect = 0.012
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 9/49 (18%)
Query: 10 PKRQPKPSSD---------EGYWDCSVCTFRNSAEAFKCMMCDVRKGTS 49
PK P+ D EG+WDCS+C RN +C+ C K +
Sbjct: 1397 PKTSPENVQDRFALVTPKKEGHWDCSICLVRNEPTVSRCIACQNTKSAN 1445
Score = 30.0 bits (66), Expect = 1.1
Identities = 15/69 (21%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Query: 22 YWDCSVCTFRNSAEAFKCMMCDVRKGTSTRKPRPVSQLVAQQVTQQFVPPTQSKKEKKDK 81
+W C+ C+ +N++ A KC+ C ++ +LV + + P S + +D+
Sbjct: 1355 WWHCNSCSLKNASTAKKCVSCQNLNPSN-------KELVGPPLAETVFTPKTSPENVQDR 1407
Query: 82 VEKEKSEKE 90
+KE
Sbjct: 1408 FALVTPKKE 1416
>gi|62860046 zinc finger, RAN-binding domain containing 3 [Homo
sapiens]
Length = 1079
Score = 39.7 bits (91), Expect = 0.001
Identities = 19/92 (20%), Positives = 42/92 (45%)
Query: 23 WDCSVCTFRNSAEAFKCMMCDVRKGTSTRKPRPVSQLVAQQVTQQFVPPTQSKKEKKDKV 82
W CS+CT+ N++E C MC+ +G++ + ++ + + T K +
Sbjct: 625 WQCSLCTYINNSELPYCEMCETPQGSAVMQIDSLNHIQDKNEKDDSQKDTSKKVQTISDC 684
Query: 83 EKEKSEKETTSKKNSHKKTRPRLKNVDRSSAQ 114
EK+ + + K+ P+++ D ++Q
Sbjct: 685 EKQALAQSEPGQLADSKEETPKIEKEDGLTSQ 716
>gi|169166609 PREDICTED: similar to ribonucleic acid binding protein
S1 isoform 6 [Homo sapiens]
Length = 305
Score = 38.9 bits (89), Expect = 0.002
Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 3/98 (3%)
Query: 70 PPTQSKKEKKDKVEKEKSEKETTSKKNSHKKTRPRLKNVDRSSAQHLEVTVGDLTVIITD 129
P +K++ D+ K++S K+ + K S +K R R K R SA + + +
Sbjct: 26 PSPTKRKDRSDEKSKDRS-KDKGATKESSEKDRGRDKTRKRRSASSGSSSTRSRSSSTSS 84
Query: 130 FKEKTKSPPASSAASADQHSQSGSSSDNTERGMSRSSS 167
T + +S ++S+ S+SGSSS T R S SSS
Sbjct: 85 SGSSTSTGSSSGSSSSSASSRSGSSS--TSRSSSSSSS 120
>gi|113415994 PREDICTED: similar to ribonucleic acid binding protein
S1 isoform 2 [Homo sapiens]
Length = 305
Score = 38.9 bits (89), Expect = 0.002
Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 3/98 (3%)
Query: 70 PPTQSKKEKKDKVEKEKSEKETTSKKNSHKKTRPRLKNVDRSSAQHLEVTVGDLTVIITD 129
P +K++ D+ K++S K+ + K S +K R R K R SA + + +
Sbjct: 26 PSPTKRKDRSDEKSKDRS-KDKGATKESSEKDRGRDKTRKRRSASSGSSSTRSRSSSTSS 84
Query: 130 FKEKTKSPPASSAASADQHSQSGSSSDNTERGMSRSSS 167
T + +S ++S+ S+SGSSS T R S SSS
Sbjct: 85 SGSSTSTGSSSGSSSSSASSRSGSSS--TSRSSSSSSS 120
>gi|113415504 PREDICTED: similar to ribonucleic acid binding protein
S1 [Homo sapiens]
Length = 305
Score = 38.9 bits (89), Expect = 0.002
Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 3/98 (3%)
Query: 70 PPTQSKKEKKDKVEKEKSEKETTSKKNSHKKTRPRLKNVDRSSAQHLEVTVGDLTVIITD 129
P +K++ D+ K++S K+ + K S +K R R K R SA + + +
Sbjct: 26 PSPTKRKDRSDEKSKDRS-KDKGATKESSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSS 84
Query: 130 FKEKTKSPPASSAASADQHSQSGSSSDNTERGMSRSSS 167
T + +S ++S+ S+SGSSS T R S SSS
Sbjct: 85 SGSSTSTGSSSGSSSSSASSRSGSSS--TSRSSSSSSS 120
>gi|169166499 PREDICTED: similar to ribonucleic acid binding protein
S1 [Homo sapiens]
Length = 305
Score = 38.9 bits (89), Expect = 0.002
Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 3/98 (3%)
Query: 70 PPTQSKKEKKDKVEKEKSEKETTSKKNSHKKTRPRLKNVDRSSAQHLEVTVGDLTVIITD 129
P +K++ D+ K++S K+ + K S +K R R K R SA + + +
Sbjct: 26 PSPTKRKDRSDEKSKDRS-KDKGATKESSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSS 84
Query: 130 FKEKTKSPPASSAASADQHSQSGSSSDNTERGMSRSSS 167
T + +S ++S+ S+SGSSS T R S SSS
Sbjct: 85 SGSSTSTGSSSGSSSSSASSRSGSSS--TSRSSSSSSS 120
>gi|113415498 PREDICTED: similar to ribonucleic acid binding protein
S1 [Homo sapiens]
Length = 305
Score = 38.9 bits (89), Expect = 0.002
Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 3/98 (3%)
Query: 70 PPTQSKKEKKDKVEKEKSEKETTSKKNSHKKTRPRLKNVDRSSAQHLEVTVGDLTVIITD 129
P +K++ D+ K++S K+ + K S +K R R K R SA + + +
Sbjct: 26 PSPTKRKDRSDEKSKDRS-KDKGATKESSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSS 84
Query: 130 FKEKTKSPPASSAASADQHSQSGSSSDNTERGMSRSSS 167
T + +S ++S+ S+SGSSS T R S SSS
Sbjct: 85 SGSSTSTGSSSGSSSSSASSRSGSSS--TSRSSSSSSS 120
>gi|88973230 PREDICTED: similar to ribonucleic acid binding protein
S1 isoform 3 [Homo sapiens]
Length = 305
Score = 38.9 bits (89), Expect = 0.002
Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 3/98 (3%)
Query: 70 PPTQSKKEKKDKVEKEKSEKETTSKKNSHKKTRPRLKNVDRSSAQHLEVTVGDLTVIITD 129
P +K++ D+ K++S K+ + K S +K R R K R SA + + +
Sbjct: 26 PSPTKRKDRSDEKSKDRS-KDKGATKESSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSS 84
Query: 130 FKEKTKSPPASSAASADQHSQSGSSSDNTERGMSRSSS 167
T + +S ++S+ S+SGSSS T R S SSS
Sbjct: 85 SGSSTSTGSSSGSSSSSASSRSGSSS--TSRSSSSSSS 120
>gi|6857826 RNA-binding protein S1, serine-rich domain [Homo
sapiens]
Length = 305
Score = 38.9 bits (89), Expect = 0.002
Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 3/98 (3%)
Query: 70 PPTQSKKEKKDKVEKEKSEKETTSKKNSHKKTRPRLKNVDRSSAQHLEVTVGDLTVIITD 129
P +K++ D+ K++S K+ + K S +K R R K R SA + + +
Sbjct: 26 PSPTKRKDRSDEKSKDRS-KDKGATKESSEKDRGRDKTRKRRSASSGSSSTRSRSSSTSS 84
Query: 130 FKEKTKSPPASSAASADQHSQSGSSSDNTERGMSRSSS 167
T + +S ++S+ S+SGSSS T R S SSS
Sbjct: 85 SGSSTSTGSSSGSSSSSASSRSGSSS--TSRSSSSSSS 120
>gi|18379334 RNA-binding protein S1, serine-rich domain [Homo
sapiens]
Length = 305
Score = 38.9 bits (89), Expect = 0.002
Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 3/98 (3%)
Query: 70 PPTQSKKEKKDKVEKEKSEKETTSKKNSHKKTRPRLKNVDRSSAQHLEVTVGDLTVIITD 129
P +K++ D+ K++S K+ + K S +K R R K R SA + + +
Sbjct: 26 PSPTKRKDRSDEKSKDRS-KDKGATKESSEKDRGRDKTRKRRSASSGSSSTRSRSSSTSS 84
Query: 130 FKEKTKSPPASSAASADQHSQSGSSSDNTERGMSRSSS 167
T + +S ++S+ S+SGSSS T R S SSS
Sbjct: 85 SGSSTSTGSSSGSSSSSASSRSGSSS--TSRSSSSSSS 120
>gi|150456436 hypothetical protein LOC55719 isoform 1 [Homo sapiens]
Length = 1173
Score = 37.7 bits (86), Expect = 0.005
Identities = 34/123 (27%), Positives = 49/123 (39%), Gaps = 17/123 (13%)
Query: 50 TRKPRPVSQLVAQQVTQQFVPPTQSKKEKKDKVEKEKSEKETTSKKNSHKKTRPRLKNVD 109
+R P S LV +P ++ KE+ E E+T K KT NV
Sbjct: 477 SRVPSAGSSLVPLNAKNCALPVSKKDKERSSSKECSGHSTESTKHKEHKAKTNKADSNVS 536
Query: 110 RSSAQHLEVTVGDLTVIITDFKEKTKSPPA---------SSAASADQHSQSGSSSDNTER 160
+++ G L +++ TKSPPA S AA +D+ G SS N+
Sbjct: 537 SG-----KISGGPLR---SEYGTPTKSPPAALEVVPCIPSPAAPSDKAPSEGESSGNSNA 588
Query: 161 GMS 163
G S
Sbjct: 589 GSS 591
>gi|209915547 hypothetical protein LOC55719 isoform 2 [Homo sapiens]
Length = 1186
Score = 37.7 bits (86), Expect = 0.005
Identities = 34/123 (27%), Positives = 49/123 (39%), Gaps = 17/123 (13%)
Query: 50 TRKPRPVSQLVAQQVTQQFVPPTQSKKEKKDKVEKEKSEKETTSKKNSHKKTRPRLKNVD 109
+R P S LV +P ++ KE+ E E+T K KT NV
Sbjct: 477 SRVPSAGSSLVPLNAKNCALPVSKKDKERSSSKECSGHSTESTKHKEHKAKTNKADSNVS 536
Query: 110 RSSAQHLEVTVGDLTVIITDFKEKTKSPPA---------SSAASADQHSQSGSSSDNTER 160
+++ G L +++ TKSPPA S AA +D+ G SS N+
Sbjct: 537 SG-----KISGGPLR---SEYGTPTKSPPAALEVVPCIPSPAAPSDKAPSEGESSGNSNA 588
Query: 161 GMS 163
G S
Sbjct: 589 GSS 591
>gi|55749769 CWC22 spliceosome-associated protein homolog [Homo
sapiens]
Length = 908
Score = 37.4 bits (85), Expect = 0.007
Identities = 20/66 (30%), Positives = 34/66 (51%)
Query: 114 QHLEVTVGDLTVIITDFKEKTKSPPASSAASADQHSQSGSSSDNTERGMSRSSSPRGEAS 173
+HL+ T + D ++ SP +SS+AS+ S S S ++ S SSS ++S
Sbjct: 645 EHLKNTPKVIVAQKPDVEQNKSSPSSSSSASSSSESDSSDSDSDSSDSSSESSSEESDSS 704
Query: 174 SLNGES 179
S++ S
Sbjct: 705 SISSHS 710
>gi|60302875 shugoshin-like 1 isoform A1 [Homo sapiens]
Length = 527
Score = 37.0 bits (84), Expect = 0.009
Identities = 31/124 (25%), Positives = 59/124 (47%), Gaps = 13/124 (10%)
Query: 44 VRKGTSTRKPRPVSQLVAQQVTQQFVPPTQSKKEKKDKVEKEKSEKETTSKKN--SHKKT 101
++ GT T+ + + ++Q + + K+E+K K + KS++ + K+N +KKT
Sbjct: 260 IQPGTFTKTKEDILESKSEQTKSKQRDTQERKREEKRKANRRKSKRMSKYKENKSENKKT 319
Query: 102 RPRL---KNVDRSSAQHLEVTVGDLTVIITDFKEK-----TKSPPASSAASADQHSQSGS 153
P+ K+V + A + + G V +T F++K + S S + S SG
Sbjct: 320 VPQKKMHKSVSSNDAYNFNLEEG---VHLTPFRQKVSNDSNREENNESEVSLCESSGSGD 376
Query: 154 SSDN 157
SD+
Sbjct: 377 DSDD 380
>gi|60302870 shugoshin-like 1 isoform A2 [Homo sapiens]
Length = 561
Score = 37.0 bits (84), Expect = 0.009
Identities = 31/124 (25%), Positives = 59/124 (47%), Gaps = 13/124 (10%)
Query: 44 VRKGTSTRKPRPVSQLVAQQVTQQFVPPTQSKKEKKDKVEKEKSEKETTSKKN--SHKKT 101
++ GT T+ + + ++Q + + K+E+K K + KS++ + K+N +KKT
Sbjct: 260 IQPGTFTKTKEDILESKSEQTKSKQRDTQERKREEKRKANRRKSKRMSKYKENKSENKKT 319
Query: 102 RPRL---KNVDRSSAQHLEVTVGDLTVIITDFKEK-----TKSPPASSAASADQHSQSGS 153
P+ K+V + A + + G V +T F++K + S S + S SG
Sbjct: 320 VPQKKMHKSVSSNDAYNFNLEEG---VHLTPFRQKVSNDSNREENNESEVSLCESSGSGD 376
Query: 154 SSDN 157
SD+
Sbjct: 377 DSDD 380
>gi|8923106 zinc finger, CCHC domain containing 10 [Homo sapiens]
Length = 170
Score = 37.0 bits (84), Expect = 0.009
Identities = 28/99 (28%), Positives = 50/99 (50%), Gaps = 7/99 (7%)
Query: 76 KEKKDKVEKEKSEKETTSKKNSHKKTRPRLKNVDRSSAQHLEVTVGDLTVIITDFKEKTK 135
KEK++++ ++S ET ++ + KK R K+V SS+ + + D + E+T
Sbjct: 57 KEKENRLLLQQSIGETNVERKAKKK---RSKSVTSSSSSSSDSSASDSS----SESEETS 109
Query: 136 SPPASSAASADQHSQSGSSSDNTERGMSRSSSPRGEASS 174
+ +S + D+ S S SSS ++ S S S +SS
Sbjct: 110 TSSSSEDSDTDESSSSSSSSASSTTSSSSSDSDSDSSSS 148
Score = 33.9 bits (76), Expect = 0.077
Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 4/93 (4%)
Query: 91 TTSKKNSHKKTRP-RLKNV--DRSSAQHLEVTVGDLTVIITDFKEKTKSPPASSAASADQ 147
T +K H+ +R LK ++ + L+ ++G+ V K+++KS +SS++S+D
Sbjct: 37 TGKRKYLHRPSRTAELKKALKEKENRLLLQQSIGETNVERKAKKKRSKSVTSSSSSSSDS 96
Query: 148 H-SQSGSSSDNTERGMSRSSSPRGEASSLNGES 179
S S S S+ T S S E+SS + S
Sbjct: 97 SASDSSSESEETSTSSSSEDSDTDESSSSSSSS 129
>gi|24430146 nucleoporin 153kDa [Homo sapiens]
Length = 1475
Score = 36.6 bits (83), Expect = 0.012
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 20 EGYWDCSVCTFRNSAEAFKCMMCDVRK 46
EG WDC +C +N A++ KC+ C+ K
Sbjct: 852 EGSWDCELCLVQNKADSTKCLACESAK 878
Score = 36.2 bits (82), Expect = 0.016
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 21 GYWDCSVCTFRNSAEAFKCMMCDVRK-GTSTRK 52
G WDC C +N EA KC+ C+ K GT ++
Sbjct: 724 GTWDCDTCLVQNKPEAIKCVACETPKPGTCVKR 756
Score = 33.5 bits (75), Expect = 0.10
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 21 GYWDCSVCTFRNSAEAFKCMMCDVRKGTST 50
G W+CSVC N+AE KC+ C K S+
Sbjct: 795 GSWECSVCCVSNNAEDNKCVSCMSEKPGSS 824
>gi|110815809 zinc finger, RAN-binding domain containing 1 protein
[Homo sapiens]
Length = 708
Score = 36.6 bits (83), Expect = 0.012
Identities = 12/22 (54%), Positives = 18/22 (81%)
Query: 22 YWDCSVCTFRNSAEAFKCMMCD 43
+W CSVCT+ N A+A +C++CD
Sbjct: 152 HWTCSVCTYENWAKAKRCVVCD 173
Score = 32.3 bits (72), Expect = 0.23
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 23 WDCSVCTFRNSAEAFKCMMCDVRKGTST 50
W C CT+ N A KC MC ++ + T
Sbjct: 8 WACEYCTYENWPSAIKCTMCRAQRPSGT 35
Score = 30.0 bits (66), Expect = 1.1
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 6 SPTRPKRQPKPSSDEGY-WDCSVCTFRNSAEAFKCMMCDVRKGTSTRKPRPVS 57
S RP+ + S + W C +CT+ N A +C C ++ T + P S
Sbjct: 70 SSARPRVKSSYSMENANKWSCHMCTYLNWPRAIRCTQCLSQRRTRSPTESPQS 122
>gi|17978469 cyclin T2 isoform b [Homo sapiens]
Length = 730
Score = 36.6 bits (83), Expect = 0.012
Identities = 38/137 (27%), Positives = 57/137 (41%), Gaps = 44/137 (32%)
Query: 69 VPPTQ---SKKEKKDKVEKEKSEKETTSKKNSHKKTRPRLKNVDRSSAQHLEVTVGDLTV 125
+PPT SK+E K K++ SE+ ++S + S K + S+ H
Sbjct: 511 IPPTDKSASKEELKMKIKVSSSERHSSSDEGSGK---------SKHSSPH---------- 551
Query: 126 IITDFKEKTKSPPAS---SAASADQHSQSGSSSDNTER-------------------GMS 163
I D KEK K P+S +++ HS SGSSS ++ G+S
Sbjct: 552 ISRDHKEKHKEHPSSRHHTSSHKHSHSHSGSSSGGSKHSADGIPPTVLRSPVGLSSDGIS 611
Query: 164 RSSSPRGEASSLNGESH 180
SSS + +N SH
Sbjct: 612 SSSSSSRKRLHVNDASH 628
>gi|4502629 cyclin T2 isoform a [Homo sapiens]
Length = 663
Score = 36.6 bits (83), Expect = 0.012
Identities = 38/137 (27%), Positives = 57/137 (41%), Gaps = 44/137 (32%)
Query: 69 VPPTQ---SKKEKKDKVEKEKSEKETTSKKNSHKKTRPRLKNVDRSSAQHLEVTVGDLTV 125
+PPT SK+E K K++ SE+ ++S + S K + S+ H
Sbjct: 511 IPPTDKSASKEELKMKIKVSSSERHSSSDEGSGK---------SKHSSPH---------- 551
Query: 126 IITDFKEKTKSPPAS---SAASADQHSQSGSSSDNTER-------------------GMS 163
I D KEK K P+S +++ HS SGSSS ++ G+S
Sbjct: 552 ISRDHKEKHKEHPSSRHHTSSHKHSHSHSGSSSGGSKHSADGIPPTVLRSPVGLSSDGIS 611
Query: 164 RSSSPRGEASSLNGESH 180
SSS + +N SH
Sbjct: 612 SSSSSSRKRLHVNDASH 628
>gi|14149716 protein phosphatase 1, regulatory subunit 12C [Homo
sapiens]
Length = 782
Score = 36.6 bits (83), Expect = 0.012
Identities = 40/152 (26%), Positives = 56/152 (36%), Gaps = 29/152 (19%)
Query: 34 AEAFKCMMCDVRKGTSTRKPRPVSQLVAQQVTQQFVPPTQSKKEKKD---KVEKEKSEKE 90
+E K C +R P P S T PP S+ ++ V E+SE
Sbjct: 486 SEVTKPPPCLENSSPPSRIPEPESPAKPNVPTASTAPPADSRDRRRSYQMPVRDEESE-- 543
Query: 91 TTSKKNSHKKTRPRLKNVDRSSAQHLEVTVGDLTVIITDFKEKTKSPPASSAASADQHSQ 150
S +K R RL R S Q V +TD KE K +A A + +
Sbjct: 544 ------SQRKARSRLMRQSRRSTQ---------GVTLTDLKEAEK-----AAGKAPESEK 583
Query: 151 SGSSSDNTER----GMSRSSSPRGEASSLNGE 178
S D + R G+ S SP A + +G+
Sbjct: 584 PAQSLDPSRRPRVPGVENSDSPAQRAEAPDGQ 615
>gi|239750213 PREDICTED: hypothetical protein [Homo sapiens]
Length = 248
Score = 35.8 bits (81), Expect = 0.020
Identities = 32/127 (25%), Positives = 53/127 (41%), Gaps = 12/127 (9%)
Query: 45 RKGTSTRKPRPVSQLVAQQVTQQFVPPTQSKKEKKDKVEKEKSEKETTSKKNSHKKTRPR 104
+K T+T+K T++ T +KEK+ + EKEK EKE +K KK + +
Sbjct: 45 KKKTTTKKKTTTKTKKRTTTTKKTTTTTTKEKEKEKEKEKEK-EKEKEKEKEKEKKKKKK 103
Query: 105 LKNVDRSSAQHLEVTVGDLTVIITDFKEKTKSPPASSAASADQHSQSGSSSDNTERGMSR 164
K + + +V + I + E T A+A + + GS +S
Sbjct: 104 KKKKKKKKKLNAKV----CGLEIASWSEMT-------TAAAGEGEEQGSMVQAAGVSISN 152
Query: 165 SSSPRGE 171
SS R +
Sbjct: 153 SSPSRSD 159
Score = 30.0 bits (66), Expect = 1.1
Identities = 25/128 (19%), Positives = 56/128 (43%), Gaps = 1/128 (0%)
Query: 38 KCMMCDVRKGTSTRKPRPVSQLVAQQVTQQFVPPTQSKKEKKDK-VEKEKSEKETTSKKN 96
K M +K T+ +K ++ + T+ K+++K+K EKEK +++ K+
Sbjct: 39 KTTMKKKKKTTTKKKTTTKTKKRTTTTKKTTTTTTKEKEKEKEKEKEKEKEKEKEKEKEK 98
Query: 97 SHKKTRPRLKNVDRSSAQHLEVTVGDLTVIITDFKEKTKSPPASSAASADQHSQSGSSSD 156
KK + + K + +A+ + + + + T + + + A+ S S S
Sbjct: 99 KKKKKKKKKKKKKKLNAKVCGLEIASWSEMTTAAAGEGEEQGSMVQAAGVSISNSSPSRS 158
Query: 157 NTERGMSR 164
+ + G +R
Sbjct: 159 DGKEGWTR 166
Score = 29.6 bits (65), Expect = 1.5
Identities = 18/72 (25%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 41 MCDVRKGTSTRKPRPVSQLVAQQVTQQFVPPTQSKKEKKDKVEKEKSEKETTSKKNSHKK 100
M ++ KG + K +++ + + T+ KK+KK ++K+K +TT+KK + K
Sbjct: 1 MQELDKGVAMEKVHVITEKESAWKRGRKKKTTKKKKKKKTTMKKKK---KTTTKKKTTTK 57
Query: 101 TRPRLKNVDRSS 112
T+ R +++
Sbjct: 58 TKKRTTTTKKTT 69
>gi|38788260 bromodomain PHD finger transcription factor isoform 2
[Homo sapiens]
Length = 2903
Score = 35.8 bits (81), Expect = 0.020
Identities = 36/151 (23%), Positives = 60/151 (39%), Gaps = 8/151 (5%)
Query: 19 DEGYWDCSVCTFRNSAEAFKCMMCDVRKGTSTRKPRPVSQLVAQQVTQQFVPPTQSKKEK 78
D+ YW+ +C D+ + T K R ++ ++ + +S + K
Sbjct: 508 DKDYWEAELCKILEEMREEIHRHMDITEDL-TNKARGSNKSFLAAANEEIL---ESIRAK 563
Query: 79 KDKVEKEKSEKETTSKKN-SHKKTRPRLKNVDRSSAQHLEVTVGDLTVIITDFKEKTKSP 137
K ++ KS +ET KN + ++ KN + Q LE D T D E+ KS
Sbjct: 564 KGDIDNVKSPEETEKDKNETENDSKDAEKNREEFEDQSLEKDSDDKTP--DDDPEQGKSE 621
Query: 138 PASSAASADQHSQSGSSSDNTERGMSRSSSP 168
+ +S S + DNT S +SP
Sbjct: 622 EPTEVGDKG-NSVSANLGDNTTNATSEETSP 651
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.304 0.118 0.327
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,512,949
Number of Sequences: 37866
Number of extensions: 333026
Number of successful extensions: 4244
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 233
Number of HSP's that attempted gapping in prelim test: 2763
Number of HSP's gapped (non-prelim): 1233
length of query: 180
length of database: 18,247,518
effective HSP length: 96
effective length of query: 84
effective length of database: 14,612,382
effective search space: 1227440088
effective search space used: 1227440088
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.