Search of human proteins with 5902016

Search of human proteins with 5902016

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|5902016 reticulon 4 isoform C [Homo sapiens]
         (199 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|5902016 reticulon 4 isoform C [Homo sapiens]                       386   e-108
gi|47519562 reticulon 4 isoform E [Homo sapiens]                      363   e-101
gi|24431935 reticulon 4 isoform A [Homo sapiens]                      363   e-101
gi|24431933 reticulon 4 isoform B [Homo sapiens]                      361   e-100
gi|47519490 reticulon 4 isoform D [Homo sapiens]                      361   e-100
gi|45827776 reticulon 1 isoform C [Homo sapiens]                      277   5e-75
gi|45827778 reticulon 1 isoform B [Homo sapiens]                      271   3e-73
gi|10863935 reticulon 1 isoform A [Homo sapiens]                      271   3e-73
gi|41393604 reticulon 3 isoform c [Homo sapiens]                      244   3e-65
gi|41393608 reticulon 3 isoform b [Homo sapiens]                      244   5e-65
gi|5174655 reticulon 3 isoform a [Homo sapiens]                       244   5e-65
gi|41393606 reticulon 3 isoform d [Homo sapiens]                      207   5e-54
gi|5032055 reticulon 2 isoform A [Homo sapiens]                       188   2e-48
gi|46255007 reticulon 2 isoform C [Homo sapiens]                      188   2e-48
gi|46255005 reticulon 2 isoform B [Homo sapiens]                      186   9e-48
gi|167000400 gamma-aminobutyric acid (GABA) B receptor 1 isoform...    30   1.8  
gi|11497612 gamma-aminobutyric acid (GABA) B receptor 1 isoform ...    30   1.8  
gi|10835015 gamma-aminobutyric acid (GABA) B receptor 1 isoform ...    30   1.8  
gi|61742777 leucyl/cystinyl aminopeptidase isoform 1 [Homo sapiens]    29   2.3  
gi|61742775 leucyl/cystinyl aminopeptidase isoform 2 [Homo sapiens]    29   2.3  
gi|45827800 prestin isoform b [Homo sapiens]                           29   3.0  
gi|39752683 prestin isoform a [Homo sapiens]                           29   3.0  
gi|75677363 lectin, mannose-binding, 1 like [Homo sapiens]             28   3.9  
gi|62945417 dystrophia myotonica-containing WD repeat motif prot...    27   8.8  
gi|157388955 schlafen family member 12 [Homo sapiens]                  27   8.8  

>gi|5902016 reticulon 4 isoform C [Homo sapiens]
          Length = 199

 Score =  386 bits (992), Expect = e-108
 Identities = 199/199 (100%), Positives = 199/199 (100%)

Query: 1   MDGQKKNWKDKVVDLLYWRDIKKTGVVFGASLFLLLSLTVFSIVSVTAYIALALLSVTIS 60
           MDGQKKNWKDKVVDLLYWRDIKKTGVVFGASLFLLLSLTVFSIVSVTAYIALALLSVTIS
Sbjct: 1   MDGQKKNWKDKVVDLLYWRDIKKTGVVFGASLFLLLSLTVFSIVSVTAYIALALLSVTIS 60

Query: 61  FRIYKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKELRRLFLVD 120
           FRIYKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKELRRLFLVD
Sbjct: 61  FRIYKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKELRRLFLVD 120

Query: 121 DLVDSLKFAVLMWVFTYVGALFNGLTLLILALISLFSVPVIYERHQAQIDHYLGLANKNV 180
           DLVDSLKFAVLMWVFTYVGALFNGLTLLILALISLFSVPVIYERHQAQIDHYLGLANKNV
Sbjct: 121 DLVDSLKFAVLMWVFTYVGALFNGLTLLILALISLFSVPVIYERHQAQIDHYLGLANKNV 180

Query: 181 KDAMAKIQAKIPGLKRKAE 199
           KDAMAKIQAKIPGLKRKAE
Sbjct: 181 KDAMAKIQAKIPGLKRKAE 199


>gi|47519562 reticulon 4 isoform E [Homo sapiens]
          Length = 986

 Score =  363 bits (931), Expect = e-101
 Identities = 189/191 (98%), Positives = 189/191 (98%)

Query: 9   KDKVVDLLYWRDIKKTGVVFGASLFLLLSLTVFSIVSVTAYIALALLSVTISFRIYKGVI 68
           K  VVDLLYWRDIKKTGVVFGASLFLLLSLTVFSIVSVTAYIALALLSVTISFRIYKGVI
Sbjct: 796 KTSVVDLLYWRDIKKTGVVFGASLFLLLSLTVFSIVSVTAYIALALLSVTISFRIYKGVI 855

Query: 69  QAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKELRRLFLVDDLVDSLKF 128
           QAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKELRRLFLVDDLVDSLKF
Sbjct: 856 QAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKELRRLFLVDDLVDSLKF 915

Query: 129 AVLMWVFTYVGALFNGLTLLILALISLFSVPVIYERHQAQIDHYLGLANKNVKDAMAKIQ 188
           AVLMWVFTYVGALFNGLTLLILALISLFSVPVIYERHQAQIDHYLGLANKNVKDAMAKIQ
Sbjct: 916 AVLMWVFTYVGALFNGLTLLILALISLFSVPVIYERHQAQIDHYLGLANKNVKDAMAKIQ 975

Query: 189 AKIPGLKRKAE 199
           AKIPGLKRKAE
Sbjct: 976 AKIPGLKRKAE 986


>gi|24431935 reticulon 4 isoform A [Homo sapiens]
          Length = 1192

 Score =  363 bits (931), Expect = e-101
 Identities = 189/191 (98%), Positives = 189/191 (98%)

Query: 9    KDKVVDLLYWRDIKKTGVVFGASLFLLLSLTVFSIVSVTAYIALALLSVTISFRIYKGVI 68
            K  VVDLLYWRDIKKTGVVFGASLFLLLSLTVFSIVSVTAYIALALLSVTISFRIYKGVI
Sbjct: 1002 KTSVVDLLYWRDIKKTGVVFGASLFLLLSLTVFSIVSVTAYIALALLSVTISFRIYKGVI 1061

Query: 69   QAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKELRRLFLVDDLVDSLKF 128
            QAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKELRRLFLVDDLVDSLKF
Sbjct: 1062 QAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKELRRLFLVDDLVDSLKF 1121

Query: 129  AVLMWVFTYVGALFNGLTLLILALISLFSVPVIYERHQAQIDHYLGLANKNVKDAMAKIQ 188
            AVLMWVFTYVGALFNGLTLLILALISLFSVPVIYERHQAQIDHYLGLANKNVKDAMAKIQ
Sbjct: 1122 AVLMWVFTYVGALFNGLTLLILALISLFSVPVIYERHQAQIDHYLGLANKNVKDAMAKIQ 1181

Query: 189  AKIPGLKRKAE 199
            AKIPGLKRKAE
Sbjct: 1182 AKIPGLKRKAE 1192


>gi|24431933 reticulon 4 isoform B [Homo sapiens]
          Length = 373

 Score =  361 bits (927), Expect = e-100
 Identities = 188/188 (100%), Positives = 188/188 (100%)

Query: 12  VVDLLYWRDIKKTGVVFGASLFLLLSLTVFSIVSVTAYIALALLSVTISFRIYKGVIQAI 71
           VVDLLYWRDIKKTGVVFGASLFLLLSLTVFSIVSVTAYIALALLSVTISFRIYKGVIQAI
Sbjct: 186 VVDLLYWRDIKKTGVVFGASLFLLLSLTVFSIVSVTAYIALALLSVTISFRIYKGVIQAI 245

Query: 72  QKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKELRRLFLVDDLVDSLKFAVL 131
           QKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKELRRLFLVDDLVDSLKFAVL
Sbjct: 246 QKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKELRRLFLVDDLVDSLKFAVL 305

Query: 132 MWVFTYVGALFNGLTLLILALISLFSVPVIYERHQAQIDHYLGLANKNVKDAMAKIQAKI 191
           MWVFTYVGALFNGLTLLILALISLFSVPVIYERHQAQIDHYLGLANKNVKDAMAKIQAKI
Sbjct: 306 MWVFTYVGALFNGLTLLILALISLFSVPVIYERHQAQIDHYLGLANKNVKDAMAKIQAKI 365

Query: 192 PGLKRKAE 199
           PGLKRKAE
Sbjct: 366 PGLKRKAE 373


>gi|47519490 reticulon 4 isoform D [Homo sapiens]
          Length = 392

 Score =  361 bits (927), Expect = e-100
 Identities = 188/188 (100%), Positives = 188/188 (100%)

Query: 12  VVDLLYWRDIKKTGVVFGASLFLLLSLTVFSIVSVTAYIALALLSVTISFRIYKGVIQAI 71
           VVDLLYWRDIKKTGVVFGASLFLLLSLTVFSIVSVTAYIALALLSVTISFRIYKGVIQAI
Sbjct: 205 VVDLLYWRDIKKTGVVFGASLFLLLSLTVFSIVSVTAYIALALLSVTISFRIYKGVIQAI 264

Query: 72  QKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKELRRLFLVDDLVDSLKFAVL 131
           QKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKELRRLFLVDDLVDSLKFAVL
Sbjct: 265 QKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKELRRLFLVDDLVDSLKFAVL 324

Query: 132 MWVFTYVGALFNGLTLLILALISLFSVPVIYERHQAQIDHYLGLANKNVKDAMAKIQAKI 191
           MWVFTYVGALFNGLTLLILALISLFSVPVIYERHQAQIDHYLGLANKNVKDAMAKIQAKI
Sbjct: 325 MWVFTYVGALFNGLTLLILALISLFSVPVIYERHQAQIDHYLGLANKNVKDAMAKIQAKI 384

Query: 192 PGLKRKAE 199
           PGLKRKAE
Sbjct: 385 PGLKRKAE 392


>gi|45827776 reticulon 1 isoform C [Homo sapiens]
          Length = 208

 Score =  277 bits (708), Expect = 5e-75
 Identities = 133/199 (66%), Positives = 165/199 (82%)

Query: 1   MDGQKKNWKDKVVDLLYWRDIKKTGVVFGASLFLLLSLTVFSIVSVTAYIALALLSVTIS 60
           MD    NWK + +DLLYWRDIK+TG+VFG+ L LL SLT FS+VSV AY+ALA LS TIS
Sbjct: 10  MDCVWSNWKSQAIDLLYWRDIKQTGIVFGSFLLLLFSLTQFSVVSVVAYLALAALSATIS 69

Query: 61  FRIYKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKELRRLFLVD 120
           FRIYK V+QA+QK+DEGHPF+AYLE E+ +S+E +QKY++    +VN T+KELRRLFLV 
Sbjct: 70  FRIYKSVLQAVQKTDEGHPFKAYLELEITLSQEQIQKYTDCLQFYVNSTLKELRRLFLVQ 129

Query: 121 DLVDSLKFAVLMWVFTYVGALFNGLTLLILALISLFSVPVIYERHQAQIDHYLGLANKNV 180
           DLVDSLKFAVLMW+ TYVGALFNGLTLL++A++S+F++PV+Y +HQAQID YLGL   ++
Sbjct: 130 DLVDSLKFAVLMWLLTYVGALFNGLTLLLMAVVSMFTLPVVYVKHQAQIDQYLGLVRTHI 189

Query: 181 KDAMAKIQAKIPGLKRKAE 199
              +AKIQAKIPG KR AE
Sbjct: 190 NAVVAKIQAKIPGAKRHAE 208


>gi|45827778 reticulon 1 isoform B [Homo sapiens]
          Length = 356

 Score =  271 bits (692), Expect = 3e-73
 Identities = 130/191 (68%), Positives = 161/191 (84%)

Query: 9   KDKVVDLLYWRDIKKTGVVFGASLFLLLSLTVFSIVSVTAYIALALLSVTISFRIYKGVI 68
           K K +DLLYWRDIK+TG+VFG+ L LL SLT FS+VSV AY+ALA LS TISFRIYK V+
Sbjct: 166 KQKAIDLLYWRDIKQTGIVFGSFLLLLFSLTQFSVVSVVAYLALAALSATISFRIYKSVL 225

Query: 69  QAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKELRRLFLVDDLVDSLKF 128
           QA+QK+DEGHPF+AYLE E+ +S+E +QKY++    +VN T+KELRRLFLV DLVDSLKF
Sbjct: 226 QAVQKTDEGHPFKAYLELEITLSQEQIQKYTDCLQFYVNSTLKELRRLFLVQDLVDSLKF 285

Query: 129 AVLMWVFTYVGALFNGLTLLILALISLFSVPVIYERHQAQIDHYLGLANKNVKDAMAKIQ 188
           AVLMW+ TYVGALFNGLTLL++A++S+F++PV+Y +HQAQID YLGL   ++   +AKIQ
Sbjct: 286 AVLMWLLTYVGALFNGLTLLLMAVVSMFTLPVVYVKHQAQIDQYLGLVRTHINAVVAKIQ 345

Query: 189 AKIPGLKRKAE 199
           AKIPG KR AE
Sbjct: 346 AKIPGAKRHAE 356


>gi|10863935 reticulon 1 isoform A [Homo sapiens]
          Length = 776

 Score =  271 bits (692), Expect = 3e-73
 Identities = 130/191 (68%), Positives = 161/191 (84%)

Query: 9   KDKVVDLLYWRDIKKTGVVFGASLFLLLSLTVFSIVSVTAYIALALLSVTISFRIYKGVI 68
           K K +DLLYWRDIK+TG+VFG+ L LL SLT FS+VSV AY+ALA LS TISFRIYK V+
Sbjct: 586 KQKAIDLLYWRDIKQTGIVFGSFLLLLFSLTQFSVVSVVAYLALAALSATISFRIYKSVL 645

Query: 69  QAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKELRRLFLVDDLVDSLKF 128
           QA+QK+DEGHPF+AYLE E+ +S+E +QKY++    +VN T+KELRRLFLV DLVDSLKF
Sbjct: 646 QAVQKTDEGHPFKAYLELEITLSQEQIQKYTDCLQFYVNSTLKELRRLFLVQDLVDSLKF 705

Query: 129 AVLMWVFTYVGALFNGLTLLILALISLFSVPVIYERHQAQIDHYLGLANKNVKDAMAKIQ 188
           AVLMW+ TYVGALFNGLTLL++A++S+F++PV+Y +HQAQID YLGL   ++   +AKIQ
Sbjct: 706 AVLMWLLTYVGALFNGLTLLLMAVVSMFTLPVVYVKHQAQIDQYLGLVRTHINAVVAKIQ 765

Query: 189 AKIPGLKRKAE 199
           AKIPG KR AE
Sbjct: 766 AKIPGAKRHAE 776


>gi|41393604 reticulon 3 isoform c [Homo sapiens]
          Length = 255

 Score =  244 bits (623), Expect = 3e-65
 Identities = 115/190 (60%), Positives = 154/190 (81%), Gaps = 1/190 (0%)

Query: 11  KVVDLLYWRDIKKTGVVFGASLFLLLSLTVFSIVSVTAYIALALLSVTISFRIYKGVIQA 70
           +V DL++WRD+KKTG VFG +L +LLSL  FS++SV +Y+ LALLSVTISFRIYK VIQA
Sbjct: 66  QVHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRIYKSVIQA 125

Query: 71  IQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKELRRLFLVDDLVDSLKFAV 130
           +QKS+EGHPF+AYL+ ++ +S E    Y N+A+ H+N  +K + RLFLV+DLVDSLK AV
Sbjct: 126 VQKSEEGHPFKAYLDVDITLSSEAFHNYMNAAMVHINRALKLIIRLFLVEDLVDSLKLAV 185

Query: 131 LMWVFTYVGALFNGLTLLILALISLFSVPVIYERHQAQIDHYLGLANKNVKDAMAKIQAK 190
            MW+ TYVGA+FNG+TLLILA + +FSVP++YE+++ QIDHY+G+A    K  + KIQAK
Sbjct: 186 FMWLMTYVGAVFNGITLLILAELLIFSVPIVYEKYKTQIDHYVGIARDQTKSIVEKIQAK 245

Query: 191 IPGL-KRKAE 199
           +PG+ K+KAE
Sbjct: 246 LPGIAKKKAE 255


>gi|41393608 reticulon 3 isoform b [Homo sapiens]
          Length = 1013

 Score =  244 bits (622), Expect = 5e-65
 Identities = 115/189 (60%), Positives = 153/189 (80%), Gaps = 1/189 (0%)

Query: 12   VVDLLYWRDIKKTGVVFGASLFLLLSLTVFSIVSVTAYIALALLSVTISFRIYKGVIQAI 71
            V DL++WRD+KKTG VFG +L +LLSL  FS++SV +Y+ LALLSVTISFRIYK VIQA+
Sbjct: 825  VHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRIYKSVIQAV 884

Query: 72   QKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKELRRLFLVDDLVDSLKFAVL 131
            QKS+EGHPF+AYL+ ++ +S E    Y N+A+ H+N  +K + RLFLV+DLVDSLK AV 
Sbjct: 885  QKSEEGHPFKAYLDVDITLSSEAFHNYMNAAMVHINRALKLIIRLFLVEDLVDSLKLAVF 944

Query: 132  MWVFTYVGALFNGLTLLILALISLFSVPVIYERHQAQIDHYLGLANKNVKDAMAKIQAKI 191
            MW+ TYVGA+FNG+TLLILA + +FSVP++YE+++ QIDHY+G+A    K  + KIQAK+
Sbjct: 945  MWLMTYVGAVFNGITLLILAELLIFSVPIVYEKYKTQIDHYVGIARDQTKSIVEKIQAKL 1004

Query: 192  PGL-KRKAE 199
            PG+ K+KAE
Sbjct: 1005 PGIAKKKAE 1013


>gi|5174655 reticulon 3 isoform a [Homo sapiens]
          Length = 236

 Score =  244 bits (622), Expect = 5e-65
 Identities = 115/189 (60%), Positives = 153/189 (80%), Gaps = 1/189 (0%)

Query: 12  VVDLLYWRDIKKTGVVFGASLFLLLSLTVFSIVSVTAYIALALLSVTISFRIYKGVIQAI 71
           V DL++WRD+KKTG VFG +L +LLSL  FS++SV +Y+ LALLSVTISFRIYK VIQA+
Sbjct: 48  VHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRIYKSVIQAV 107

Query: 72  QKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKELRRLFLVDDLVDSLKFAVL 131
           QKS+EGHPF+AYL+ ++ +S E    Y N+A+ H+N  +K + RLFLV+DLVDSLK AV 
Sbjct: 108 QKSEEGHPFKAYLDVDITLSSEAFHNYMNAAMVHINRALKLIIRLFLVEDLVDSLKLAVF 167

Query: 132 MWVFTYVGALFNGLTLLILALISLFSVPVIYERHQAQIDHYLGLANKNVKDAMAKIQAKI 191
           MW+ TYVGA+FNG+TLLILA + +FSVP++YE+++ QIDHY+G+A    K  + KIQAK+
Sbjct: 168 MWLMTYVGAVFNGITLLILAELLIFSVPIVYEKYKTQIDHYVGIARDQTKSIVEKIQAKL 227

Query: 192 PGL-KRKAE 199
           PG+ K+KAE
Sbjct: 228 PGIAKKKAE 236


>gi|41393606 reticulon 3 isoform d [Homo sapiens]
          Length = 241

 Score =  207 bits (527), Expect = 5e-54
 Identities = 96/155 (61%), Positives = 128/155 (82%)

Query: 12  VVDLLYWRDIKKTGVVFGASLFLLLSLTVFSIVSVTAYIALALLSVTISFRIYKGVIQAI 71
           V DL++WRD+KKTG VFG +L +LLSL  FS++SV +Y+ LALLSVTISFRIYK VIQA+
Sbjct: 48  VHDLIFWRDVKKTGFVFGTTLIMLLSLAAFSVISVVSYLILALLSVTISFRIYKSVIQAV 107

Query: 72  QKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKELRRLFLVDDLVDSLKFAVL 131
           QKS+EGHPF+AYL+ ++ +S E    Y N+A+ H+N  +K + RLFLV+DLVDSLK AV 
Sbjct: 108 QKSEEGHPFKAYLDVDITLSSEAFHNYMNAAMVHINRALKLIIRLFLVEDLVDSLKLAVF 167

Query: 132 MWVFTYVGALFNGLTLLILALISLFSVPVIYERHQ 166
           MW+ TYVGA+FNG+TLLILA + +FSVP++YE+++
Sbjct: 168 MWLMTYVGAVFNGITLLILAELLIFSVPIVYEKYK 202


>gi|5032055 reticulon 2 isoform A [Homo sapiens]
          Length = 545

 Score =  188 bits (478), Expect = 2e-48
 Identities = 92/183 (50%), Positives = 129/183 (70%)

Query: 11  KVVDLLYWRDIKKTGVVFGASLFLLLSLTVFSIVSVTAYIALALLSVTISFRIYKGVIQA 70
           KV DLLYW+D + +GVVF   +  LL L  FSIVSV A++AL LL  TIS R+Y+ V+QA
Sbjct: 344 KVADLLYWKDTRTSGVVFTGLMVSLLCLLHFSIVSVAAHLALLLLCGTISLRVYRKVLQA 403

Query: 71  IQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKELRRLFLVDDLVDSLKFAV 130
           + + D  +PF+AYL+ ++ ++ E  ++ S+     V     +LR  FLV+DLVDSLK A+
Sbjct: 404 VHRGDGANPFQAYLDVDLTLTREQTERLSHQITSRVVSAATQLRHFFLVEDLVDSLKLAL 463

Query: 131 LMWVFTYVGALFNGLTLLILALISLFSVPVIYERHQAQIDHYLGLANKNVKDAMAKIQAK 190
           L ++ T+VGA+FNGLTLLIL +I LF++P++Y +HQAQID Y+GL    +    AKI+AK
Sbjct: 464 LFYILTFVGAIFNGLTLLILGVIGLFTIPLLYRQHQAQIDQYVGLVTNQLSHIKAKIRAK 523

Query: 191 IPG 193
           IPG
Sbjct: 524 IPG 526


>gi|46255007 reticulon 2 isoform C [Homo sapiens]
          Length = 205

 Score =  188 bits (478), Expect = 2e-48
 Identities = 92/183 (50%), Positives = 129/183 (70%)

Query: 11  KVVDLLYWRDIKKTGVVFGASLFLLLSLTVFSIVSVTAYIALALLSVTISFRIYKGVIQA 70
           KV DLLYW+D + +GVVF   +  LL L  FSIVSV A++AL LL  TIS R+Y+ V+QA
Sbjct: 4   KVADLLYWKDTRTSGVVFTGLMVSLLCLLHFSIVSVAAHLALLLLCGTISLRVYRKVLQA 63

Query: 71  IQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKELRRLFLVDDLVDSLKFAV 130
           + + D  +PF+AYL+ ++ ++ E  ++ S+     V     +LR  FLV+DLVDSLK A+
Sbjct: 64  VHRGDGANPFQAYLDVDLTLTREQTERLSHQITSRVVSAATQLRHFFLVEDLVDSLKLAL 123

Query: 131 LMWVFTYVGALFNGLTLLILALISLFSVPVIYERHQAQIDHYLGLANKNVKDAMAKIQAK 190
           L ++ T+VGA+FNGLTLLIL +I LF++P++Y +HQAQID Y+GL    +    AKI+AK
Sbjct: 124 LFYILTFVGAIFNGLTLLILGVIGLFTIPLLYRQHQAQIDQYVGLVTNQLSHIKAKIRAK 183

Query: 191 IPG 193
           IPG
Sbjct: 184 IPG 186


>gi|46255005 reticulon 2 isoform B [Homo sapiens]
          Length = 472

 Score =  186 bits (473), Expect = 9e-48
 Identities = 91/182 (50%), Positives = 128/182 (70%)

Query: 12  VVDLLYWRDIKKTGVVFGASLFLLLSLTVFSIVSVTAYIALALLSVTISFRIYKGVIQAI 71
           V DLLYW+D + +GVVF   +  LL L  FSIVSV A++AL LL  TIS R+Y+ V+QA+
Sbjct: 272 VADLLYWKDTRTSGVVFTGLMVSLLCLLHFSIVSVAAHLALLLLCGTISLRVYRKVLQAV 331

Query: 72  QKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKELRRLFLVDDLVDSLKFAVL 131
            + D  +PF+AYL+ ++ ++ E  ++ S+     V     +LR  FLV+DLVDSLK A+L
Sbjct: 332 HRGDGANPFQAYLDVDLTLTREQTERLSHQITSRVVSAATQLRHFFLVEDLVDSLKLALL 391

Query: 132 MWVFTYVGALFNGLTLLILALISLFSVPVIYERHQAQIDHYLGLANKNVKDAMAKIQAKI 191
            ++ T+VGA+FNGLTLLIL +I LF++P++Y +HQAQID Y+GL    +    AKI+AKI
Sbjct: 392 FYILTFVGAIFNGLTLLILGVIGLFTIPLLYRQHQAQIDQYVGLVTNQLSHIKAKIRAKI 451

Query: 192 PG 193
           PG
Sbjct: 452 PG 453


>gi|167000400 gamma-aminobutyric acid (GABA) B receptor 1 isoform c
           precursor [Homo sapiens]
          Length = 899

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 16/42 (38%), Positives = 23/42 (54%)

Query: 33  FLLLSLTVFSIVSVTAYIALALLSVTISFRIYKGVIQAIQKS 74
           F  LS  +F  VSV + + + L  V +SF IY   ++ IQ S
Sbjct: 522 FRFLSQKLFISVSVLSSLGIVLAVVCLSFNIYNSHVRYIQNS 563


>gi|11497612 gamma-aminobutyric acid (GABA) B receptor 1 isoform b
           precursor [Homo sapiens]
          Length = 844

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 16/42 (38%), Positives = 23/42 (54%)

Query: 33  FLLLSLTVFSIVSVTAYIALALLSVTISFRIYKGVIQAIQKS 74
           F  LS  +F  VSV + + + L  V +SF IY   ++ IQ S
Sbjct: 467 FRFLSQKLFISVSVLSSLGIVLAVVCLSFNIYNSHVRYIQNS 508


>gi|10835015 gamma-aminobutyric acid (GABA) B receptor 1 isoform a
           precursor [Homo sapiens]
          Length = 961

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 16/42 (38%), Positives = 23/42 (54%)

Query: 33  FLLLSLTVFSIVSVTAYIALALLSVTISFRIYKGVIQAIQKS 74
           F  LS  +F  VSV + + + L  V +SF IY   ++ IQ S
Sbjct: 584 FRFLSQKLFISVSVLSSLGIVLAVVCLSFNIYNSHVRYIQNS 625


>gi|61742777 leucyl/cystinyl aminopeptidase isoform 1 [Homo sapiens]
          Length = 1025

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 6/118 (5%)

Query: 40  VFSIVSVTAYIALALLSVTISFRIYKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYS 99
           +++++    Y+ LA   VT  F++ +  IQ    +DEG P    L S       L++   
Sbjct: 775 IYNLLEKLGYMDLASRLVTRVFKLLQNQIQQQTWTDEGTPSMRELRS------ALLEFAC 828

Query: 100 NSALGHVNCTIKELRRLFLVDDLVDSLKFAVLMWVFTYVGALFNGLTLLILALISLFS 157
              LG+ + T  +L   ++  +   SL   V+  VF        G + L+   IS+ S
Sbjct: 829 THNLGNCSTTAMKLFDDWMASNGTQSLPTDVMTTVFKVGAKTDKGWSFLLGKYISIGS 886


>gi|61742775 leucyl/cystinyl aminopeptidase isoform 2 [Homo sapiens]
          Length = 1011

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 6/118 (5%)

Query: 40  VFSIVSVTAYIALALLSVTISFRIYKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYS 99
           +++++    Y+ LA   VT  F++ +  IQ    +DEG P    L S       L++   
Sbjct: 761 IYNLLEKLGYMDLASRLVTRVFKLLQNQIQQQTWTDEGTPSMRELRS------ALLEFAC 814

Query: 100 NSALGHVNCTIKELRRLFLVDDLVDSLKFAVLMWVFTYVGALFNGLTLLILALISLFS 157
              LG+ + T  +L   ++  +   SL   V+  VF        G + L+   IS+ S
Sbjct: 815 THNLGNCSTTAMKLFDDWMASNGTQSLPTDVMTTVFKVGAKTDKGWSFLLGKYISIGS 872


>gi|45827800 prestin isoform b [Homo sapiens]
          Length = 685

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 8/74 (10%)

Query: 127 KFAVLMWVFTYVGALFNGLTLLILALISLFSVPVIYERHQAQIDHYLGLANKNVKDAMAK 186
           K  + +W+ T+V +LF GL   ++  + +  + VIY   + Q   Y  L      D    
Sbjct: 466 KIELTIWLTTFVSSLFLGLDYGLITAVIIALLTVIY---RTQSPSYKVLGKLPETDVYID 522

Query: 187 IQA-----KIPGLK 195
           I A     +IPG+K
Sbjct: 523 IDAYEEVKEIPGIK 536


>gi|39752683 prestin isoform a [Homo sapiens]
          Length = 744

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 8/74 (10%)

Query: 127 KFAVLMWVFTYVGALFNGLTLLILALISLFSVPVIYERHQAQIDHYLGLANKNVKDAMAK 186
           K  + +W+ T+V +LF GL   ++  + +  + VIY   + Q   Y  L      D    
Sbjct: 466 KIELTIWLTTFVSSLFLGLDYGLITAVIIALLTVIY---RTQSPSYKVLGKLPETDVYID 522

Query: 187 IQA-----KIPGLK 195
           I A     +IPG+K
Sbjct: 523 IDAYEEVKEIPGIK 536


>gi|75677363 lectin, mannose-binding, 1 like [Homo sapiens]
          Length = 526

 Score = 28.5 bits (62), Expect = 3.9
 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 14/68 (20%)

Query: 138 VGALFNGLTLLILALISLFS-------------VPVIYERHQAQIDHYLGLANKNVKDAM 184
           VGAL +G   L+ AL  +               +PV  E H  ++DH LGL  + ++   
Sbjct: 382 VGALLHGQWTLLQALQEMRDAAVRMAAEAQVSYLPVGIEHHFLELDHILGLLQEELR-GP 440

Query: 185 AKIQAKIP 192
           AK  AK P
Sbjct: 441 AKAAAKAP 448


>gi|62945417 dystrophia myotonica-containing WD repeat motif protein
           [Homo sapiens]
          Length = 674

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 8/80 (10%)

Query: 55  LSVTISFRIYKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKELR 114
           L+  I  RIYKG           H F  +  +   IS  L+  +S   + +++   K+  
Sbjct: 151 LNKPIDKRIYKGTQPTC------HDFNQFTAATETIS--LLVGFSAGQVQYLDLIKKDTS 202

Query: 115 RLFLVDDLVDSLKFAVLMWV 134
           +LF  + L+D  K   L W+
Sbjct: 203 KLFNEERLIDKTKVTYLKWL 222


>gi|157388955 schlafen family member 12 [Homo sapiens]
          Length = 578

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 4/83 (4%)

Query: 118 LVDDLVDSLKFAVLMWVFTY---VGALFNGLTLLILALISLFSVPVIYERHQAQIDHYLG 174
           L+ + +DS++   L++  ++   +G   N   L    LIS  S PV+Y  H  Q + + G
Sbjct: 409 LICEEMDSVRKGSLIFSRSWSVDLGLQENHKVLCDALLISQDSPPVLYTFHMVQDEEFKG 468

Query: 175 LANKNVKDAMAKIQAKIPGLKRK 197
            + +       K+ AKI G  +K
Sbjct: 469 YSTQTALTLKQKL-AKIGGYTKK 490


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.325    0.139    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,953,893
Number of Sequences: 37866
Number of extensions: 203327
Number of successful extensions: 762
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 744
Number of HSP's gapped (non-prelim): 25
length of query: 199
length of database: 18,247,518
effective HSP length: 97
effective length of query: 102
effective length of database: 14,574,516
effective search space: 1486600632
effective search space used: 1486600632
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.