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Search of human proteins with 58743316
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|58743316 neuromedin S [Homo sapiens]
(153 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|58743316 neuromedin S [Homo sapiens] 324 2e-89
gi|5729947 neuromedin U [Homo sapiens] 61 4e-10
gi|27597090 suppressor of Ty 6 homolog [Homo sapiens] 32 0.28
gi|27502381 Meis homeobox 2 isoform g [Homo sapiens] 30 0.81
gi|24762244 Meis homeobox 2 isoform a [Homo sapiens] 30 0.81
gi|24762250 Meis homeobox 2 isoform d [Homo sapiens] 30 0.81
gi|24762241 Meis homeobox 2 isoform c [Homo sapiens] 30 0.81
gi|24762246 Meis homeobox 2 isoform b [Homo sapiens] 30 0.81
gi|24762225 Meis homeobox 2 isoform f [Homo sapiens] 30 0.81
gi|219689110 serine (or cysteine) proteinase inhibitor, clade B ... 28 2.3
gi|4505595 serine (or cysteine) proteinase inhibitor, clade B (o... 28 2.3
gi|94536836 2-oxoglutarate and iron-dependent oxygenase domain c... 28 3.1
gi|239756295 PREDICTED: hypothetical protein [Homo sapiens] 27 6.8
gi|120587019 zinc finger protein 318 [Homo sapiens] 27 6.8
gi|148528998 Dmx-like 1 [Homo sapiens] 27 6.8
gi|157738615 coiled-coil alpha-helical rod protein 1 isoform 1 [... 27 8.9
gi|157738613 coiled-coil alpha-helical rod protein 1 isoform 2 [... 27 8.9
gi|122939157 gemin 4 [Homo sapiens] 27 8.9
>gi|58743316 neuromedin S [Homo sapiens]
Length = 153
Score = 324 bits (831), Expect = 2e-89
Identities = 153/153 (100%), Positives = 153/153 (100%)
Query: 1 MKHLRPQFPLILAIYCFCMLQIPSSGFPQPLADPSDGLDIVQLEQLAYCLSQWAPLSRQP 60
MKHLRPQFPLILAIYCFCMLQIPSSGFPQPLADPSDGLDIVQLEQLAYCLSQWAPLSRQP
Sbjct: 1 MKHLRPQFPLILAIYCFCMLQIPSSGFPQPLADPSDGLDIVQLEQLAYCLSQWAPLSRQP 60
Query: 61 KDNQDIYKRFLFHYSRTQEATHPVKTGFPPVHPLMHLAAKLANRRMKRILQRGSGTAAVD 120
KDNQDIYKRFLFHYSRTQEATHPVKTGFPPVHPLMHLAAKLANRRMKRILQRGSGTAAVD
Sbjct: 61 KDNQDIYKRFLFHYSRTQEATHPVKTGFPPVHPLMHLAAKLANRRMKRILQRGSGTAAVD 120
Query: 121 FTKKDHTATWGRPFFLFRPRNGRNIEDEAQIQW 153
FTKKDHTATWGRPFFLFRPRNGRNIEDEAQIQW
Sbjct: 121 FTKKDHTATWGRPFFLFRPRNGRNIEDEAQIQW 153
>gi|5729947 neuromedin U [Homo sapiens]
Length = 174
Score = 60.8 bits (146), Expect = 4e-10
Identities = 41/101 (40%), Positives = 52/101 (51%), Gaps = 10/101 (9%)
Query: 43 LEQLAYCLSQWAPLSRQPKDNQDIYKRFLFHYSRTQEATHPVKTGFPPVHPLMHLAAKLA 102
LE+L + + P Q +D +D KRFLFHYS+TQ+ VHPL+ L L
Sbjct: 78 LEELCFMIMGMLP-KPQEQDEKDNTKRFLFHYSKTQKLGKS-NVVSSVVHPLLQLVPHLH 135
Query: 103 NRRMKRILQRGSGTAAVDFTKKDHTATWGRPFFLFRPRNGR 143
RRMKR VD + A+ R +FLFRPRNGR
Sbjct: 136 ERRMKRF--------RVDEEFQSPFASQSRGYFLFRPRNGR 168
>gi|27597090 suppressor of Ty 6 homolog [Homo sapiens]
Length = 1726
Score = 31.6 bits (70), Expect = 0.28
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 22/85 (25%)
Query: 29 QPLADPSDGLDIVQLEQLAYCLSQWAPLSRQPKDNQDIYKRFLFHYSRTQEATHPVKTGF 88
+PLAD LD +E+L S + +D+Y FL +Y R
Sbjct: 434 KPLADGIRALDTTDMERLKDVQSM--------DELKDVYNHFLLYYGRDI---------- 475
Query: 89 PPVHPLMHLAAKLANRRMKRILQRG 113
P M AAK + +++KR+ + G
Sbjct: 476 ----PKMQNAAKASRKKLKRVREEG 496
>gi|27502381 Meis homeobox 2 isoform g [Homo sapiens]
Length = 388
Score = 30.0 bits (66), Expect = 0.81
Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
Query: 73 HYSRTQEATHPVKTGFPPVHPLMHLAAKLANRRMKRILQRGSGTAAVDFTKKDHTATWGR 132
H R H + G PP+H H A + ++ G+A D K+D A +G
Sbjct: 15 HAPRPIPPVHHLNHG-PPLHATQHYGAHAPH---PNVMPASMGSAVNDALKRDKDAIYGH 70
Query: 133 PFF 135
P F
Sbjct: 71 PLF 73
>gi|24762244 Meis homeobox 2 isoform a [Homo sapiens]
Length = 401
Score = 30.0 bits (66), Expect = 0.81
Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
Query: 73 HYSRTQEATHPVKTGFPPVHPLMHLAAKLANRRMKRILQRGSGTAAVDFTKKDHTATWGR 132
H R H + G PP+H H A + ++ G+A D K+D A +G
Sbjct: 28 HAPRPIPPVHHLNHG-PPLHATQHYGAHAPH---PNVMPASMGSAVNDALKRDKDAIYGH 83
Query: 133 PFF 135
P F
Sbjct: 84 PLF 86
>gi|24762250 Meis homeobox 2 isoform d [Homo sapiens]
Length = 470
Score = 30.0 bits (66), Expect = 0.81
Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
Query: 73 HYSRTQEATHPVKTGFPPVHPLMHLAAKLANRRMKRILQRGSGTAAVDFTKKDHTATWGR 132
H R H + G PP+H H A + ++ G+A D K+D A +G
Sbjct: 28 HAPRPIPPVHHLNHG-PPLHATQHYGAHAPH---PNVMPASMGSAVNDALKRDKDAIYGH 83
Query: 133 PFF 135
P F
Sbjct: 84 PLF 86
>gi|24762241 Meis homeobox 2 isoform c [Homo sapiens]
Length = 477
Score = 30.0 bits (66), Expect = 0.81
Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
Query: 73 HYSRTQEATHPVKTGFPPVHPLMHLAAKLANRRMKRILQRGSGTAAVDFTKKDHTATWGR 132
H R H + G PP+H H A + ++ G+A D K+D A +G
Sbjct: 28 HAPRPIPPVHHLNHG-PPLHATQHYGAHAPH---PNVMPASMGSAVNDALKRDKDAIYGH 83
Query: 133 PFF 135
P F
Sbjct: 84 PLF 86
>gi|24762246 Meis homeobox 2 isoform b [Homo sapiens]
Length = 394
Score = 30.0 bits (66), Expect = 0.81
Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
Query: 73 HYSRTQEATHPVKTGFPPVHPLMHLAAKLANRRMKRILQRGSGTAAVDFTKKDHTATWGR 132
H R H + G PP+H H A + ++ G+A D K+D A +G
Sbjct: 28 HAPRPIPPVHHLNHG-PPLHATQHYGAHAPH---PNVMPASMGSAVNDALKRDKDAIYGH 83
Query: 133 PFF 135
P F
Sbjct: 84 PLF 86
>gi|24762225 Meis homeobox 2 isoform f [Homo sapiens]
Length = 381
Score = 30.0 bits (66), Expect = 0.81
Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
Query: 73 HYSRTQEATHPVKTGFPPVHPLMHLAAKLANRRMKRILQRGSGTAAVDFTKKDHTATWGR 132
H R H + G PP+H H A + ++ G+A D K+D A +G
Sbjct: 15 HAPRPIPPVHHLNHG-PPLHATQHYGAHAPH---PNVMPASMGSAVNDALKRDKDAIYGH 70
Query: 133 PFF 135
P F
Sbjct: 71 PLF 73
>gi|219689110 serine (or cysteine) proteinase inhibitor, clade B
(ovalbumin), member 2 [Homo sapiens]
Length = 415
Score = 28.5 bits (62), Expect = 2.3
Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 7/56 (12%)
Query: 19 MLQIPSSG-------FPQPLADPSDGLDIVQLEQLAYCLSQWAPLSRQPKDNQDIY 67
+L++P +G P +AD S GL++++ E L++W + +D ++Y
Sbjct: 253 ILELPYAGDVSMFLLLPDEIADVSTGLELLESEITYDKLNKWTSKDKMAEDEVEVY 308
>gi|4505595 serine (or cysteine) proteinase inhibitor, clade B
(ovalbumin), member 2 [Homo sapiens]
Length = 415
Score = 28.5 bits (62), Expect = 2.3
Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 7/56 (12%)
Query: 19 MLQIPSSG-------FPQPLADPSDGLDIVQLEQLAYCLSQWAPLSRQPKDNQDIY 67
+L++P +G P +AD S GL++++ E L++W + +D ++Y
Sbjct: 253 ILELPYAGDVSMFLLLPDEIADVSTGLELLESEITYDKLNKWTSKDKMAEDEVEVY 308
>gi|94536836 2-oxoglutarate and iron-dependent oxygenase domain
containing 1 [Homo sapiens]
Length = 542
Score = 28.1 bits (61), Expect = 3.1
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 9/88 (10%)
Query: 3 HLRPQFPLILAIYCFCMLQIPS-SGFPQPLADPSDGLDIVQLEQLAYCLSQWAPLSRQPK 61
H + +F L L +YC C P GF +A D E+L + L+ +
Sbjct: 453 HSKAEFALDLILYCGCEGWEPEYGGFTSYIAKGED-------EELLTVNPESNSLALVYR 505
Query: 62 DNQDI-YKRFLFHYSRTQEATHPVKTGF 88
D + + + + + H S Q+ T P +TGF
Sbjct: 506 DRETLKFVKHINHRSLEQKKTFPNRTGF 533
>gi|239756295 PREDICTED: hypothetical protein [Homo sapiens]
Length = 117
Score = 26.9 bits (58), Expect = 6.8
Identities = 10/24 (41%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 18 CMLQIPSSGFPQPLADPSDGLDIV 41
C+ +P +G P+P A P GLD++
Sbjct: 9 CLFHVPFTGLPEPTA-PGKGLDLM 31
>gi|120587019 zinc finger protein 318 [Homo sapiens]
Length = 2279
Score = 26.9 bits (58), Expect = 6.8
Identities = 28/99 (28%), Positives = 38/99 (38%), Gaps = 14/99 (14%)
Query: 50 LSQWAPLSRQPKDNQDIYKRFLFHYSRTQEATHPVKTGFPPVHPLMHLAAKLANRRMKRI 109
L QW PL PKDN + ++F H P H L + R
Sbjct: 450 LYQWGPLPGIPKDNSPLREKF------GSFLCHKDNLDLKAEGPERHTDFLLPHERAS-- 501
Query: 110 LQRGSGTAAVDFTKKDHTATWGRPFFLFRPRNGRNIEDE 148
Q GSG + + D T+T + R R+ +IEDE
Sbjct: 502 -QDGSGFSRILSMLADSTSTQEK-----RRRSFPDIEDE 534
>gi|148528998 Dmx-like 1 [Homo sapiens]
Length = 3027
Score = 26.9 bits (58), Expect = 6.8
Identities = 22/88 (25%), Positives = 34/88 (38%), Gaps = 8/88 (9%)
Query: 24 SSGFPQPLADPSDGLDIVQLEQLAYCLSQWAPLSRQPKDNQDIYK------RFLFHYSRT 77
S FP L+ DG+ +V ++ + QW P S+Q D Y L S +
Sbjct: 1212 SPPFPVSLSWVRDGILVVGMDCEMHVYCQWQPSSKQEPVITDSYSGSTPSITSLIKQSNS 1271
Query: 78 QEATHPVKTGFPPVHPLMHLAAKLANRR 105
HP K + LA K+ ++
Sbjct: 1272 SSGLHPPKKTL--TRSMTSLAQKICGKK 1297
>gi|157738615 coiled-coil alpha-helical rod protein 1 isoform 1
[Homo sapiens]
Length = 871
Score = 26.6 bits (57), Expect = 8.9
Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 8/61 (13%)
Query: 9 PLILAIYCFCMLQIPSSGFPQPLADPSDGLDIVQLEQLAYCLSQWAPLSRQPKDNQDIYK 68
P ++A +C G P LA+P L + L +C+ ++PL+R +D++++ +
Sbjct: 20 PRVMACWCL-------DGLPSGLAEPWRELWRWRSRPL-HCVPPFSPLARSSRDHRNLRR 71
Query: 69 R 69
R
Sbjct: 72 R 72
>gi|157738613 coiled-coil alpha-helical rod protein 1 isoform 2
[Homo sapiens]
Length = 835
Score = 26.6 bits (57), Expect = 8.9
Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 8/61 (13%)
Query: 9 PLILAIYCFCMLQIPSSGFPQPLADPSDGLDIVQLEQLAYCLSQWAPLSRQPKDNQDIYK 68
P ++A +C G P LA+P L + L +C+ ++PL+R +D++++ +
Sbjct: 20 PRVMACWCL-------DGLPSGLAEPWRELWRWRSRPL-HCVPPFSPLARSSRDHRNLRR 71
Query: 69 R 69
R
Sbjct: 72 R 72
>gi|122939157 gemin 4 [Homo sapiens]
Length = 1058
Score = 26.6 bits (57), Expect = 8.9
Identities = 28/118 (23%), Positives = 48/118 (40%), Gaps = 4/118 (3%)
Query: 33 DPSDGLDIVQLEQLAYCLSQWAPLSRQPKDNQDI---YKRFLFHYSRTQEATHPVKTGFP 89
DP + V L++LA +S W ++ P Q + K S T A P +T F
Sbjct: 256 DPQEVSATVYLDKLATVISVWNSDTQNPYHQQALAEKVKEAERDVSLTSLAKLPSETIFV 315
Query: 90 PVHPLMHLAAKLANRRMKRILQRGSGTAAVDFTKKDHTATWGRPFFLFRPRNGRNIED 147
L HL + ++ +L+ GT+ + D ++ + L+ R + ED
Sbjct: 316 GCEFLHHLLREW-GEELQAVLRSSQGTSYDSYRLCDSLTSFSQNATLYLNRTSLSKED 372
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.326 0.139 0.453
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,606,303
Number of Sequences: 37866
Number of extensions: 284963
Number of successful extensions: 745
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 738
Number of HSP's gapped (non-prelim): 18
length of query: 153
length of database: 18,247,518
effective HSP length: 93
effective length of query: 60
effective length of database: 14,725,980
effective search space: 883558800
effective search space used: 883558800
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.