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Search of human proteins with 5730035
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|5730035 small inducible cytokine A27 precursor [Homo
sapiens]
(112 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|5730035 small inducible cytokine A27 precursor [Homo sapiens] 234 1e-62
gi|22538811 chemokine (C-C motif) ligand 28 precursor [Homo sapi... 65 9e-12
gi|22538796 small inducible cytokine A25 precursor [Homo sapiens] 33 0.064
gi|46488919 astrotactin 2 isoform c [Homo sapiens] 28 2.1
gi|46488917 astrotactin 2 isoform b [Homo sapiens] 28 2.1
gi|46488915 astrotactin 2 isoform a [Homo sapiens] 28 2.1
gi|239754662 PREDICTED: hypothetical protein [Homo sapiens] 27 3.5
gi|239749226 PREDICTED: hypothetical protein [Homo sapiens] 27 3.5
gi|239743303 PREDICTED: hypothetical protein [Homo sapiens] 27 3.5
gi|239508986 PREDICTED: hypothetical protein [Homo sapiens] 27 3.5
gi|38348310 hypothetical protein LOC341032 [Homo sapiens] 27 3.5
gi|33589814 zyg-11 homolog B (C. elegans)-like [Homo sapiens] 27 3.5
gi|166064034 PAK-interacting exchange factor beta isoform c [Hom... 26 6.0
gi|4885587 small inducible cytokine A13 precursor [Homo sapiens] 26 6.0
gi|151301213 acid phosphatase 6, lysophosphatidic [Homo sapiens] 26 6.0
gi|82546847 hypothetical protein LOC9907 [Homo sapiens] 26 6.0
gi|239750425 PREDICTED: hypothetical protein XP_002347391 [Homo ... 26 7.8
gi|155030232 proline, glutamic acid and leucine rich protein 1 [... 26 7.8
>gi|5730035 small inducible cytokine A27 precursor [Homo sapiens]
Length = 112
Score = 234 bits (597), Expect = 1e-62
Identities = 112/112 (100%), Positives = 112/112 (100%)
Query: 1 MKGPPTFCSLLLLSLLLSPDPTAAFLLPPSTACCTQLYRKPLSDKLLRKVIQVELQEADG 60
MKGPPTFCSLLLLSLLLSPDPTAAFLLPPSTACCTQLYRKPLSDKLLRKVIQVELQEADG
Sbjct: 1 MKGPPTFCSLLLLSLLLSPDPTAAFLLPPSTACCTQLYRKPLSDKLLRKVIQVELQEADG 60
Query: 61 DCHLQAFVLHLAQRSICIHPQNPSLSQWFEHQERKLHGTLPKLNFGMLRKMG 112
DCHLQAFVLHLAQRSICIHPQNPSLSQWFEHQERKLHGTLPKLNFGMLRKMG
Sbjct: 61 DCHLQAFVLHLAQRSICIHPQNPSLSQWFEHQERKLHGTLPKLNFGMLRKMG 112
>gi|22538811 chemokine (C-C motif) ligand 28 precursor [Homo
sapiens]
Length = 127
Score = 65.5 bits (158), Expect = 9e-12
Identities = 29/73 (39%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 26 LLPPSTACCTQLYRKPLSDKLLRKVIQVELQEADGDCHLQAFVLHLAQRSICIHPQNPSL 85
+LP +++CCT++ +S +LL +V +Q ADGDC L A +LH+ +R IC+ P N ++
Sbjct: 23 ILPIASSCCTEVSHH-ISRRLLERVNMCRIQRADGDCDLAAVILHVKRRRICVSPHNHTV 81
Query: 86 SQWFEHQERKLHG 98
QW + Q K +G
Sbjct: 82 KQWMKVQAAKKNG 94
>gi|22538796 small inducible cytokine A25 precursor [Homo sapiens]
Length = 150
Score = 32.7 bits (73), Expect = 0.064
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 34 CTQLYRKPLSDKLLRKVIQVELQEADGDCHLQAFVLHLAQ--RSICIHPQN 82
C Y P+ +LR+ +QE G C+L A + +L + R +C +P++
Sbjct: 30 CCLAYHYPIGWAVLRRAWTYRIQEVSGSCNLPAAIFYLPKRHRKVCGNPKS 80
>gi|46488919 astrotactin 2 isoform c [Homo sapiens]
Length = 1339
Score = 27.7 bits (60), Expect = 2.1
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 3 GPPTFCSLLLLSLLLSPDPTAAFLLPPSTACCTQLYRKPLSDKLLRKVIQVELQEAD 59
GPP LLLL LLL P P LL +TA ++ P K + L+E+D
Sbjct: 27 GPPPLLPLLLLFLLLLPPPP---LLAGATAAASREPDSPCRLKTVTVSTLPALRESD 80
>gi|46488917 astrotactin 2 isoform b [Homo sapiens]
Length = 1335
Score = 27.7 bits (60), Expect = 2.1
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 3 GPPTFCSLLLLSLLLSPDPTAAFLLPPSTACCTQLYRKPLSDKLLRKVIQVELQEAD 59
GPP LLLL LLL P P LL +TA ++ P K + L+E+D
Sbjct: 27 GPPPLLPLLLLFLLLLPPPP---LLAGATAAASREPDSPCRLKTVTVSTLPALRESD 80
>gi|46488915 astrotactin 2 isoform a [Homo sapiens]
Length = 1288
Score = 27.7 bits (60), Expect = 2.1
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 3 GPPTFCSLLLLSLLLSPDPTAAFLLPPSTACCTQLYRKPLSDKLLRKVIQVELQEAD 59
GPP LLLL LLL P P LL +TA ++ P K + L+E+D
Sbjct: 27 GPPPLLPLLLLFLLLLPPPP---LLAGATAAASREPDSPCRLKTVTVSTLPALRESD 80
>gi|239754662 PREDICTED: hypothetical protein [Homo sapiens]
Length = 195
Score = 26.9 bits (58), Expect = 3.5
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 65 QAFVLHLAQRSICIHPQNPSLSQWFEHQ-ERKLHGTLP 101
Q V LA+ S+C HP P + E Q E+ L+G +P
Sbjct: 53 QPLVKSLARASLCTHPGLPRTREHRELQWEQTLYGVVP 90
>gi|239749226 PREDICTED: hypothetical protein [Homo sapiens]
Length = 195
Score = 26.9 bits (58), Expect = 3.5
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 65 QAFVLHLAQRSICIHPQNPSLSQWFEHQ-ERKLHGTLP 101
Q V LA+ S+C HP P + E Q E+ L+G +P
Sbjct: 53 QPLVKSLARASLCTHPGLPRTREHRELQWEQTLYGVVP 90
>gi|239743303 PREDICTED: hypothetical protein [Homo sapiens]
Length = 195
Score = 26.9 bits (58), Expect = 3.5
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 65 QAFVLHLAQRSICIHPQNPSLSQWFEHQ-ERKLHGTLP 101
Q V LA+ S+C HP P + E Q E+ L+G +P
Sbjct: 53 QPLVKSLARASLCTHPGLPRTREHRELQWEQTLYGVVP 90
>gi|239508986 PREDICTED: hypothetical protein [Homo sapiens]
Length = 195
Score = 26.9 bits (58), Expect = 3.5
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 65 QAFVLHLAQRSICIHPQNPSLSQWFEHQ-ERKLHGTLP 101
Q V LA+ S+C HP P + E Q E+ L+G +P
Sbjct: 53 QPLVKSLARASLCTHPGLPRTREHRELQWEQTLYGVVP 90
>gi|38348310 hypothetical protein LOC341032 [Homo sapiens]
Length = 236
Score = 26.9 bits (58), Expect = 3.5
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
Query: 16 LLSPDPTAA---FLLPPSTACCTQL 37
L PDP +A LPPST+C +QL
Sbjct: 115 LSQPDPVSADALLTLPPSTSCLSQL 139
>gi|33589814 zyg-11 homolog B (C. elegans)-like [Homo sapiens]
Length = 766
Score = 26.9 bits (58), Expect = 3.5
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 38 YRKPLSDKLLRKVIQVELQEADGDCHLQAFVLHLAQRSICIHPQNPSLSQWFEHQERKLH 97
YR S KL R+VIQV L ++++ QR+ C+ N S+ + E Q R+++
Sbjct: 426 YRSEQSVKLRRQVIQVVLN------GMESYQEVTVQRNCCLTLCNFSIPEELEFQYRRVN 479
Query: 98 GTL 100
L
Sbjct: 480 ELL 482
>gi|166064034 PAK-interacting exchange factor beta isoform c [Homo
sapiens]
Length = 803
Score = 26.2 bits (56), Expect = 6.0
Identities = 25/106 (23%), Positives = 38/106 (35%), Gaps = 14/106 (13%)
Query: 11 LLLSLLLSPDP-----TAAFLLPPSTACCTQLYRKPLSDKLLRKVIQVELQEADGDCHLQ 65
L L LL P LL ST LY+ +K+L ++ + AD
Sbjct: 81 LRLELLFPPSQPPQHLVTTILLSASTFDANDLYQGQNFNKVLSSLVTLNKVTAD------ 134
Query: 66 AFVLHLAQRSICIHPQNPSLSQWFEHQERKLHGTLPKLNFGMLRKM 111
+ L S+C P + + + + LH KL G R +
Sbjct: 135 ---IGLGSDSVCARPSSHRIKSFDSLGSQSLHTRTSKLFQGQYRSL 177
>gi|4885587 small inducible cytokine A13 precursor [Homo sapiens]
Length = 98
Score = 26.2 bits (56), Expect = 6.0
Identities = 26/100 (26%), Positives = 38/100 (38%), Gaps = 9/100 (9%)
Query: 1 MKGPPTFCSLLLLSLLLSPDPTAA--FLLPPSTACCTQLYRKPLSDKLLRKVIQVELQEA 58
MK LLL++ +P A L PST C T +K +L VI
Sbjct: 1 MKVSAVLLCLLLMTAAFNPQGLAQPDALNVPSTCCFTFSSKKISLQRLKSYVITTSR--- 57
Query: 59 DGDCHLQAFVLHLAQ-RSICIHPQNPSLSQWFEHQERKLH 97
C +A + + IC P+ + + +H RK H
Sbjct: 58 ---CPQKAVIFRTKLGKEICADPKEKWVQNYMKHLGRKAH 94
>gi|151301213 acid phosphatase 6, lysophosphatidic [Homo sapiens]
Length = 428
Score = 26.2 bits (56), Expect = 6.0
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 48 RKVIQVELQEADGDCHLQAFVLHL 71
R+V ELQEADG C + +L L
Sbjct: 27 RRVALAELQEADGQCPVDRSLLKL 50
>gi|82546847 hypothetical protein LOC9907 [Homo sapiens]
Length = 807
Score = 26.2 bits (56), Expect = 6.0
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 12 LLSLLLSPDPTAAFLLPPSTACCTQLYRKPLSDKL---LRKVIQVELQEA 58
LL+LL P A F+L PST C+ Y + + L LR V ++ +EA
Sbjct: 754 LLTLLKMPS-VAQFVLTPSTEVCSPRYHRDANTALPLALRTVSRLVEREA 802
>gi|239750425 PREDICTED: hypothetical protein XP_002347391 [Homo
sapiens]
Length = 341
Score = 25.8 bits (55), Expect = 7.8
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 15 LLLSPDPTAAFLLPPSTACCTQLYRKPLSDKLL-RKVIQVELQE 57
++L P P+ A +P + + +YR P S LL + V+ E QE
Sbjct: 246 VVLHPIPSGALAIPVARSLSWPVYRDPASHPLLPQPVLHPEPQE 289
>gi|155030232 proline, glutamic acid and leucine rich protein 1
[Homo sapiens]
Length = 1130
Score = 25.8 bits (55), Expect = 7.8
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 4/28 (14%)
Query: 11 LLLSLLLSPDPTAAFLLPPSTACCTQLY 38
LLL+LLL+P P PP AC Q +
Sbjct: 582 LLLALLLAPSPRC----PPPLACALQAF 605
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.325 0.139 0.440
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,156,100
Number of Sequences: 37866
Number of extensions: 215905
Number of successful extensions: 632
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 625
Number of HSP's gapped (non-prelim): 19
length of query: 112
length of database: 18,247,518
effective HSP length: 82
effective length of query: 30
effective length of database: 15,142,506
effective search space: 454275180
effective search space used: 454275180
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.