Search of human proteins with 56549681

Search of human proteins with 56549681

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|56549681 small CTD phosphatase 3 isoform 2 [Homo sapiens]
         (265 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|56549681 small CTD phosphatase 3 isoform 2 [Homo sapiens]          542   e-154
gi|56549683 small CTD phosphatase 3 isoform 1 [Homo sapiens]          534   e-152
gi|32813443 CTD (carboxy-terminal domain, RNA polymerase II, pol...   361   e-100
gi|10864009 CTD (carboxy-terminal domain, RNA polymerase II, pol...   356   1e-98
gi|93004102 nuclear LIM interactor-interacting factor 2 [Homo sa...   316   1e-86
gi|100815975 CTD (carboxy-terminal domain, RNA polymerase II, po...   160   1e-39
gi|219555649 dullard homolog [Homo sapiens]                           147   7e-36
gi|31542547 dullard homolog [Homo sapiens]                            147   7e-36
gi|48526509 translocase of inner mitochondrial membrane 50 homol...    83   3e-16
gi|67188550 CTD (carboxy-terminal domain, RNA polymerase II, pol...    45   5e-05
gi|67188445 CTD (carboxy-terminal domain, RNA polymerase II, pol...    45   5e-05
gi|95089461 discs large homolog 5 [Homo sapiens]                       30   2.8  
gi|46575934 KIAA1680 protein isoform 2 [Homo sapiens]                  29   3.7  
gi|222831647 KIAA1680 protein isoform 1 [Homo sapiens]                 29   3.7  
gi|7669518 neuregulin 1 isoform SMDF [Homo sapiens]                    29   4.8  
gi|24797106 UBX domain containing 8 [Homo sapiens]                     28   6.3  
gi|109689723 abl interactor 2 [Homo sapiens]                           28   8.3  

>gi|56549681 small CTD phosphatase 3 isoform 2 [Homo sapiens]
          Length = 265

 Score =  542 bits (1397), Expect = e-154
 Identities = 265/265 (100%), Positives = 265/265 (100%)

Query: 1   MDGPAIITQVTNPKEDEGRLPGAGEKASQCNVSLKKQRSRSILSSFFCCFRDYNVEAPPP 60
           MDGPAIITQVTNPKEDEGRLPGAGEKASQCNVSLKKQRSRSILSSFFCCFRDYNVEAPPP
Sbjct: 1   MDGPAIITQVTNPKEDEGRLPGAGEKASQCNVSLKKQRSRSILSSFFCCFRDYNVEAPPP 60

Query: 61  SSPSVLPPLVEENGGLQKPPAKYLLPEVTVLDYGKKCVVIDLDETLVHSSFKPISNADFI 120
           SSPSVLPPLVEENGGLQKPPAKYLLPEVTVLDYGKKCVVIDLDETLVHSSFKPISNADFI
Sbjct: 61  SSPSVLPPLVEENGGLQKPPAKYLLPEVTVLDYGKKCVVIDLDETLVHSSFKPISNADFI 120

Query: 121 VPVEIDGTIHQVYVLKRPHVDEFLQRMGQLFECVLFTASLAKYADPVADLLDRWGVFRAR 180
           VPVEIDGTIHQVYVLKRPHVDEFLQRMGQLFECVLFTASLAKYADPVADLLDRWGVFRAR
Sbjct: 121 VPVEIDGTIHQVYVLKRPHVDEFLQRMGQLFECVLFTASLAKYADPVADLLDRWGVFRAR 180

Query: 181 LFRESCVFHRGNYVKDLSRLGRELSKVIIVDNSPASYIFHPENAVPVQSWFDDMTDTELL 240
           LFRESCVFHRGNYVKDLSRLGRELSKVIIVDNSPASYIFHPENAVPVQSWFDDMTDTELL
Sbjct: 181 LFRESCVFHRGNYVKDLSRLGRELSKVIIVDNSPASYIFHPENAVPVQSWFDDMTDTELL 240

Query: 241 DLIPFFEGLSREDDVYSMLHRLCNR 265
           DLIPFFEGLSREDDVYSMLHRLCNR
Sbjct: 241 DLIPFFEGLSREDDVYSMLHRLCNR 265


>gi|56549683 small CTD phosphatase 3 isoform 1 [Homo sapiens]
          Length = 276

 Score =  534 bits (1375), Expect = e-152
 Identities = 265/276 (96%), Positives = 265/276 (96%), Gaps = 11/276 (3%)

Query: 1   MDGPAIITQVTNPKEDEGRLPGAGEKASQCNVSLKKQRSRSILSSFFCCFRDYNVEAPPP 60
           MDGPAIITQVTNPKEDEGRLPGAGEKASQCNVSLKKQRSRSILSSFFCCFRDYNVEAPPP
Sbjct: 1   MDGPAIITQVTNPKEDEGRLPGAGEKASQCNVSLKKQRSRSILSSFFCCFRDYNVEAPPP 60

Query: 61  SSPSVLPPLVEENGGLQK-----------PPAKYLLPEVTVLDYGKKCVVIDLDETLVHS 109
           SSPSVLPPLVEENGGLQK           PPAKYLLPEVTVLDYGKKCVVIDLDETLVHS
Sbjct: 61  SSPSVLPPLVEENGGLQKGDQRQVIPIPSPPAKYLLPEVTVLDYGKKCVVIDLDETLVHS 120

Query: 110 SFKPISNADFIVPVEIDGTIHQVYVLKRPHVDEFLQRMGQLFECVLFTASLAKYADPVAD 169
           SFKPISNADFIVPVEIDGTIHQVYVLKRPHVDEFLQRMGQLFECVLFTASLAKYADPVAD
Sbjct: 121 SFKPISNADFIVPVEIDGTIHQVYVLKRPHVDEFLQRMGQLFECVLFTASLAKYADPVAD 180

Query: 170 LLDRWGVFRARLFRESCVFHRGNYVKDLSRLGRELSKVIIVDNSPASYIFHPENAVPVQS 229
           LLDRWGVFRARLFRESCVFHRGNYVKDLSRLGRELSKVIIVDNSPASYIFHPENAVPVQS
Sbjct: 181 LLDRWGVFRARLFRESCVFHRGNYVKDLSRLGRELSKVIIVDNSPASYIFHPENAVPVQS 240

Query: 230 WFDDMTDTELLDLIPFFEGLSREDDVYSMLHRLCNR 265
           WFDDMTDTELLDLIPFFEGLSREDDVYSMLHRLCNR
Sbjct: 241 WFDDMTDTELLDLIPFFEGLSREDDVYSMLHRLCNR 276


>gi|32813443 CTD (carboxy-terminal domain, RNA polymerase II,
           polypeptide A) small phosphatase 1 isoform 2 [Homo
           sapiens]
          Length = 260

 Score =  361 bits (926), Expect = e-100
 Identities = 182/261 (69%), Positives = 211/261 (80%), Gaps = 6/261 (2%)

Query: 1   MDGPAIITQVTNPKEDEGRLPGAGEKASQCNVSLKKQRSRSILSSFFCCFRDYNVEAPPP 60
           MD  A+ITQ++  +E  G L G G++ S  +   +K RSR IL S FCC    + EA P 
Sbjct: 1   MDSSAVITQISK-EEARGPLRGKGDQKSAAS---QKPRSRGILHSLFCCVCRDDGEALPA 56

Query: 61  SSPSVLPPLVEENGGLQKPPAKYLLPEVTVLDYGKKCVVIDLDETLVHSSFKPISNADFI 120
            S +  P LVEENG + K P +YLLPE    D  K CVVIDLDETLVHSSFKP++NADFI
Sbjct: 57  HSGA--PLLVEENGAIPKTPVQYLLPEAKAQDSDKICVVIDLDETLVHSSFKPVNNADFI 114

Query: 121 VPVEIDGTIHQVYVLKRPHVDEFLQRMGQLFECVLFTASLAKYADPVADLLDRWGVFRAR 180
           +PVEIDG +HQVYVLKRPHVDEFLQRMG+LFECVLFTASLAKYADPVADLLD+WG FRAR
Sbjct: 115 IPVEIDGVVHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDKWGAFRAR 174

Query: 181 LFRESCVFHRGNYVKDLSRLGRELSKVIIVDNSPASYIFHPENAVPVQSWFDDMTDTELL 240
           LFRESCVFHRGNYVKDLSRLGR+L +V+I+DNSPASY+FHP+NAVPV SWFD+M+DTEL 
Sbjct: 175 LFRESCVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASWFDNMSDTELH 234

Query: 241 DLIPFFEGLSREDDVYSMLHR 261
           DL+PFFE LSR DDVYS+L +
Sbjct: 235 DLLPFFEQLSRVDDVYSVLRQ 255


>gi|10864009 CTD (carboxy-terminal domain, RNA polymerase II,
           polypeptide A) small phosphatase 1 isoform 1 [Homo
           sapiens]
          Length = 261

 Score =  356 bits (914), Expect = 1e-98
 Identities = 182/262 (69%), Positives = 211/262 (80%), Gaps = 7/262 (2%)

Query: 1   MDGPAIITQVTNPKEDEGRLPGAGEKASQCNVSLKKQRSRSILSSFFCCFRDYNVEAPPP 60
           MD  A+ITQ++  +E  G L G G++ S  +   +K RSR IL S FCC    + EA P 
Sbjct: 1   MDSSAVITQISK-EEARGPLRGKGDQKSAAS---QKPRSRGILHSLFCCVCRDDGEALPA 56

Query: 61  SSPSVLPPLVEENGGLQKP-PAKYLLPEVTVLDYGKKCVVIDLDETLVHSSFKPISNADF 119
            S +  P LVEENG + K  P +YLLPE    D  K CVVIDLDETLVHSSFKP++NADF
Sbjct: 57  HSGA--PLLVEENGAIPKQTPVQYLLPEAKAQDSDKICVVIDLDETLVHSSFKPVNNADF 114

Query: 120 IVPVEIDGTIHQVYVLKRPHVDEFLQRMGQLFECVLFTASLAKYADPVADLLDRWGVFRA 179
           I+PVEIDG +HQVYVLKRPHVDEFLQRMG+LFECVLFTASLAKYADPVADLLD+WG FRA
Sbjct: 115 IIPVEIDGVVHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKYADPVADLLDKWGAFRA 174

Query: 180 RLFRESCVFHRGNYVKDLSRLGRELSKVIIVDNSPASYIFHPENAVPVQSWFDDMTDTEL 239
           RLFRESCVFHRGNYVKDLSRLGR+L +V+I+DNSPASY+FHP+NAVPV SWFD+M+DTEL
Sbjct: 175 RLFRESCVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASWFDNMSDTEL 234

Query: 240 LDLIPFFEGLSREDDVYSMLHR 261
            DL+PFFE LSR DDVYS+L +
Sbjct: 235 HDLLPFFEQLSRVDDVYSVLRQ 256


>gi|93004102 nuclear LIM interactor-interacting factor 2 [Homo
           sapiens]
          Length = 271

 Score =  316 bits (810), Expect = 1e-86
 Identities = 175/275 (63%), Positives = 199/275 (72%), Gaps = 20/275 (7%)

Query: 1   MDGPAIITQVTNPKEDEGRLPGAGEKASQCNVSLKKQRSRSILSSFFCCFRDYNVEAPPP 60
           M+  +IITQ    +ED   L   G  +     S KK R R+I  + FCCFR  +V     
Sbjct: 1   MEHGSIITQAR--REDALVLTKQGLVSKS---SPKKPRGRNIFKALFCCFRAQHVGQS-- 53

Query: 61  SSPSVLPPLVEENGGLQKP-------------PAKYLLPEVTVLDYGKKCVVIDLDETLV 107
           SS + L    EE   + K              P   LLPEVT  D G+ CVVIDLDETLV
Sbjct: 54  SSSTELAAYKEEANTIAKSDLLQCLQYQFYQIPGTCLLPEVTEEDQGRICVVIDLDETLV 113

Query: 108 HSSFKPISNADFIVPVEIDGTIHQVYVLKRPHVDEFLQRMGQLFECVLFTASLAKYADPV 167
           HSSFKPI+NADFIVP+EI+GT HQVYVLKRP+VDEFL+RMG+LFECVLFTASLAKYADPV
Sbjct: 114 HSSFKPINNADFIVPIEIEGTTHQVYVLKRPYVDEFLRRMGELFECVLFTASLAKYADPV 173

Query: 168 ADLLDRWGVFRARLFRESCVFHRGNYVKDLSRLGRELSKVIIVDNSPASYIFHPENAVPV 227
            DLLDR GVFRARLFRESCVFH+G YVKDLSRLGR+L K +I+DNSPASYIFHPENAVPV
Sbjct: 174 TDLLDRCGVFRARLFRESCVFHQGCYVKDLSRLGRDLRKTLILDNSPASYIFHPENAVPV 233

Query: 228 QSWFDDMTDTELLDLIPFFEGLSREDDVYSMLHRL 262
           QSWFDDM DTELL+LIP FE LS  +DVY+ L +L
Sbjct: 234 QSWFDDMADTELLNLIPIFEELSGAEDVYTSLGQL 268


>gi|100815975 CTD (carboxy-terminal domain, RNA polymerase II,
           polypeptide A) small phosphatase like 2 [Homo sapiens]
          Length = 466

 Score =  160 bits (405), Expect = 1e-39
 Identities = 89/185 (48%), Positives = 117/185 (63%), Gaps = 7/185 (3%)

Query: 66  LPPLVEENGGLQKPPAKYLLPEVTVLDYGKKCVVIDLDETLVHSSFKPISNADFIVPVEI 125
           +PPL EE   L + PA  L    T     +  +V+DLDETLVH S   + +A    PV  
Sbjct: 264 VPPLTEEQ--LNRKPALPLKTRSTP----EFSLVLDLDETLVHCSLNELEDAALTFPVLF 317

Query: 126 DGTIHQVYVLKRPHVDEFLQRMGQLFECVLFTASLAKYADPVADLLD-RWGVFRARLFRE 184
              I+QVYV  RP   EFL+RM Q++E +LFTAS   YAD + ++LD +  + R RLFRE
Sbjct: 318 QDVIYQVYVRLRPFFREFLERMSQMYEIILFTASKKVYADKLLNILDPKKQLVRHRLFRE 377

Query: 185 SCVFHRGNYVKDLSRLGRELSKVIIVDNSPASYIFHPENAVPVQSWFDDMTDTELLDLIP 244
            CV  +GNY+KDL+ LGR+LSK II+DNSP ++ +   N +P++SWF D  D ELL LIP
Sbjct: 378 HCVCVQGNYIKDLNILGRDLSKTIIIDNSPQAFAYQLSNGIPIESWFMDKNDNELLKLIP 437

Query: 245 FFEGL 249
           F E L
Sbjct: 438 FLEKL 442


>gi|219555649 dullard homolog [Homo sapiens]
          Length = 244

 Score =  147 bits (372), Expect = 7e-36
 Identities = 77/176 (43%), Positives = 113/176 (64%), Gaps = 9/176 (5%)

Query: 95  KKCVVIDLDETLVHS--------SFKPISNADFIVPVEIDGTIHQVYVLKRPHVDEFLQR 146
           +K +V+DLDETL+HS        + +P +  DFI+ V ID    + +V KRPHVD FL+ 
Sbjct: 61  RKILVLDLDETLIHSHHDGVLRPTVRPGTPPDFILKVVIDKHPVRFFVHKRPHVDFFLEV 120

Query: 147 MGQLFECVLFTASLAKYADPVADLLDRW-GVFRARLFRESCVFHRGNYVKDLSRLGRELS 205
           + Q +E V+FTAS+  Y   VAD LD    + + R +R+ C    G+Y+KDLS +  +LS
Sbjct: 121 VSQWYELVVFTASMEIYGSAVADKLDNSRSILKRRYYRQHCTLELGSYIKDLSVVHSDLS 180

Query: 206 KVIIVDNSPASYIFHPENAVPVQSWFDDMTDTELLDLIPFFEGLSREDDVYSMLHR 261
            ++I+DNSP +Y  HP+NA+P++SWF D +DT LL+L+P  + L    DV S+L R
Sbjct: 181 SIVILDNSPGAYRSHPDNAIPIKSWFSDPSDTALLNLLPMLDALRFTADVRSVLSR 236


>gi|31542547 dullard homolog [Homo sapiens]
          Length = 244

 Score =  147 bits (372), Expect = 7e-36
 Identities = 77/176 (43%), Positives = 113/176 (64%), Gaps = 9/176 (5%)

Query: 95  KKCVVIDLDETLVHS--------SFKPISNADFIVPVEIDGTIHQVYVLKRPHVDEFLQR 146
           +K +V+DLDETL+HS        + +P +  DFI+ V ID    + +V KRPHVD FL+ 
Sbjct: 61  RKILVLDLDETLIHSHHDGVLRPTVRPGTPPDFILKVVIDKHPVRFFVHKRPHVDFFLEV 120

Query: 147 MGQLFECVLFTASLAKYADPVADLLDRW-GVFRARLFRESCVFHRGNYVKDLSRLGRELS 205
           + Q +E V+FTAS+  Y   VAD LD    + + R +R+ C    G+Y+KDLS +  +LS
Sbjct: 121 VSQWYELVVFTASMEIYGSAVADKLDNSRSILKRRYYRQHCTLELGSYIKDLSVVHSDLS 180

Query: 206 KVIIVDNSPASYIFHPENAVPVQSWFDDMTDTELLDLIPFFEGLSREDDVYSMLHR 261
            ++I+DNSP +Y  HP+NA+P++SWF D +DT LL+L+P  + L    DV S+L R
Sbjct: 181 SIVILDNSPGAYRSHPDNAIPIKSWFSDPSDTALLNLLPMLDALRFTADVRSVLSR 236


>gi|48526509 translocase of inner mitochondrial membrane 50 homolog
           [Homo sapiens]
          Length = 456

 Score = 82.8 bits (203), Expect = 3e-16
 Identities = 59/212 (27%), Positives = 100/212 (47%), Gaps = 34/212 (16%)

Query: 50  FRDYNVEAPPPSSPSVLPPLVEENGGLQKPPAKYLLPEVTVLDYGKKCVVIDLDETLVHS 109
           F+DY      P+SP +LP  ++E          Y  P  T+        V++L   L+H 
Sbjct: 222 FKDYRQMIIEPTSPCLLPDPLQE---------PYYQPPYTL--------VLELTGVLLHP 264

Query: 110 SFKPISNADFIVPVEIDGTIHQVYVLKRPHVDEFLQRMGQLFECVLFTASLAKYADPVAD 169
            +   +   F                KRP ++   Q++  L+E V+FT+     A P+ D
Sbjct: 265 EWSLATGWRF---------------KKRPGIETLFQQLAPLYEIVIFTSETGMTAFPLID 309

Query: 170 LLDRWGVFRARLFRESCVFHRGNYVKDLSRLGRELSKVIIVDNSPASYIFHPENAVPVQS 229
            +D  G    RLFR++  +  G++VKD+S L R+ ++V++VD    ++   P N V ++ 
Sbjct: 310 SVDPHGFISYRLFRDATRYMDGHHVKDISCLNRDPARVVVVDCKKEAFRLQPYNGVALRP 369

Query: 230 WFDDMTDTELLDLIPFFE--GLSREDDVYSML 259
           W  +  D  LLDL  F +   L+  +DV ++L
Sbjct: 370 WDGNSDDRVLLDLSAFLKTIALNGVEDVRTVL 401


>gi|67188550 CTD (carboxy-terminal domain, RNA polymerase II,
           polypeptide A) phosphatase, subunit 1 isoform FCP1b
           [Homo sapiens]
          Length = 867

 Score = 45.4 bits (106), Expect = 5e-05
 Identities = 40/143 (27%), Positives = 74/143 (51%), Gaps = 11/143 (7%)

Query: 95  KKCVVIDLDETLVHSS---FKPISNADFIVPVEIDGTIHQVYVLKRPHVDEFLQRMGQLF 151
           K  +++DLD+TL+H++    + +SN   I   ++      ++   RPH  +FL+++ +L+
Sbjct: 182 KLVLMVDLDQTLIHTTEQHCQQMSNKG-IFHFQLGRGEPMLHTRLRPHCKDFLEKIAKLY 240

Query: 152 ECVLFTASLAKYADPVADLLD-RWGVFRAR-LFRESCV--FHRGNYVKDLSRLGRELSKV 207
           E  +FT     YA  +A  LD    +F  R L R+ C+  F +   +++L   G   S V
Sbjct: 241 ELHVFTFGSRLYAHTIAGFLDPEKKLFSHRILSRDECIDPFSKTGNLRNLFPCGD--SMV 298

Query: 208 IIVDNSPASYIFHPENAVPVQSW 230
            I+D+    + F P N + V+ +
Sbjct: 299 CIIDDREDVWKFAP-NLITVKKY 320


>gi|67188445 CTD (carboxy-terminal domain, RNA polymerase II,
           polypeptide A) phosphatase, subunit 1 isoform FCP1a
           [Homo sapiens]
          Length = 961

 Score = 45.4 bits (106), Expect = 5e-05
 Identities = 40/143 (27%), Positives = 74/143 (51%), Gaps = 11/143 (7%)

Query: 95  KKCVVIDLDETLVHSS---FKPISNADFIVPVEIDGTIHQVYVLKRPHVDEFLQRMGQLF 151
           K  +++DLD+TL+H++    + +SN   I   ++      ++   RPH  +FL+++ +L+
Sbjct: 182 KLVLMVDLDQTLIHTTEQHCQQMSNKG-IFHFQLGRGEPMLHTRLRPHCKDFLEKIAKLY 240

Query: 152 ECVLFTASLAKYADPVADLLD-RWGVFRAR-LFRESCV--FHRGNYVKDLSRLGRELSKV 207
           E  +FT     YA  +A  LD    +F  R L R+ C+  F +   +++L   G   S V
Sbjct: 241 ELHVFTFGSRLYAHTIAGFLDPEKKLFSHRILSRDECIDPFSKTGNLRNLFPCGD--SMV 298

Query: 208 IIVDNSPASYIFHPENAVPVQSW 230
            I+D+    + F P N + V+ +
Sbjct: 299 CIIDDREDVWKFAP-NLITVKKY 320


>gi|95089461 discs large homolog 5 [Homo sapiens]
          Length = 1919

 Score = 29.6 bits (65), Expect = 2.8
 Identities = 12/23 (52%), Positives = 16/23 (69%)

Query: 60   PSSPSVLPPLVEENGGLQKPPAK 82
            P  PSV+ PL+E++ G   PPAK
Sbjct: 1461 PEHPSVIDPLMEQDEGPSTPPAK 1483


>gi|46575934 KIAA1680 protein isoform 2 [Homo sapiens]
          Length = 677

 Score = 29.3 bits (64), Expect = 3.7
 Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 6/66 (9%)

Query: 60  PSSPSVLPPL--VEENGGLQKPPAKYLLPEVTVLDYGKKCVVIDLDETLVHSSFKPISNA 117
           P+SPS   PL  VEENGG+   P + +L + T +    K +++ +   L  S+    +++
Sbjct: 598 PNSPSADWPLQGVEENGGIDSLPFRLMLQDCTAV----KTLLLKMKRVLQESADMSPASS 653

Query: 118 DFIVPV 123
              +PV
Sbjct: 654 TTSLPV 659


>gi|222831647 KIAA1680 protein isoform 1 [Homo sapiens]
          Length = 900

 Score = 29.3 bits (64), Expect = 3.7
 Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 6/66 (9%)

Query: 60  PSSPSVLPPL--VEENGGLQKPPAKYLLPEVTVLDYGKKCVVIDLDETLVHSSFKPISNA 117
           P+SPS   PL  VEENGG+   P + +L + T +    K +++ +   L  S+    +++
Sbjct: 598 PNSPSADWPLQGVEENGGIDSLPFRLMLQDCTAV----KTLLLKMKRVLQESADMSPASS 653

Query: 118 DFIVPV 123
              +PV
Sbjct: 654 TTSLPV 659


>gi|7669518 neuregulin 1 isoform SMDF [Homo sapiens]
          Length = 296

 Score = 28.9 bits (63), Expect = 4.8
 Identities = 15/49 (30%), Positives = 23/49 (46%)

Query: 1  MDGPAIITQVTNPKEDEGRLPGAGEKASQCNVSLKKQRSRSILSSFFCC 49
          +DG      +  P+ ++GR PG    A  C   L+ +R R  L+S   C
Sbjct: 29 LDGLPAAEDMPEPQTEDGRTPGLVGLAVPCCACLEAERLRGCLNSEKIC 77


>gi|24797106 UBX domain containing 8 [Homo sapiens]
          Length = 445

 Score = 28.5 bits (62), Expect = 6.3
 Identities = 14/49 (28%), Positives = 26/49 (53%)

Query: 161 AKYADPVADLLDRWGVFRARLFRESCVFHRGNYVKDLSRLGRELSKVII 209
           ++  DPV D++     F  +  R   VF++G Y + L+   REL  +++
Sbjct: 127 SRVTDPVGDIVSFMHSFEEKYGRAHPVFYQGTYSQALNDAKRELRFLLV 175


>gi|109689723 abl interactor 2 [Homo sapiens]
          Length = 475

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 13/40 (32%), Positives = 19/40 (47%)

Query: 54  NVEAPPPSSPSVLPPLVEENGGLQKPPAKYLLPEVTVLDY 93
           N+   PP  P V  P+ +E+     PP  Y   E  V++Y
Sbjct: 359 NISDTPPPPPPVEEPVFDESPPPPPPPEDYEEEEAAVVEY 398


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.139    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,369,260
Number of Sequences: 37866
Number of extensions: 533644
Number of successful extensions: 1772
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1743
Number of HSP's gapped (non-prelim): 19
length of query: 265
length of database: 18,247,518
effective HSP length: 100
effective length of query: 165
effective length of database: 14,460,918
effective search space: 2386051470
effective search space used: 2386051470
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.