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Search of human proteins with 56243533
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|56243533 stromal cell-derived factor 2-like 1 precursor
[Homo sapiens]
(221 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|56243533 stromal cell-derived factor 2-like 1 precursor [Homo... 465 e-131
gi|14141195 stromal cell-derived factor 2 precursor [Homo sapiens] 276 1e-74
gi|32455271 protein-O-mannosyltransferase 2 [Homo sapiens] 61 9e-10
gi|209870084 protein-O-mannosyltransferase 1 isoform d [Homo sap... 54 1e-07
gi|209870082 protein-O-mannosyltransferase 1 isoform b [Homo sap... 54 1e-07
gi|116517315 protein-O-mannosyltransferase 1 isoform c [Homo sap... 54 1e-07
gi|116517317 protein-O-mannosyltransferase 1 isoform b [Homo sap... 54 1e-07
gi|116517319 protein-O-mannosyltransferase 1 isoform a [Homo sap... 54 1e-07
gi|239757132 PREDICTED: hypothetical protein [Homo sapiens] 32 0.43
gi|239751635 PREDICTED: hypothetical protein XP_002347941 [Homo ... 32 0.43
gi|239746147 PREDICTED: hypothetical protein XP_002344287 [Homo ... 32 0.43
gi|112799847 cardiac muscle ryanodine receptor [Homo sapiens] 31 0.96
gi|7662414 inositol polyphosphate-5-phosphatase F [Homo sapiens] 30 1.6
gi|47777330 hypothetical protein LOC115939 [Homo sapiens] 29 2.8
gi|57864582 hornerin [Homo sapiens] 29 3.6
gi|4505211 matrix metalloproteinase 15 preproprotein [Homo sapiens] 29 3.6
gi|239757512 PREDICTED: chromosome 20 open reading frame 123 [Ho... 28 4.7
gi|239752028 PREDICTED: hypothetical protein LOC128506 [Homo sap... 28 4.7
gi|239746512 PREDICTED: hypothetical protein LOC128506 [Homo sap... 28 4.7
gi|225637556 hypothetical protein LOC128506 [Homo sapiens] 28 4.7
gi|15055535 bactericidal/permeability-increasing protein-like 1 ... 28 6.2
gi|28872814 semaphorin 4G [Homo sapiens] 28 8.1
>gi|56243533 stromal cell-derived factor 2-like 1 precursor [Homo
sapiens]
Length = 221
Score = 465 bits (1197), Expect = e-131
Identities = 221/221 (100%), Positives = 221/221 (100%)
Query: 1 MWSAGRGGAAWPVLLGLLLALLVPGGGAAKTGAELVTCGSVLKLLNTHHRVRLHSHDIKY 60
MWSAGRGGAAWPVLLGLLLALLVPGGGAAKTGAELVTCGSVLKLLNTHHRVRLHSHDIKY
Sbjct: 1 MWSAGRGGAAWPVLLGLLLALLVPGGGAAKTGAELVTCGSVLKLLNTHHRVRLHSHDIKY 60
Query: 61 GSGSGQQSVTGVEASDDANSYWRIRGGSEGGCPRGSPVRCGQAVRLTHVLTGKNLHTHHF 120
GSGSGQQSVTGVEASDDANSYWRIRGGSEGGCPRGSPVRCGQAVRLTHVLTGKNLHTHHF
Sbjct: 61 GSGSGQQSVTGVEASDDANSYWRIRGGSEGGCPRGSPVRCGQAVRLTHVLTGKNLHTHHF 120
Query: 121 PSPLSNNQEVSAFGEDGEGDDLDLWTVRCSGQHWEREAAVRFQHVGTSVFLSVTGEQYGS 180
PSPLSNNQEVSAFGEDGEGDDLDLWTVRCSGQHWEREAAVRFQHVGTSVFLSVTGEQYGS
Sbjct: 121 PSPLSNNQEVSAFGEDGEGDDLDLWTVRCSGQHWEREAAVRFQHVGTSVFLSVTGEQYGS 180
Query: 181 PIRGQHEVHGMPSANTHNTWKAMEGIFIKPSVEPSAGHDEL 221
PIRGQHEVHGMPSANTHNTWKAMEGIFIKPSVEPSAGHDEL
Sbjct: 181 PIRGQHEVHGMPSANTHNTWKAMEGIFIKPSVEPSAGHDEL 221
>gi|14141195 stromal cell-derived factor 2 precursor [Homo sapiens]
Length = 211
Score = 276 bits (706), Expect = 1e-74
Identities = 135/209 (64%), Positives = 161/209 (77%), Gaps = 5/209 (2%)
Query: 18 LLALLVPGGGAAKTGAE---LVTCGSVLKLLNTHHRVRLHSHDIKYGSGSGQQSVTGVEA 74
++ LL+ GG + GA +VTCGSV+KLLNT H VRLHSHD++YGSGSGQQSVTGV +
Sbjct: 3 VVPLLLLGGLWSAVGASSLGVVTCGSVVKLLNTRHNVRLHSHDVRYGSGSGQQSVTGVTS 62
Query: 75 SDDANSYWRIRGGSEGGCPRGSPVRCGQAVRLTHVLTGKNLHTHHFPSPLSNNQEVSAFG 134
DD+NSYWRIRG S C RG+P++CGQ +RLTHV TG+NLH+HHF SPLS NQEVSAFG
Sbjct: 63 VDDSNSYWRIRGKSATVCERGTPIKCGQPIRLTHVNTGRNLHSHHFTSPLSGNQEVSAFG 122
Query: 135 EDGEGDDLDLWTVRCSGQHWEREAAVRFQHVGTSVFLSVTGEQYGSPIRGQHEVHGMPSA 194
E+GEGD LD WTV C+G +W R+ VRF+H T V LSVTGEQYG PI GQ EVHGM
Sbjct: 123 EEGEGDYLDDWTVLCNGPYWVRDGEVRFKHSSTEVLLSVTGEQYGRPISGQKEVHGMAQP 182
Query: 195 NTHNTWKAMEGIFIKPS--VEPSAGHDEL 221
+ +N WKAMEGIF+KPS ++ A H EL
Sbjct: 183 SQNNYWKAMEGIFMKPSELLKAEAHHAEL 211
>gi|32455271 protein-O-mannosyltransferase 2 [Homo sapiens]
Length = 750
Score = 60.8 bits (146), Expect = 9e-10
Identities = 46/157 (29%), Positives = 74/157 (47%), Gaps = 15/157 (9%)
Query: 34 ELVTCGSVLKLLNTHHRVR-LHSHDIKY--GSGSGQQSVTGVEASDDANSYWRIRGGSEG 90
E + GSV+ + N + LHSH Y G G+ QQ VT D N+ W I+ +
Sbjct: 335 EHLAYGSVITVKNLRMAIGYLHSHRHLYPEGIGARQQQVT-TYLHKDYNNLWIIKKHNTN 393
Query: 91 GCPRGSP-----VRCGQAVRLTHVLTGKNLHTHHFPSPLS-NNQEVSAFGEDGEGDDLDL 144
P VR G +RL H T +NLH+H+ +P++ + +V+ +G +G GD D
Sbjct: 394 SDPLDPSFPVEFVRHGDIIRLEHKETSRNLHSHYHEAPMTRKHYQVTGYGINGTGDSNDF 453
Query: 145 WTVRCSGQHWER-----EAAVRFQHVGTSVFLSVTGE 176
W + + + + +RF H+ T L +G+
Sbjct: 454 WRIEVVNRKFGNRIKVLRSRIRFIHLVTGCVLGSSGK 490
>gi|209870084 protein-O-mannosyltransferase 1 isoform d [Homo
sapiens]
Length = 608
Score = 53.5 bits (127), Expect = 1e-07
Identities = 45/148 (30%), Positives = 62/148 (41%), Gaps = 33/148 (22%)
Query: 53 LHSHDIKY------GSGSGQQSVTGVEASDDANSYWRIRGGSEGGCPRGSP---VRCGQA 103
LHSH Y G GS Q D N++W ++ SP VR G
Sbjct: 202 LHSHQDTYPMIYENGRGSSHQQQVTCYPFKDVNNWWIVKDPRRHQLVVSSPPRPVRHGDM 261
Query: 104 VRLTHVLTGKNLHTHHFPSPLS-NNQEVSAFGE---------------DGEGDDLDLWTV 147
V+L H +T ++L+TH +PLS ++QEVS + + G D D+W
Sbjct: 262 VQLVHGMTTRSLNTHDVAAPLSPHSQEVSCYIDYNISMPAQNLWRLEIVNRGSDTDVWKT 321
Query: 148 RCSGQHWEREAAVRFQHVGTSVFLSVTG 175
S VRF HV TS L ++G
Sbjct: 322 ILS--------EVRFVHVNTSAVLKLSG 341
>gi|209870082 protein-O-mannosyltransferase 1 isoform b [Homo
sapiens]
Length = 725
Score = 53.5 bits (127), Expect = 1e-07
Identities = 45/148 (30%), Positives = 62/148 (41%), Gaps = 33/148 (22%)
Query: 53 LHSHDIKY------GSGSGQQSVTGVEASDDANSYWRIRGGSEGGCPRGSP---VRCGQA 103
LHSH Y G GS Q D N++W ++ SP VR G
Sbjct: 319 LHSHQDTYPMIYENGRGSSHQQQVTCYPFKDVNNWWIVKDPRRHQLVVSSPPRPVRHGDM 378
Query: 104 VRLTHVLTGKNLHTHHFPSPLS-NNQEVSAFGE---------------DGEGDDLDLWTV 147
V+L H +T ++L+TH +PLS ++QEVS + + G D D+W
Sbjct: 379 VQLVHGMTTRSLNTHDVAAPLSPHSQEVSCYIDYNISMPAQNLWRLEIVNRGSDTDVWKT 438
Query: 148 RCSGQHWEREAAVRFQHVGTSVFLSVTG 175
S VRF HV TS L ++G
Sbjct: 439 ILS--------EVRFVHVNTSAVLKLSG 458
>gi|116517315 protein-O-mannosyltransferase 1 isoform c [Homo
sapiens]
Length = 671
Score = 53.5 bits (127), Expect = 1e-07
Identities = 45/148 (30%), Positives = 62/148 (41%), Gaps = 33/148 (22%)
Query: 53 LHSHDIKY------GSGSGQQSVTGVEASDDANSYWRIRGGSEGGCPRGSP---VRCGQA 103
LHSH Y G GS Q D N++W ++ SP VR G
Sbjct: 265 LHSHQDTYPMIYENGRGSSHQQQVTCYPFKDVNNWWIVKDPRRHQLVVSSPPRPVRHGDM 324
Query: 104 VRLTHVLTGKNLHTHHFPSPLS-NNQEVSAFGE---------------DGEGDDLDLWTV 147
V+L H +T ++L+TH +PLS ++QEVS + + G D D+W
Sbjct: 325 VQLVHGMTTRSLNTHDVAAPLSPHSQEVSCYIDYNISMPAQNLWRLEIVNRGSDTDVWKT 384
Query: 148 RCSGQHWEREAAVRFQHVGTSVFLSVTG 175
S VRF HV TS L ++G
Sbjct: 385 ILS--------EVRFVHVNTSAVLKLSG 404
>gi|116517317 protein-O-mannosyltransferase 1 isoform b [Homo
sapiens]
Length = 725
Score = 53.5 bits (127), Expect = 1e-07
Identities = 45/148 (30%), Positives = 62/148 (41%), Gaps = 33/148 (22%)
Query: 53 LHSHDIKY------GSGSGQQSVTGVEASDDANSYWRIRGGSEGGCPRGSP---VRCGQA 103
LHSH Y G GS Q D N++W ++ SP VR G
Sbjct: 319 LHSHQDTYPMIYENGRGSSHQQQVTCYPFKDVNNWWIVKDPRRHQLVVSSPPRPVRHGDM 378
Query: 104 VRLTHVLTGKNLHTHHFPSPLS-NNQEVSAFGE---------------DGEGDDLDLWTV 147
V+L H +T ++L+TH +PLS ++QEVS + + G D D+W
Sbjct: 379 VQLVHGMTTRSLNTHDVAAPLSPHSQEVSCYIDYNISMPAQNLWRLEIVNRGSDTDVWKT 438
Query: 148 RCSGQHWEREAAVRFQHVGTSVFLSVTG 175
S VRF HV TS L ++G
Sbjct: 439 ILS--------EVRFVHVNTSAVLKLSG 458
>gi|116517319 protein-O-mannosyltransferase 1 isoform a [Homo
sapiens]
Length = 747
Score = 53.5 bits (127), Expect = 1e-07
Identities = 45/148 (30%), Positives = 62/148 (41%), Gaps = 33/148 (22%)
Query: 53 LHSHDIKY------GSGSGQQSVTGVEASDDANSYWRIRGGSEGGCPRGSP---VRCGQA 103
LHSH Y G GS Q D N++W ++ SP VR G
Sbjct: 341 LHSHQDTYPMIYENGRGSSHQQQVTCYPFKDVNNWWIVKDPRRHQLVVSSPPRPVRHGDM 400
Query: 104 VRLTHVLTGKNLHTHHFPSPLS-NNQEVSAFGE---------------DGEGDDLDLWTV 147
V+L H +T ++L+TH +PLS ++QEVS + + G D D+W
Sbjct: 401 VQLVHGMTTRSLNTHDVAAPLSPHSQEVSCYIDYNISMPAQNLWRLEIVNRGSDTDVWKT 460
Query: 148 RCSGQHWEREAAVRFQHVGTSVFLSVTG 175
S VRF HV TS L ++G
Sbjct: 461 ILS--------EVRFVHVNTSAVLKLSG 480
>gi|239757132 PREDICTED: hypothetical protein [Homo sapiens]
Length = 583
Score = 32.0 bits (71), Expect = 0.43
Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 1 MWSAGRGGAAWPVLLGLLLALLVPGGGAAKTGAELVTCGSVLKLLNTHHRVRLHS 55
+W GRGG + LGLL A A LV C VL+LL +RLH+
Sbjct: 26 LWGRGRGGLHLALGLGLLAAAF-----AELRLQPLVLCSQVLQLLLQRRALRLHA 75
>gi|239751635 PREDICTED: hypothetical protein XP_002347941 [Homo
sapiens]
Length = 241
Score = 32.0 bits (71), Expect = 0.43
Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 1 MWSAGRGGAAWPVLLGLLLALLVPGGGAAKTGAELVTCGSVLKLLNTHHRVRLHS 55
+W GRGG + LGLL A A LV C VL+LL +RLH+
Sbjct: 26 LWGRGRGGLHLALGLGLLAAAF-----AELRLQPLVLCSQVLQLLLQRRALRLHA 75
>gi|239746147 PREDICTED: hypothetical protein XP_002344287 [Homo
sapiens]
Length = 241
Score = 32.0 bits (71), Expect = 0.43
Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 1 MWSAGRGGAAWPVLLGLLLALLVPGGGAAKTGAELVTCGSVLKLLNTHHRVRLHS 55
+W GRGG + LGLL A A LV C VL+LL +RLH+
Sbjct: 26 LWGRGRGGLHLALGLGLLAAAF-----AELRLQPLVLCSQVLQLLLQRRALRLHA 75
>gi|112799847 cardiac muscle ryanodine receptor [Homo sapiens]
Length = 4967
Score = 30.8 bits (68), Expect = 0.96
Identities = 27/78 (34%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
Query: 39 GSVLKLLNTHHRVRLHSHDIKYGSGSGQQ-SVTGVEASDDANSYWRIRGGSEGGCPRGSP 97
G VL+LL+ H L ++G + G S A S WR+ GS
Sbjct: 231 GDVLRLLHGHMDECLTVPSGEHGEEQRRTVHYEGGAVSVHARSLWRLETLRVAWS--GSH 288
Query: 98 VRCGQAVRLTHVLTGKNL 115
+R GQ RL HV TGK L
Sbjct: 289 IRWGQPFRLRHVTTGKYL 306
>gi|7662414 inositol polyphosphate-5-phosphatase F [Homo sapiens]
Length = 1132
Score = 30.0 bits (66), Expect = 1.6
Identities = 35/163 (21%), Positives = 64/163 (39%), Gaps = 10/163 (6%)
Query: 63 GSGQQSVTGVEASDDANSYWRIRGGSEGGCPRGSPVRCGQAVRLTHVLTG----KNLHTH 118
GS QS++ ++S A S + GS G + SP++ + H+LTG +++ H
Sbjct: 902 GSRSQSLSSTDSSVHAPSEITVAHGSGLGKGQESPLKKSPSAGDVHILTGFAKPMDIYCH 961
Query: 119 HFPSPLSNN----QEVSAFGEDGEGDDLDLWTVRCSGQHWEREAAVRFQHVGTSVFLSVT 174
F N E + + + + + E + V LS T
Sbjct: 962 RFVQDAQNKVTHLSETRSVSQQASQERNQMTNQVSNETQSESTEQTPSRPSQLDVSLSAT 1021
Query: 175 GEQYGSPIRGQHEVHGMPSANTHNTWKAME-GIFIKPSVEPSA 216
G Q+ S + H V + + ++ +E G+ + PS S+
Sbjct: 1022 GPQFLS-VEPAHSVASQKTPTSASSMLELETGLHVTPSPSESS 1063
>gi|47777330 hypothetical protein LOC115939 [Homo sapiens]
Length = 312
Score = 29.3 bits (64), Expect = 2.8
Identities = 33/109 (30%), Positives = 43/109 (39%), Gaps = 25/109 (22%)
Query: 87 GSEGGCPRGSPVRCGQAVRLTHVLTGKNLHTHHFPSPLSNNQEVSAFGEDGEGD-----D 141
G+EGG PR P R +A G L P +A GE G G
Sbjct: 11 GAEGGRPRHLPTRSLEAFAEE---VGAALQASVEPG--------AADGEGGPGPAALPCT 59
Query: 142 LDLWTV------RCSGQHWEREAAVRFQHVG---TSVFLSVTGEQYGSP 181
L +W + RC+G+ R VR +G + LS G+QY SP
Sbjct: 60 LAMWELGHCDPRRCTGRKLARLGLVRCLRLGHRFGGLVLSPVGKQYASP 108
>gi|57864582 hornerin [Homo sapiens]
Length = 2850
Score = 28.9 bits (63), Expect = 3.6
Identities = 42/152 (27%), Positives = 55/152 (36%), Gaps = 27/152 (17%)
Query: 58 IKYGSGSGQQSVTGVEASDDANSYWRIRGGSEGGCPRGSPVRCGQAVRLTHVLTGKNLHT 117
+++GSGSG S G S + SY RG E G G GQ + +G + H
Sbjct: 310 VRHGSGSGHSSSHGQHGSGSSYSY--SRGHYESG--SGQTSGFGQHESGSGQSSGYSKHG 365
Query: 118 HHFPSPLSNNQEVSAFGEDGEGDDLDLWTVRCSGQHW--EREAAVRFQHVGTSVFLSVTG 175
S Q S G+ SGQH R+++ QH S S G
Sbjct: 366 SGSGHSSSQGQHGSTSGQ-----------ASSSGQHGSSSRQSSSYGQHESASRHSSGRG 414
Query: 176 EQYGSPIRGQHEVHGM--------PSANTHNT 199
+ S GQ HG PS+ H T
Sbjct: 415 QH--SSGSGQSPGHGQRGSGSGQSPSSGQHGT 444
>gi|4505211 matrix metalloproteinase 15 preproprotein [Homo sapiens]
Length = 669
Score = 28.9 bits (63), Expect = 3.6
Identities = 49/177 (27%), Positives = 68/177 (38%), Gaps = 32/177 (18%)
Query: 6 RGGAAWPVLLGLLLALL-VPGGGAAKTGAELVTCGSVLKLLN-----THHRVRLHSHDIK 59
R AA P LL LLL LL G G A AE V + L+L + H + S I
Sbjct: 21 REEAARPRLLPLLLVLLGCLGLGVAAEDAE-VHAENWLRLYGYLPQPSRHMSTMRSAQIL 79
Query: 60 YGSGSGQQSVTGVEAS---DDANSYWRIRGGSEGGCPR-GSPVRCGQAV-------RLTH 108
+ + Q G+ + D+ W R PR G P + G V R +
Sbjct: 80 ASALAEMQRFYGIPVTGVLDEETKEWMKR-------PRCGVPDQFGVRVKANLRRRRKRY 132
Query: 109 VLTGKNLHTHHFPSPLSNNQEVSAFGEDGEGDDLDLWTVRCSGQHWEREAAVRFQHV 165
LTG+ + HH + N E + E VR + + WE+ + FQ V
Sbjct: 133 ALTGRKWNNHHLTFSIQNYTEKLGWYHSME-------AVRRAFRVWEQATPLVFQEV 182
>gi|239757512 PREDICTED: chromosome 20 open reading frame 123 [Homo
sapiens]
Length = 560
Score = 28.5 bits (62), Expect = 4.7
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 27 GAAKTGAELVTCGSVLKLLNTHHRVRLHSHDIKYGSGSGQQSVTGVEASDDANSYW 82
GAA VT GS+ LLNT H++ S + +G + +T EA D+ ++++
Sbjct: 137 GAAGQVLRCVTEGSLESLLNTTHQLHAASRALGPTGQAGSRGLT-FEAQDNGSAFY 191
>gi|239752028 PREDICTED: hypothetical protein LOC128506 [Homo
sapiens]
Length = 560
Score = 28.5 bits (62), Expect = 4.7
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 27 GAAKTGAELVTCGSVLKLLNTHHRVRLHSHDIKYGSGSGQQSVTGVEASDDANSYW 82
GAA VT GS+ LLNT H++ S + +G + +T EA D+ ++++
Sbjct: 137 GAAGQVLRCVTEGSLESLLNTTHQLHAASRALGPTGQAGSRGLT-FEAQDNGSAFY 191
>gi|239746512 PREDICTED: hypothetical protein LOC128506 [Homo
sapiens]
Length = 560
Score = 28.5 bits (62), Expect = 4.7
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 27 GAAKTGAELVTCGSVLKLLNTHHRVRLHSHDIKYGSGSGQQSVTGVEASDDANSYW 82
GAA VT GS+ LLNT H++ S + +G + +T EA D+ ++++
Sbjct: 137 GAAGQVLRCVTEGSLESLLNTTHQLHAASRALGPTGQAGSRGLT-FEAQDNGSAFY 191
>gi|225637556 hypothetical protein LOC128506 [Homo sapiens]
Length = 566
Score = 28.5 bits (62), Expect = 4.7
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 27 GAAKTGAELVTCGSVLKLLNTHHRVRLHSHDIKYGSGSGQQSVTGVEASDDANSYW 82
GAA VT GS+ LLNT H++ S + +G + +T EA D+ ++++
Sbjct: 143 GAAGQVLRCVTEGSLESLLNTTHQLHAASRALGPTGQAGSRGLT-FEAQDNGSAFY 197
>gi|15055535 bactericidal/permeability-increasing protein-like 1
[Homo sapiens]
Length = 458
Score = 28.1 bits (61), Expect = 6.2
Identities = 14/23 (60%), Positives = 16/23 (69%)
Query: 10 AWPVLLGLLLALLVPGGGAAKTG 32
AW LGLLLALL+P GA+ G
Sbjct: 2 AWASRLGLLLALLLPVVGASTPG 24
>gi|28872814 semaphorin 4G [Homo sapiens]
Length = 843
Score = 27.7 bits (60), Expect = 8.1
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 8 GAAWPVLLGLLLALLVPGGGAAKTGAEL 35
G WP+LL +L A VPG + EL
Sbjct: 3 GRLWPLLLSILTATAVPGPSLRRPSREL 30
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.134 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,001,866
Number of Sequences: 37866
Number of extensions: 482716
Number of successful extensions: 1288
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1228
Number of HSP's gapped (non-prelim): 61
length of query: 221
length of database: 18,247,518
effective HSP length: 98
effective length of query: 123
effective length of database: 14,536,650
effective search space: 1788007950
effective search space used: 1788007950
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.