Guide to the Human Genome
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Name: POMT1 Sequence: fasta or formatted (725aa) NCBI GI: 116517317
Description:

protein-O-mannosyltransferase 1 isoform b

Referenced in:

Protein Glycosylation

Other entries for this name:
alt prot [671aa] protein-O-mannosyltransferase 1 isoform c
alt prot [747aa] protein-O-mannosyltransferase 1 isoform a
alt mRNA [725aa] protein-O-mannosyltransferase 1 isoform b
alt prot [608aa] protein-O-mannosyltransferase 1 isoform d
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0         51           2
 C cysteine            1.7         12           1
 D aspartate           3.6         26           2
 E glutamate           3.3         24           2
 F phenylalanine       4.4         32           2
 G glycine             5.8         42           2
 H histidine           4.4         32           1
 I isoleucine          4.1         30           1
 K lysine              2.3         17           1
 L leucine            14.6        106           3
 M methionine          2.3         17           1
 N asparagine          3.3         24           2
 P proline             4.4         32           2
 Q glutamine           4.1         30           3
 R arginine            5.7         41           4
 S serine              8.6         62           3
 T threonine           3.6         26           2
 V valine              9.0         65           3
 W tryptophan          3.6         26           2
 Y tyrosine            4.1         30           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   protein-O-mannosyltransferase 1 isoform b 
POMT1                 1.000   protein-O-mannosyltransferase 1 isoform b 
POMT1                 0.991   protein-O-mannosyltransferase 1 isoform a 
POMT1                 0.926   protein-O-mannosyltransferase 1 isoform c 
POMT1                 0.836   protein-O-mannosyltransferase 1 isoform d 
POMT2                 0.226   protein-O-mannosyltransferase 2 
SDF2L1                0.020   stromal cell-derived factor 2-like 1 precursor [Homo...
SDF2                  0.015   stromal cell-derived factor 2 precursor 
TSPAN13               0.005   tetraspan NET-6 
GPR141                0.004   G protein-coupled receptor 141 
NBEAL1                0.004   neurobeachin-like 1 isoform 3 
OR51V1                0.004   olfactory receptor, family 51, subfamily V, member ...
DUOX2                 0.003   dual oxidase 2 precursor 
ADCY6                 0.003   adenylate cyclase 6 isoform b 
RNF145                0.003   ring finger protein 145 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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