Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 55956777
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|55956777 sterol carrier protein 2 isoform 1 precursor [Homo
sapiens]
(143 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|19923233 sterol carrier protein 2 isoform 1 proprotein [Homo ... 286 4e-78
gi|55956777 sterol carrier protein 2 isoform 1 precursor [Homo s... 286 4e-78
gi|55956779 sterol carrier protein 2 isoform 2 precursor [Homo s... 275 7e-75
gi|4504505 hydroxysteroid (17-beta) dehydrogenase 4 [Homo sapiens] 89 2e-18
gi|55956781 sterol carrier protein 2 isoform 3 precursor [Homo s... 85 2e-17
gi|30425406 hypothetical protein LOC140856 [Homo sapiens] 78 2e-15
gi|40254986 hydroxysteroid dehydrogenase like 2 [Homo sapiens] 67 5e-12
gi|20149563 stomatin (EPB72)-like 1 [Homo sapiens] 54 6e-08
gi|22208850 Golgi coiled-coil protein 1 [Homo sapiens] 33 0.062
gi|10440566 leucine zipper, putative tumor suppressor 1 [Homo sa... 29 1.5
gi|239751284 PREDICTED: hypothetical protein XP_002347797 [Homo ... 28 2.6
gi|93352554 GPR158-like 1 [Homo sapiens] 28 2.6
gi|45331215 leucine zipper, putative tumor suppressor 2 [Homo sa... 28 3.4
gi|46575934 KIAA1680 protein isoform 2 [Homo sapiens] 27 4.4
gi|222831647 KIAA1680 protein isoform 1 [Homo sapiens] 27 4.4
gi|192455698 glutathione peroxidase 8 [Homo sapiens] 27 5.8
gi|34452709 bromodomain containing 8 isoform 3 [Homo sapiens] 26 9.9
gi|34452707 bromodomain containing 8 isoform 2 [Homo sapiens] 26 9.9
gi|34452705 bromodomain containing 8 isoform 1 [Homo sapiens] 26 9.9
gi|7661950 SH2 domain binding protein 1 [Homo sapiens] 26 9.9
gi|145199237 transcription elongation factor B polypeptide 3 bin... 26 9.9
>gi|19923233 sterol carrier protein 2 isoform 1 proprotein [Homo
sapiens]
Length = 547
Score = 286 bits (732), Expect = 4e-78
Identities = 143/143 (100%), Positives = 143/143 (100%)
Query: 1 MGFPEAASSFRTHQIEAVPTSSASDGFKANLVFKEIEKKLEEEGEQFVKKIGGIFAFKVK 60
MGFPEAASSFRTHQIEAVPTSSASDGFKANLVFKEIEKKLEEEGEQFVKKIGGIFAFKVK
Sbjct: 405 MGFPEAASSFRTHQIEAVPTSSASDGFKANLVFKEIEKKLEEEGEQFVKKIGGIFAFKVK 464
Query: 61 DGPGGKEATWVVDVKNGKGSVLPNSDKKADCTITMADSDFLALMTGKMNPQSAFFQGKLK 120
DGPGGKEATWVVDVKNGKGSVLPNSDKKADCTITMADSDFLALMTGKMNPQSAFFQGKLK
Sbjct: 465 DGPGGKEATWVVDVKNGKGSVLPNSDKKADCTITMADSDFLALMTGKMNPQSAFFQGKLK 524
Query: 121 ITGNMGLAMKLQNLQLQPGNAKL 143
ITGNMGLAMKLQNLQLQPGNAKL
Sbjct: 525 ITGNMGLAMKLQNLQLQPGNAKL 547
>gi|55956777 sterol carrier protein 2 isoform 1 precursor [Homo
sapiens]
Length = 143
Score = 286 bits (732), Expect = 4e-78
Identities = 143/143 (100%), Positives = 143/143 (100%)
Query: 1 MGFPEAASSFRTHQIEAVPTSSASDGFKANLVFKEIEKKLEEEGEQFVKKIGGIFAFKVK 60
MGFPEAASSFRTHQIEAVPTSSASDGFKANLVFKEIEKKLEEEGEQFVKKIGGIFAFKVK
Sbjct: 1 MGFPEAASSFRTHQIEAVPTSSASDGFKANLVFKEIEKKLEEEGEQFVKKIGGIFAFKVK 60
Query: 61 DGPGGKEATWVVDVKNGKGSVLPNSDKKADCTITMADSDFLALMTGKMNPQSAFFQGKLK 120
DGPGGKEATWVVDVKNGKGSVLPNSDKKADCTITMADSDFLALMTGKMNPQSAFFQGKLK
Sbjct: 61 DGPGGKEATWVVDVKNGKGSVLPNSDKKADCTITMADSDFLALMTGKMNPQSAFFQGKLK 120
Query: 121 ITGNMGLAMKLQNLQLQPGNAKL 143
ITGNMGLAMKLQNLQLQPGNAKL
Sbjct: 121 ITGNMGLAMKLQNLQLQPGNAKL 143
>gi|55956779 sterol carrier protein 2 isoform 2 precursor [Homo
sapiens]
Length = 140
Score = 275 bits (704), Expect = 7e-75
Identities = 140/143 (97%), Positives = 140/143 (97%), Gaps = 3/143 (2%)
Query: 1 MGFPEAASSFRTHQIEAVPTSSASDGFKANLVFKEIEKKLEEEGEQFVKKIGGIFAFKVK 60
MGFPEAA RTHQIEAVPTSSASDGFKANLVFKEIEKKLEEEGEQFVKKIGGIFAFKVK
Sbjct: 1 MGFPEAA---RTHQIEAVPTSSASDGFKANLVFKEIEKKLEEEGEQFVKKIGGIFAFKVK 57
Query: 61 DGPGGKEATWVVDVKNGKGSVLPNSDKKADCTITMADSDFLALMTGKMNPQSAFFQGKLK 120
DGPGGKEATWVVDVKNGKGSVLPNSDKKADCTITMADSDFLALMTGKMNPQSAFFQGKLK
Sbjct: 58 DGPGGKEATWVVDVKNGKGSVLPNSDKKADCTITMADSDFLALMTGKMNPQSAFFQGKLK 117
Query: 121 ITGNMGLAMKLQNLQLQPGNAKL 143
ITGNMGLAMKLQNLQLQPGNAKL
Sbjct: 118 ITGNMGLAMKLQNLQLQPGNAKL 140
>gi|4504505 hydroxysteroid (17-beta) dehydrogenase 4 [Homo sapiens]
Length = 736
Score = 88.6 bits (218), Expect = 2e-18
Identities = 45/114 (39%), Positives = 70/114 (61%), Gaps = 2/114 (1%)
Query: 20 TSSASDGFKANLVFKEIEKKLEEEGEQFVKKIGGIFAFKVKDGPGGKEATWVVDVKNGKG 79
T S ++ VF+EI ++L++ G + VKK+ +F + + G G A W +D+K+G G
Sbjct: 615 TPSEGGKLQSTFVFEEIGRRLKDIGPEVVKKVNAVFEWHITKG-GNIGAKWTIDLKSGSG 673
Query: 80 SVLPNSDK-KADCTITMADSDFLALMTGKMNPQSAFFQGKLKITGNMGLAMKLQ 132
V K AD TI ++D DF+ ++ GK++PQ AFF G+LK GN+ L+ KLQ
Sbjct: 674 KVYQGPAKGAADTTIILSDEDFMEVVLGKLDPQKAFFSGRLKARGNIMLSQKLQ 727
>gi|55956781 sterol carrier protein 2 isoform 3 precursor [Homo
sapiens]
Length = 59
Score = 85.1 bits (209), Expect = 2e-17
Identities = 42/42 (100%), Positives = 42/42 (100%)
Query: 1 MGFPEAASSFRTHQIEAVPTSSASDGFKANLVFKEIEKKLEE 42
MGFPEAASSFRTHQIEAVPTSSASDGFKANLVFKEIEKKLEE
Sbjct: 1 MGFPEAASSFRTHQIEAVPTSSASDGFKANLVFKEIEKKLEE 42
>gi|30425406 hypothetical protein LOC140856 [Homo sapiens]
Length = 156
Score = 78.2 bits (191), Expect = 2e-15
Identities = 42/119 (35%), Positives = 65/119 (54%), Gaps = 2/119 (1%)
Query: 17 AVPTSSASDGFKANLVFKEIEKKLEEEGEQFVKKIGGIFAFKVKDGPGGKEATWVVDVKN 76
A+P F++ VF++I + E G Q VKK+ +F + G W +D+KN
Sbjct: 32 AMPHPLELSEFESFPVFQDIRLHIREVGAQLVKKVNAVFQLDITKN-GKTILRWTIDLKN 90
Query: 77 GKGSVLPNSDK-KADCTITMADSDFLALMTGKMNPQSAFFQGKLKITGNMGLAMKLQNL 134
G G + P + AD T+ +S F+ L+ GKMNPQ AF GK K++G + L+ KL+ +
Sbjct: 91 GSGDMYPGPARLPADTVFTIPESVFMELVLGKMNPQKAFLAGKFKVSGKVLLSWKLERV 149
>gi|40254986 hydroxysteroid dehydrogenase like 2 [Homo sapiens]
Length = 418
Score = 67.0 bits (162), Expect = 5e-12
Identities = 45/131 (34%), Positives = 70/131 (53%), Gaps = 13/131 (9%)
Query: 14 QIEAVPTSSASDGFKANLVFKEIEKKLEEEGEQFVKKIGGIFAFKVKDGPGGKEATWVVD 73
Q++ P S A + F+ ++ L ++ VK I+ F++ GG TW +D
Sbjct: 300 QLQPKPRSGAVEE-----TFRIVKDSLSDD---VVKATQAIYLFELSGEDGG---TWFLD 348
Query: 74 VKNGKGSV-LPNSDKKADCTITMADSDFLALMTGKMNPQSAFFQGKLKITGNMGLAMKLQ 132
+K+ G+V +AD ++M DF+ + +GK+ P AF GKLKI GNM LA+KL+
Sbjct: 349 LKSKGGNVGYGEPSDQADVVMSMTTDDFVKMFSGKLKPTMAFMSGKLKIKGNMALAIKLE 408
Query: 133 NLQLQPGNAKL 143
L Q NA+L
Sbjct: 409 KLMNQM-NARL 418
>gi|20149563 stomatin (EPB72)-like 1 [Homo sapiens]
Length = 398
Score = 53.5 bits (127), Expect = 6e-08
Identities = 28/89 (31%), Positives = 50/89 (56%), Gaps = 2/89 (2%)
Query: 45 EQFVKKIGGIFAFKVKDGPGGKEATWVVDVKNGKGSVLPN-SDKKADCTITMADSDFLAL 103
E V ++G + F V P G ++ + +D+ G+G V D D + MA++D AL
Sbjct: 304 EALVSQVGACYQFNVVL-PSGTQSAYFLDLTTGRGRVGHGVPDGIPDVVVEMAEADLRAL 362
Query: 104 MTGKMNPQSAFFQGKLKITGNMGLAMKLQ 132
+ ++ P A+ G+LK+ G++ +AMKL+
Sbjct: 363 LCRELRPLGAYMSGRLKVKGDLAMAMKLE 391
>gi|22208850 Golgi coiled-coil protein 1 [Homo sapiens]
Length = 775
Score = 33.5 bits (75), Expect = 0.062
Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 15 IEAVPTSSASDGFKANLVFKEIE-KKLEEEGEQFVKKIGGIFAFK-VKDGPGGKE 67
+E +P+S A+DG KA ++ + E K+L+EE E++ + + K KDG GKE
Sbjct: 462 LEIMPSSEAADGEKATALYYQQELKQLKEEFERYKMRAQVVLKSKNTKDGNLGKE 516
>gi|10440566 leucine zipper, putative tumor suppressor 1 [Homo
sapiens]
Length = 596
Score = 28.9 bits (63), Expect = 1.5
Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 11/102 (10%)
Query: 34 KEIEKKLEEEGEQFVKKIGGIFAFKVKDGPGGKEATWVVDVKNGKGSVLPNSDKKADCTI 93
+E+E ++E+ + K+ K GP +E W V K+G+ S+L K++ +
Sbjct: 347 QELESLMKEQ-DLLETKLRSYEREKTSFGPALEETQWEVCQKSGEISLLKQQLKESQTEV 405
Query: 94 TMADSDFLALMTGKMNPQSAFFQGKLKITGNMGLAMKLQNLQ 135
S+ L L Q +GKL+ GL ++ Q+L+
Sbjct: 406 NAKASEILGL-----KAQLKDTRGKLE-----GLELRTQDLE 437
>gi|239751284 PREDICTED: hypothetical protein XP_002347797 [Homo
sapiens]
Length = 1674
Score = 28.1 bits (61), Expect = 2.6
Identities = 37/130 (28%), Positives = 50/130 (38%), Gaps = 12/130 (9%)
Query: 2 GFPEAASSFRTHQIEAV--PTSSASDGFKANLVFKEIEKKLEEEGEQFVKKIGGIFAFKV 59
G EAA S T E A KA + E EEGEQ + G F
Sbjct: 1406 GSSEAAGSVETRVAEVCLWEVVEAPSAKKAEICPWEAGGGAAEEGEQERESQGQGEMFLQ 1465
Query: 60 KDGPGGKEATWVVDVKNGKGSVLPNSDKKADCTITMADSDFLALMTGKMNPQSAFFQGKL 119
K GPGG E + K + P +++A C S L +G ++P+ +
Sbjct: 1466 KAGPGGTEEHF------SKAAAKPR-EQEAVCPGEGTGSGGLLPQSGALDPE---LKVSP 1515
Query: 120 KITGNMGLAM 129
K G+MG M
Sbjct: 1516 KEAGSMGSRM 1525
>gi|93352554 GPR158-like 1 [Homo sapiens]
Length = 2367
Score = 28.1 bits (61), Expect = 2.6
Identities = 37/130 (28%), Positives = 50/130 (38%), Gaps = 12/130 (9%)
Query: 2 GFPEAASSFRTHQIEAV--PTSSASDGFKANLVFKEIEKKLEEEGEQFVKKIGGIFAFKV 59
G EAA S T E A KA + E EEGEQ + G F
Sbjct: 2099 GSSEAAGSVETRVAEVCLWEVVEAPSAKKAEICPWEAGGGAAEEGEQERESQGQGEMFLQ 2158
Query: 60 KDGPGGKEATWVVDVKNGKGSVLPNSDKKADCTITMADSDFLALMTGKMNPQSAFFQGKL 119
K GPGG E + K + P +++A C S L +G ++P+ +
Sbjct: 2159 KAGPGGTEEHF------SKAAAKPR-EQEAVCPGEGTGSGGLLPQSGALDPE---LKVSP 2208
Query: 120 KITGNMGLAM 129
K G+MG M
Sbjct: 2209 KEAGSMGSRM 2218
>gi|45331215 leucine zipper, putative tumor suppressor 2 [Homo
sapiens]
Length = 669
Score = 27.7 bits (60), Expect = 3.4
Identities = 17/65 (26%), Positives = 33/65 (50%)
Query: 39 KLEEEGEQFVKKIGGIFAFKVKDGPGGKEATWVVDVKNGKGSVLPNSDKKADCTITMADS 98
+L +E EQ ++ + + + GP +E W V K+G+ S+L K++ + S
Sbjct: 410 QLLQEREQLERRCATLEREQRELGPRLEETKWEVCQKSGEISLLKQQLKESQAELVQKGS 469
Query: 99 DFLAL 103
+ +AL
Sbjct: 470 ELVAL 474
>gi|46575934 KIAA1680 protein isoform 2 [Homo sapiens]
Length = 677
Score = 27.3 bits (59), Expect = 4.4
Identities = 16/43 (37%), Positives = 20/43 (46%)
Query: 72 VDVKNGKGSVLPNSDKKADCTITMADSDFLALMTGKMNPQSAF 114
VDV GS L + AD T S+FLAL ++ AF
Sbjct: 232 VDVTERAGSSLQSPLLSADLTTAQTPSEFLALTEDSVSEMDAF 274
>gi|222831647 KIAA1680 protein isoform 1 [Homo sapiens]
Length = 900
Score = 27.3 bits (59), Expect = 4.4
Identities = 16/43 (37%), Positives = 20/43 (46%)
Query: 72 VDVKNGKGSVLPNSDKKADCTITMADSDFLALMTGKMNPQSAF 114
VDV GS L + AD T S+FLAL ++ AF
Sbjct: 232 VDVTERAGSSLQSPLLSADLTTAQTPSEFLALTEDSVSEMDAF 274
>gi|192455698 glutathione peroxidase 8 [Homo sapiens]
Length = 209
Score = 26.9 bits (58), Expect = 5.8
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 8/59 (13%)
Query: 46 QFVK-KIGGIFAFKVKDGPGGKEATWVVDVKNGKGSVLPNSDKKADCTITMADSDFLAL 103
+F+K KI +AF+VKD G V ++ KG V + +DC +T D ++L L
Sbjct: 38 KFLKPKINSFYAFEVKDAKGR-----TVSLEKYKGKVSLVVNVASDCQLT--DRNYLGL 89
>gi|34452709 bromodomain containing 8 isoform 3 [Homo sapiens]
Length = 757
Score = 26.2 bits (56), Expect = 9.9
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 16 EAVPTSSASDGFKANLVFKEIEKKLE---EEGEQFVKKIGGIFAFKVKDGPGGKE 67
EA P S S +N + +E + + E + ++ G IF ++KD PG E
Sbjct: 471 EASPESMLSPSHGSNPIEDPLEAETQHKFEMSDSLKEESGTIFGSQIKDAPGEDE 525
>gi|34452707 bromodomain containing 8 isoform 2 [Homo sapiens]
Length = 1235
Score = 26.2 bits (56), Expect = 9.9
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 16 EAVPTSSASDGFKANLVFKEIEKKLE---EEGEQFVKKIGGIFAFKVKDGPGGKE 67
EA P S S +N + +E + + E + ++ G IF ++KD PG E
Sbjct: 577 EASPESMLSPSHGSNPIEDPLEAETQHKFEMSDSLKEESGTIFGSQIKDAPGEDE 631
>gi|34452705 bromodomain containing 8 isoform 1 [Homo sapiens]
Length = 951
Score = 26.2 bits (56), Expect = 9.9
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 16 EAVPTSSASDGFKANLVFKEIEKKLE---EEGEQFVKKIGGIFAFKVKDGPGGKE 67
EA P S S +N + +E + + E + ++ G IF ++KD PG E
Sbjct: 650 EASPESMLSPSHGSNPIEDPLEAETQHKFEMSDSLKEESGTIFGSQIKDAPGEDE 704
>gi|7661950 SH2 domain binding protein 1 [Homo sapiens]
Length = 1173
Score = 26.2 bits (56), Expect = 9.9
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 14/70 (20%)
Query: 34 KEIEKKLEEEGEQFVKKIGGIFAF---------KVKDGPGGKEATWVVDVKNGKGSVLPN 84
KE +KKL E+ Q+V+K I F K + G GG+ + K G+ N
Sbjct: 868 KEEQKKLLEQRAQYVEKTKNILMFTGETEATKEKKRGGGGGRRSK-----KGGEFDEFVN 922
Query: 85 SDKKADCTIT 94
D D I+
Sbjct: 923 DDTDDDLPIS 932
>gi|145199237 transcription elongation factor B polypeptide 3
binding protein 1 [Homo sapiens]
Length = 1221
Score = 26.2 bits (56), Expect = 9.9
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 42 EEGEQFVKKIGGIFAFKVKDGPGGKEATWVVDVKNGKGSVLPNSDKK 88
+EG+ KK G A KDG GK+ T D G+ P +DKK
Sbjct: 372 KEGKPKKKKTGAPPAPSCKDGAQGKDKT--KDKGRGRPVEKPRADKK 416
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.132 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,554,610
Number of Sequences: 37866
Number of extensions: 228418
Number of successful extensions: 411
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 395
Number of HSP's gapped (non-prelim): 21
length of query: 143
length of database: 18,247,518
effective HSP length: 92
effective length of query: 51
effective length of database: 14,763,846
effective search space: 752956146
effective search space used: 752956146
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.