Guide to the Human Genome
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Name: SCP2 Sequence: fasta or formatted (59aa) NCBI GI: 55956781
Description:

sterol carrier protein 2 isoform 3 precursor

Referenced in:

Cholesterol Biosynthesis

Other entries for this name:
alt prot [547aa] sterol carrier protein 2 isoform 1 proprotein
alt prot [322aa] sterol carrier protein 2 isoform 2
alt prot [143aa] sterol carrier protein 2 isoform 1 precursor
alt prot [140aa] sterol carrier protein 2 isoform 2 precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.2          6           2
 C cysteine            0.0          0           0
 D aspartate           1.7          1           1
 E glutamate          10.2          6           2
 F phenylalanine       6.8          4           1
 G glycine             3.4          2           1
 H histidine           1.7          1           1
 I isoleucine          5.1          3           1
 K lysine              6.8          4           2
 L leucine             8.5          5           1
 M methionine          1.7          1           1
 N asparagine          1.7          1           1
 P proline             3.4          2           1
 Q glutamine           6.8          4           1
 R arginine            5.1          3           2
 S serine             11.9          7           2
 T threonine           8.5          5           1
 V valine              3.4          2           1
 W tryptophan          3.4          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   sterol carrier protein 2 isoform 3 precursor 
SCP2                  0.638   sterol carrier protein 2 isoform 1 proprotein 
SCP2                  0.638   sterol carrier protein 2 isoform 1 precursor 
SCP2                  0.521   sterol carrier protein 2 isoform 2 precursor 
ABCA3                 0.021   ATP-binding cassette, sub-family A member 3 
GCC1                  0.021   Golgi coiled-coil protein 1 
C22orf41              0.011   hypothetical protein LOC644186 
PEX3                  0.011   peroxisomal biogenesis factor 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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