Search of human proteins with 5454120

Search of human proteins with 5454120

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|5454120 translocase of inner mitochondrial membrane 17
homolog A [Homo sapiens]
         (171 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|5454120 translocase of inner mitochondrial membrane 17 homolo...   350   3e-97
gi|5032181 translocase of inner mitochondrial membrane 17 homolo...   276   6e-75
gi|56606061 translocase of inner mitochondrial membrane 22 homol...    45   2e-05
gi|34486092 adenylate cyclase 5 [Homo sapiens]                         34   0.054
gi|132814467 glutamyl aminopeptidase [Homo sapiens]                    30   1.3  
gi|21264355 SWI/SNF-related matrix-associated actin-dependent re...    28   5.0  
gi|59710109 hypothetical protein LOC51300 [Homo sapiens]               28   5.0  
gi|42475558 SMG-7 homolog isoform 1 [Homo sapiens]                     28   5.0  
gi|42476066 SMG-7 homolog isoform 4 [Homo sapiens]                     28   5.0  
gi|42476070 SMG-7 homolog isoform 2 [Homo sapiens]                     28   5.0  
gi|58218984 single stranded DNA binding protein 4 isoform b [Hom...    28   5.0  
gi|32967311 ephrin receptor EphA2 [Homo sapiens]                       27   6.6  
gi|7705753 complement component 1, q subcomponent, A chain precu...    27   6.6  
gi|5454122 translocase of inner mitochondrial membrane 23 (yeast...    27   6.6  
gi|239744085 PREDICTED: hypothetical protein XP_002343028 isofor...    27   6.6  
gi|239744083 PREDICTED: hypothetical protein XP_002343027 isofor...    27   6.6  
gi|149274607 solute carrier family 25, member 41 [Homo sapiens]        27   6.6  
gi|224458301 family with sequence similarity 186, member A [Homo...    27   8.6  
gi|4507157 sortilin-related receptor containing LDLR class A rep...    27   8.6  

>gi|5454120 translocase of inner mitochondrial membrane 17 homolog A
           [Homo sapiens]
          Length = 171

 Score =  350 bits (899), Expect = 3e-97
 Identities = 171/171 (100%), Positives = 171/171 (100%)

Query: 1   MEEYAREPCPWRIVDDCGGAFTMGTIGGGIFQAIKGFRNSPVGVNHRLRGSLTAIKTRAP 60
           MEEYAREPCPWRIVDDCGGAFTMGTIGGGIFQAIKGFRNSPVGVNHRLRGSLTAIKTRAP
Sbjct: 1   MEEYAREPCPWRIVDDCGGAFTMGTIGGGIFQAIKGFRNSPVGVNHRLRGSLTAIKTRAP 60

Query: 61  QLGGSFAVWGGLFSMIDCSMVQVRGKEDPWNSITSGALTGAILAARNGPVAMVGSAAMGG 120
           QLGGSFAVWGGLFSMIDCSMVQVRGKEDPWNSITSGALTGAILAARNGPVAMVGSAAMGG
Sbjct: 61  QLGGSFAVWGGLFSMIDCSMVQVRGKEDPWNSITSGALTGAILAARNGPVAMVGSAAMGG 120

Query: 121 ILLALIEGAGILLTRFASAQFPNGPQFAEDPSQLPSTQLPSSPFGDYRQYQ 171
           ILLALIEGAGILLTRFASAQFPNGPQFAEDPSQLPSTQLPSSPFGDYRQYQ
Sbjct: 121 ILLALIEGAGILLTRFASAQFPNGPQFAEDPSQLPSTQLPSSPFGDYRQYQ 171


>gi|5032181 translocase of inner mitochondrial membrane 17 homolog B
           [Homo sapiens]
          Length = 172

 Score =  276 bits (706), Expect = 6e-75
 Identities = 130/171 (76%), Positives = 147/171 (85%), Gaps = 1/171 (0%)

Query: 1   MEEYAREPCPWRIVDDCGGAFTMGTIGGGIFQAIKGFRNSPVGVNHRLRGSLTAIKTRAP 60
           MEEYAREPCPWRIVDDCGGAFTMG IGGG+FQAIKGFRN+PVG+ HRLRGS  A++ RAP
Sbjct: 1   MEEYAREPCPWRIVDDCGGAFTMGVIGGGVFQAIKGFRNAPVGIRHRLRGSANAVRIRAP 60

Query: 61  QLGGSFAVWGGLFSMIDCSMVQVRGKEDPWNSITSGALTGAILAARNGPVAMVGSAAMGG 120
           Q+GGSFAVWGGLFS IDC +V++RGKEDPWNSITSGALTGA+LAAR+GP+AMVGSA MGG
Sbjct: 61  QIGGSFAVWGGLFSTIDCGLVRLRGKEDPWNSITSGALTGAVLAARSGPLAMVGSAMMGG 120

Query: 121 ILLALIEGAGILLTRFASAQFPNGPQFAEDPSQLPSTQ-LPSSPFGDYRQY 170
           ILLALIEG GILLTR+ + QF N P F EDPSQLP     P+  +  Y+QY
Sbjct: 121 ILLALIEGVGILLTRYTAQQFRNAPPFLEDPSQLPPKDGTPAPGYPSYQQY 171


>gi|56606061 translocase of inner mitochondrial membrane 22 homolog
           [Homo sapiens]
          Length = 194

 Score = 45.4 bits (106), Expect = 2e-05
 Identities = 36/123 (29%), Positives = 50/123 (40%), Gaps = 5/123 (4%)

Query: 1   MEEYAREPCPWRIVDDCGGAFTMGTIGGGIFQAIK---GFRNSPVGVNHRLRGSLTAIKT 57
           M E A E C ++    C G F +G   G     I    GF           +  L  +  
Sbjct: 61  MIEKAMESCAFKAALACVGGFVLGGAFGVFTAGIDTNVGFDPKDPYRTPTAKEVLKDMGQ 120

Query: 58  RAPQLGGSFAVWGGLFSMIDCSMVQVRGKEDPWNSITSGALTGAILAARNGPVAMVGSAA 117
           R      +FA+ G +FS  +C +   RG  D  NS+ SG +TG  +  R G  A  G+  
Sbjct: 121 RGMSYAKNFAIVGAMFSCTECLIESYRGTSDWKNSVISGCITGGAIGFRAGLKA--GAIG 178

Query: 118 MGG 120
            GG
Sbjct: 179 CGG 181


>gi|34486092 adenylate cyclase 5 [Homo sapiens]
          Length = 1261

 Score = 34.3 bits (77), Expect = 0.054
 Identities = 32/110 (29%), Positives = 49/110 (44%), Gaps = 9/110 (8%)

Query: 43  GVNHRLRGSLTAIKTRAPQLGG------SFAVWGGLF---SMIDCSMVQVRGKEDPWNSI 93
           G   + RG+ +   TRAP  GG      + A  GG       ++  + + RGK    + +
Sbjct: 114 GSRRQRRGAASGGSTRAPPAGGGGGSAAAAASAGGTEVRPRSVEVGLEERRGKGRAADEL 173

Query: 94  TSGALTGAILAARNGPVAMVGSAAMGGILLALIEGAGILLTRFASAQFPN 143
            +GA+ G   +   G  A  GS A  G +L+L      LL  F S +FP+
Sbjct: 174 EAGAVEGGEGSGDGGSSADSGSGAGPGAVLSLGACCLALLQIFRSKKFPS 223


>gi|132814467 glutamyl aminopeptidase [Homo sapiens]
          Length = 957

 Score = 29.6 bits (65), Expect = 1.3
 Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 7/50 (14%)

Query: 121 ILLALIEGAGIL------LTRFASAQFPNGPQFAEDPSQLP-STQLPSSP 163
           IL A++ G G++      LTR   +    GP  A  PS LP ST  PS P
Sbjct: 21  ILCAVVVGVGLIVGLAVGLTRSCDSSGDGGPGTAPAPSHLPSSTASPSGP 70


>gi|21264355 SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin e1 [Homo sapiens]
          Length = 411

 Score = 27.7 bits (60), Expect = 5.0
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)

Query: 145 PQFAEDPSQLPSTQLPSSP-FGDYRQY 170
           P +A  P+  P+TQ+PS+P F  Y  Y
Sbjct: 5   PSYAPPPTPAPATQMPSTPGFVGYNPY 31


>gi|59710109 hypothetical protein LOC51300 [Homo sapiens]
          Length = 285

 Score = 27.7 bits (60), Expect = 5.0
 Identities = 15/60 (25%), Positives = 31/60 (51%)

Query: 63  GGSFAVWGGLFSMIDCSMVQVRGKEDPWNSITSGALTGAILAARNGPVAMVGSAAMGGIL 122
           G   AV+  +F+ ++ S+   R K+   + + +GA+TG++     G   +V    +G +L
Sbjct: 139 GWRTAVFVTIFNTVNTSLNVYRNKDALSHFVIAGAVTGSLFRINVGLRGLVAGGIIGALL 198


>gi|42475558 SMG-7 homolog isoform 1 [Homo sapiens]
          Length = 1137

 Score = 27.7 bits (60), Expect = 5.0
 Identities = 11/20 (55%), Positives = 14/20 (70%)

Query: 144 GPQFAEDPSQLPSTQLPSSP 163
           GPQ ++ PSQ P T LP+ P
Sbjct: 732 GPQQSQPPSQQPLTSLPAQP 751


>gi|42476066 SMG-7 homolog isoform 4 [Homo sapiens]
          Length = 1049

 Score = 27.7 bits (60), Expect = 5.0
 Identities = 11/20 (55%), Positives = 14/20 (70%)

Query: 144 GPQFAEDPSQLPSTQLPSSP 163
           GPQ ++ PSQ P T LP+ P
Sbjct: 644 GPQQSQPPSQQPLTSLPAQP 663


>gi|42476070 SMG-7 homolog isoform 2 [Homo sapiens]
          Length = 1091

 Score = 27.7 bits (60), Expect = 5.0
 Identities = 11/20 (55%), Positives = 14/20 (70%)

Query: 144 GPQFAEDPSQLPSTQLPSSP 163
           GPQ ++ PSQ P T LP+ P
Sbjct: 686 GPQQSQPPSQQPLTSLPAQP 705


>gi|58218984 single stranded DNA binding protein 4 isoform b [Homo
           sapiens]
          Length = 363

 Score = 27.7 bits (60), Expect = 5.0
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 9/60 (15%)

Query: 104 AARNGPVAMVGSAAMGGILLALIEGAGILLTRFASAQFPNGPQFAEDPSQLPSTQLPSSP 163
           +A   P  ++GS A G  + A    AG     F S +FP GP+        P+ ++PS P
Sbjct: 94  SAAAAPSPVMGSMAPGDTMAAGSMAAGFFQP-FMSPRFPGGPR--------PTLRMPSQP 144


>gi|32967311 ephrin receptor EphA2 [Homo sapiens]
          Length = 976

 Score = 27.3 bits (59), Expect = 6.6
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 3/66 (4%)

Query: 107 NGPVAMVGSAAMGGILLALIEGAGILLTRFASAQFPNGPQFAEDPSQLPSTQL-PSSPFG 165
           +G +A++G  A+G +LL ++ G G  + R    Q     Q  ED     S QL P   + 
Sbjct: 532 SGNLAVIGGVAVGVVLLLVLAGVGFFIHRRRKNQ--RARQSPEDVYFSKSEQLKPLKTYV 589

Query: 166 DYRQYQ 171
           D   Y+
Sbjct: 590 DPHTYE 595


>gi|7705753 complement component 1, q subcomponent, A chain
           precursor [Homo sapiens]
          Length = 245

 Score = 27.3 bits (59), Expect = 6.6
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 24  GTIGGGIFQAIKGFRNSPVGVNHRLRGSLTAIKTRAPQLGGSFAVW 69
           G +G      IKG + SP  +  + R + +AI+ R P +GG+  ++
Sbjct: 89  GPLGARGIPGIKGTKGSPGNIKDQPRPAFSAIR-RNPPMGGNVVIF 133


>gi|5454122 translocase of inner mitochondrial membrane 23 (yeast)
           homolog [Homo sapiens]
          Length = 209

 Score = 27.3 bits (59), Expect = 6.6
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 3/45 (6%)

Query: 64  GSFAVWGGLFSMIDCSMVQVRGKEDPWNSITSGALTGAILAARNG 108
           GS A+   L+S     + + RG ED  N++ +G +TG +     G
Sbjct: 132 GSLAL---LYSAFGVIIEKTRGAEDDLNTVAAGTMTGMLYKCTGG 173


>gi|239744085 PREDICTED: hypothetical protein XP_002343028 isoform 2
           [Homo sapiens]
          Length = 172

 Score = 27.3 bits (59), Expect = 6.6
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 3/45 (6%)

Query: 64  GSFAVWGGLFSMIDCSMVQVRGKEDPWNSITSGALTGAILAARNG 108
           GS A+   L+S     + + RG ED  N++ +G +TG +     G
Sbjct: 95  GSLAL---LYSAFGVIIEKTRGAEDDLNTVAAGTMTGMLYKCTGG 136


>gi|239744083 PREDICTED: hypothetical protein XP_002343027 isoform 1
           [Homo sapiens]
          Length = 209

 Score = 27.3 bits (59), Expect = 6.6
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 3/45 (6%)

Query: 64  GSFAVWGGLFSMIDCSMVQVRGKEDPWNSITSGALTGAILAARNG 108
           GS A+   L+S     + + RG ED  N++ +G +TG +     G
Sbjct: 132 GSLAL---LYSAFGVIIEKTRGAEDDLNTVAAGTMTGMLYKCTGG 173


>gi|149274607 solute carrier family 25, member 41 [Homo sapiens]
          Length = 370

 Score = 27.3 bits (59), Expect = 6.6
 Identities = 11/36 (30%), Positives = 19/36 (52%)

Query: 75  MIDCSMVQVRGKEDPWNSITSGALTGAILAARNGPV 110
           M+   +++V  KE  W  + SGA+ GA+      P+
Sbjct: 78  MVPVEVLEVDNKEALWKFLLSGAMAGAVSRTGTAPL 113


>gi|224458301 family with sequence similarity 186, member A [Homo
            sapiens]
          Length = 2351

 Score = 26.9 bits (58), Expect = 8.6
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)

Query: 138  SAQFPNGPQFAEDPSQLPSTQLPSSP 163
            SAQFP  PQ    P QLP ++ P +P
Sbjct: 1810 SAQFP-APQAPPSPGQLPISRAPPTP 1834


>gi|4507157 sortilin-related receptor containing LDLR class A repeats
            preproprotein [Homo sapiens]
          Length = 2214

 Score = 26.9 bits (58), Expect = 8.6
 Identities = 26/85 (30%), Positives = 33/85 (38%), Gaps = 19/85 (22%)

Query: 90   WNSITSGALTGAILAARNGPVAMVGSAAMGGILLALIEGAGILLT--------------- 134
            ++ + SGA   A  AAR+  VA V    +  ILL+L  G  IL T               
Sbjct: 2116 YDELGSGADASATQAARSTDVAAVVVPILFLILLSLGVGFAILYTKHRRLQSSFTAFANS 2175

Query: 135  ----RFASAQFPNGPQFAEDPSQLP 155
                R  SA F +G    ED    P
Sbjct: 2176 HYSSRLGSAIFSSGDDLGEDDEDAP 2200


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.138    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,904,065
Number of Sequences: 37866
Number of extensions: 300486
Number of successful extensions: 738
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 723
Number of HSP's gapped (non-prelim): 20
length of query: 171
length of database: 18,247,518
effective HSP length: 95
effective length of query: 76
effective length of database: 14,650,248
effective search space: 1113418848
effective search space used: 1113418848
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.