Guide to the Human Genome
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Name: OGDH Sequence: fasta or formatted (427aa) NCBI GI: 51873038
Description:

oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide) isoform 2 precursor

Referenced in:

TCA Cycle

Other entries for this name:
alt prot [1023aa] oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide) isof...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.4         36           3
 C cysteine            2.1          9           1
 D aspartate           4.9         21           1
 E glutamate           7.0         30           2
 F phenylalanine       4.7         20           2
 G glycine             5.4         23           2
 H histidine           2.8         12           2
 I isoleucine          5.4         23           2
 K lysine              4.9         21           2
 L leucine             9.1         39           2
 M methionine          2.3         10           1
 N asparagine          3.3         14           1
 P proline             5.2         22           2
 Q glutamine           4.9         21           2
 R arginine            7.5         32           2
 S serine              7.3         31           2
 T threonine           5.2         22           3
 V valine              6.1         26           2
 W tryptophan          0.9          4           1
 Y tyrosine            2.6         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   oxoglutarate (alpha-ketoglutarate) dehydrogenase (li... 
OGDH                  0.942   oxoglutarate (alpha-ketoglutarate) dehydrogenase (li...
OGDHL                 0.622   oxoglutarate dehydrogenase-like isoform a 
OGDHL                 0.523   oxoglutarate dehydrogenase-like isoform b 
OGDHL                 0.363   oxoglutarate dehydrogenase-like isoform c 
DHTKD1                0.109   dehydrogenase E1 and transketolase domain containing...
RASGRF1               0.012   Ras protein-specific guanine nucleotide-releasing f...
RASGRF1               0.012   Ras protein-specific guanine nucleotide-releasing fa...
EPS15L1               0.006   epidermal growth factor receptor pathway substrate 1...
TULP4                 0.005   tubby like protein 4 isoform 2 
TULP4                 0.005   tubby like protein 4 isoform 1 
USP47                 0.005   ubiquitin specific protease 47 
DOCK8                 0.005   dedicator of cytokinesis 8 
VGLL2                 0.005   vestigial-like 2 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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