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Search of human proteins with 51100978
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|51100978 tweety 3 [Homo sapiens]
(523 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|51100978 tweety 3 [Homo sapiens] 1065 0.0
gi|53988385 tweety 2 isoform 1 [Homo sapiens] 402 e-112
gi|53831989 tweety 1 isoform 2 [Homo sapiens] 306 2e-83
gi|10257437 tweety 1 isoform 1 [Homo sapiens] 306 2e-83
gi|53988387 tweety 2 isoform 2 [Homo sapiens] 167 2e-41
gi|98961141 transmembrane protein 168 [Homo sapiens] 34 0.29
gi|116812616 RecQ protein-like 4 [Homo sapiens] 33 0.64
gi|21536371 telomerase-associated protein 1 [Homo sapiens] 32 1.1
gi|224994195 prominin 1 isoform 6 [Homo sapiens] 31 3.2
gi|224994193 prominin 1 isoform 7 [Homo sapiens] 31 3.2
gi|5174387 prominin 1 isoform 1 [Homo sapiens] 31 3.2
gi|12232385 COP9 constitutive photomorphogenic homolog subunit 7... 30 4.1
gi|32490557 poly(A) polymerase alpha [Homo sapiens] 30 7.0
gi|222136615 exonuclease NEF-sp isoform 2 [Homo sapiens] 29 9.2
gi|222136613 exonuclease NEF-sp isoform 1 [Homo sapiens] 29 9.2
gi|224994189 prominin 1 isoform 2 [Homo sapiens] 29 9.2
gi|224994199 prominin 1 isoform 4 [Homo sapiens] 29 9.2
gi|224994197 prominin 1 isoform 5 [Homo sapiens] 29 9.2
gi|224994191 prominin 1 isoform 2 [Homo sapiens] 29 9.2
gi|33188449 serine/arginine-rich protein-specific kinase 2 isofo... 29 9.2
gi|33188447 serine/arginine-rich protein-specific kinase 2 isofo... 29 9.2
gi|163914392 glioma tumor suppressor candidate region gene 1 [Ho... 29 9.2
>gi|51100978 tweety 3 [Homo sapiens]
Length = 523
Score = 1065 bits (2754), Expect = 0.0
Identities = 523/523 (100%), Positives = 523/523 (100%)
Query: 1 MAGVSYAAPWWVSLLHRLPHFDLSWEATSSQFRPEDTDYQQALLLLGAAALACLALDLLF 60
MAGVSYAAPWWVSLLHRLPHFDLSWEATSSQFRPEDTDYQQALLLLGAAALACLALDLLF
Sbjct: 1 MAGVSYAAPWWVSLLHRLPHFDLSWEATSSQFRPEDTDYQQALLLLGAAALACLALDLLF 60
Query: 61 LLFYSFWLCCRRRKSEEHLDADCCCTAWCVIIATLVCSAGIAVGFYGNGETSDGIHRATY 120
LLFYSFWLCCRRRKSEEHLDADCCCTAWCVIIATLVCSAGIAVGFYGNGETSDGIHRATY
Sbjct: 61 LLFYSFWLCCRRRKSEEHLDADCCCTAWCVIIATLVCSAGIAVGFYGNGETSDGIHRATY 120
Query: 121 SLRHANRTVAGVQDRVWDTAVGLNHTAEPSLQTLERQLAGRPEPLRAVQRLQGLLETLLG 180
SLRHANRTVAGVQDRVWDTAVGLNHTAEPSLQTLERQLAGRPEPLRAVQRLQGLLETLLG
Sbjct: 121 SLRHANRTVAGVQDRVWDTAVGLNHTAEPSLQTLERQLAGRPEPLRAVQRLQGLLETLLG 180
Query: 181 YTAAIPFWRNTAVSLEVLAEQVDLYDWYRWLGYLGLLLLDVIICLLVLVGLIRSSKGILV 240
YTAAIPFWRNTAVSLEVLAEQVDLYDWYRWLGYLGLLLLDVIICLLVLVGLIRSSKGILV
Sbjct: 181 YTAAIPFWRNTAVSLEVLAEQVDLYDWYRWLGYLGLLLLDVIICLLVLVGLIRSSKGILV 240
Query: 241 GVCLLGVLALVISWGALGLELAVSVGSSDFCVDPDAYVTKMVEEYSVLSGDILQYYLACS 300
GVCLLGVLALVISWGALGLELAVSVGSSDFCVDPDAYVTKMVEEYSVLSGDILQYYLACS
Sbjct: 241 GVCLLGVLALVISWGALGLELAVSVGSSDFCVDPDAYVTKMVEEYSVLSGDILQYYLACS 300
Query: 301 PRAANPFQQKLSGSHKALVEMQDVVAELLRTVPWEQPATKDPLLRVQEVLNGTEVNLQHL 360
PRAANPFQQKLSGSHKALVEMQDVVAELLRTVPWEQPATKDPLLRVQEVLNGTEVNLQHL
Sbjct: 301 PRAANPFQQKLSGSHKALVEMQDVVAELLRTVPWEQPATKDPLLRVQEVLNGTEVNLQHL 360
Query: 361 TALVDCRSLHLDYVQALTGFCYDGVEGLIYLALFSFVTALMFSSIVCSVPHTWQQKRGPD 420
TALVDCRSLHLDYVQALTGFCYDGVEGLIYLALFSFVTALMFSSIVCSVPHTWQQKRGPD
Sbjct: 361 TALVDCRSLHLDYVQALTGFCYDGVEGLIYLALFSFVTALMFSSIVCSVPHTWQQKRGPD 420
Query: 421 EDGEEEAAPGPRQAHDSLYRVHMPSLYSCGSSYGSETSIPAAAHTVSNAPVTEYMSQNAN 480
EDGEEEAAPGPRQAHDSLYRVHMPSLYSCGSSYGSETSIPAAAHTVSNAPVTEYMSQNAN
Sbjct: 421 EDGEEEAAPGPRQAHDSLYRVHMPSLYSCGSSYGSETSIPAAAHTVSNAPVTEYMSQNAN 480
Query: 481 FQNPRCENTPLIGRESPPPSYTSSMRAKYLATSQPRPDSSGSH 523
FQNPRCENTPLIGRESPPPSYTSSMRAKYLATSQPRPDSSGSH
Sbjct: 481 FQNPRCENTPLIGRESPPPSYTSSMRAKYLATSQPRPDSSGSH 523
>gi|53988385 tweety 2 isoform 1 [Homo sapiens]
Length = 534
Score = 402 bits (1034), Expect = e-112
Identities = 217/521 (41%), Positives = 310/521 (59%), Gaps = 12/521 (2%)
Query: 2 AGVSYAAPWWVSLLHRLPHFDLSWEATSSQFRPEDTDYQQALLLLGAAALACLALDLLFL 61
A V Y APWWV LH +PH L + +S F P D YQ++LL LG A CL L+L+FL
Sbjct: 4 ARVDYIAPWWVVWLHSVPHVGLRLQPVNSTFSPGDESYQESLLFLGLVAAVCLGLNLIFL 63
Query: 62 LFYSFWLC-CRRRKSEEHLDADCCCTAWCVIIATLVCSAGIAVGFYGNGETSDGIHRATY 120
+ Y C CRR + + CC W ++A L+C A + VGFYGN ET+DG ++ Y
Sbjct: 64 VAYLVCACHCRRDDAVQTKQHHSCCITWTAVVAGLICCAAVGVGFYGNSETNDGAYQLMY 123
Query: 121 SLRHANRTVAGVQDRVWDTAVGLNHTAEPSLQTLERQLAGRPEPLRAVQRLQGLLETLLG 180
SL AN T +G+ V T + E L L A R + L+ ++ +Q + +++
Sbjct: 124 SLDDANHTFSGIDALVSGTTQKMKVDLEQHLARLSEIFAARGDYLQTLKFIQQMAGSVVV 183
Query: 181 YTAAIPFWRNTAVSLEVLAEQVDLYDWYRWLGYLGLLLLDVIICLLVLVGLIRSSKGILV 240
+ +P WR + L L++Q ++YRWL YL L +LD++ICL+ +GL + SK +L
Sbjct: 184 QLSGLPVWREVTMELTKLSDQTGYVEYYRWLSYLLLFILDLVICLIACLGLAKRSKCLLA 243
Query: 241 GVCLLGVLALVISWGALGLELAVSVGSSDFCVDPDAYVTKMVEEYSVLSGDILQYYLACS 300
+ G L+L++SW +L + + +V +SDFCV PD ++ + E +S ++ +YYL CS
Sbjct: 244 SMLCCGALSLLLSWASLAADGSAAVATSDFCVAPDTFILNVTE--GQISTEVTRYYLYCS 301
Query: 301 PRAANPFQQKLSGSHKALVEMQDVVAELLR-TVPWEQPATKDPLLRVQEVLNGTEVNLQH 359
++PFQQ L+ +AL MQ VA LL+ VP A +D LL +Q +LN +E +L
Sbjct: 302 QSGSSPFQQTLTTFQRALTTMQIQVAGLLQFAVPLFSTAEED-LLAIQLLLNSSESSLHQ 360
Query: 360 LTALVDCRSLHLDYVQALTGFCYDGVEGLIYLALFSFVTALMFSSIVCSVPHTWQQ--KR 417
LTA+VDCR LH DY+ AL G CYDG++GL+YL LFSF+ AL FS+++C+ P W+ R
Sbjct: 361 LTAMVDCRGLHKDYLDALAGICYDGLQGLLYLGLFSFLAALAFSTMICAGPRAWKHFTTR 420
Query: 418 GPDEDGEEEAAP----GPRQAHDSLYRVHMPSLYSCGSSYGSETSIPAAAHTVSNAPVTE 473
D D ++ P R A S R + S S S GS+TS+ A T+SNAPV+E
Sbjct: 421 NRDYDDIDDDDPFNPQAWRMAAHSPPRGQLHSFCSYSSGLGSQTSLQPPAQTISNAPVSE 480
Query: 474 YMSQNANF-QNPRCENTPLIGRESPPPSYTSSMRAKYLATS 513
YM+Q F +NPR EN PLIGR SPPP+Y+ SMRA YL+ +
Sbjct: 481 YMNQAMLFGRNPRYENVPLIGRASPPPTYSPSMRATYLSVA 521
>gi|53831989 tweety 1 isoform 2 [Homo sapiens]
Length = 460
Score = 306 bits (785), Expect = 2e-83
Identities = 163/411 (39%), Positives = 232/411 (56%), Gaps = 3/411 (0%)
Query: 6 YAAPWWVSLLHRLPHFDLSWEATSSQFRPEDTDYQQALLLLGAAALACLALDLLFLLFYS 65
Y WV LLH+LP D S F P++ +YQQALLL+ A A L L L+F+ Y
Sbjct: 7 YRPSAWVHLLHQLPRADFQLRPVPSVFAPQEQEYQQALLLVAALAGLGLGLSLIFIAVYL 66
Query: 66 FWLCCRRRKSEEHLDADCC---CTAWCVIIATLVCSAGIAVGFYGNGETSDGIHRATYSL 122
CC R C W I+A L GI +GFYGN ETSDG+ + + +L
Sbjct: 67 IRFCCCRPPEPPGSKIPSPGGGCVTWSCIVALLAGCTGIGIGFYGNSETSDGVSQLSSAL 126
Query: 123 RHANRTVAGVQDRVWDTAVGLNHTAEPSLQTLERQLAGRPEPLRAVQRLQGLLETLLGYT 182
HAN T++ + V +T L L TLE L R E + A + + E
Sbjct: 127 LHANHTLSTIDHLVLETVERLGEAVRTELTTLEEVLEPRTELVAAARGARRQAEAAAQQL 186
Query: 183 AAIPFWRNTAVSLEVLAEQVDLYDWYRWLGYLGLLLLDVIICLLVLVGLIRSSKGILVGV 242
+ FW+ +S +AE V + YRWL Y+ LLLL++++CL L+GL + SK +++ +
Sbjct: 187 QGLAFWQGVPLSPLQVAENVSFVEEYRWLAYVLLLLLELLVCLFTLLGLAKQSKWLVIVM 246
Query: 243 CLLGVLALVISWGALGLELAVSVGSSDFCVDPDAYVTKMVEEYSVLSGDILQYYLACSPR 302
++ +L LV+SWG++GLE A +VG SDFC +PD YV + +E + LS DIL YYL C+
Sbjct: 247 TVMSLLVLVLSWGSMGLEAATAVGLSDFCSNPDPYVLNLTQEETGLSSDILSYYLLCNRA 306
Query: 303 AANPFQQKLSGSHKALVEMQDVVAELLRTVPWEQPATKDPLLRVQEVLNGTEVNLQHLTA 362
+NPFQQ+L+ S +AL + + L R + P+ + PLL ++E LN TE N L A
Sbjct: 307 VSNPFQQRLTLSQRALANIHSQLLGLEREAVPQFPSAQKPLLSLEETLNVTEGNFHQLVA 366
Query: 363 LVDCRSLHLDYVQALTGFCYDGVEGLIYLALFSFVTALMFSSIVCSVPHTW 413
L+ CRSLH DY AL G C D +EGL++L LFS ++A ++ +CS+P W
Sbjct: 367 LLHCRSLHKDYGAALRGLCEDALEGLLFLLLFSLLSAGALATALCSLPRAW 417
>gi|10257437 tweety 1 isoform 1 [Homo sapiens]
Length = 450
Score = 306 bits (785), Expect = 2e-83
Identities = 163/411 (39%), Positives = 232/411 (56%), Gaps = 3/411 (0%)
Query: 6 YAAPWWVSLLHRLPHFDLSWEATSSQFRPEDTDYQQALLLLGAAALACLALDLLFLLFYS 65
Y WV LLH+LP D S F P++ +YQQALLL+ A A L L L+F+ Y
Sbjct: 7 YRPSAWVHLLHQLPRADFQLRPVPSVFAPQEQEYQQALLLVAALAGLGLGLSLIFIAVYL 66
Query: 66 FWLCCRRRKSEEHLDADCC---CTAWCVIIATLVCSAGIAVGFYGNGETSDGIHRATYSL 122
CC R C W I+A L GI +GFYGN ETSDG+ + + +L
Sbjct: 67 IRFCCCRPPEPPGSKIPSPGGGCVTWSCIVALLAGCTGIGIGFYGNSETSDGVSQLSSAL 126
Query: 123 RHANRTVAGVQDRVWDTAVGLNHTAEPSLQTLERQLAGRPEPLRAVQRLQGLLETLLGYT 182
HAN T++ + V +T L L TLE L R E + A + + E
Sbjct: 127 LHANHTLSTIDHLVLETVERLGEAVRTELTTLEEVLEPRTELVAAARGARRQAEAAAQQL 186
Query: 183 AAIPFWRNTAVSLEVLAEQVDLYDWYRWLGYLGLLLLDVIICLLVLVGLIRSSKGILVGV 242
+ FW+ +S +AE V + YRWL Y+ LLLL++++CL L+GL + SK +++ +
Sbjct: 187 QGLAFWQGVPLSPLQVAENVSFVEEYRWLAYVLLLLLELLVCLFTLLGLAKQSKWLVIVM 246
Query: 243 CLLGVLALVISWGALGLELAVSVGSSDFCVDPDAYVTKMVEEYSVLSGDILQYYLACSPR 302
++ +L LV+SWG++GLE A +VG SDFC +PD YV + +E + LS DIL YYL C+
Sbjct: 247 TVMSLLVLVLSWGSMGLEAATAVGLSDFCSNPDPYVLNLTQEETGLSSDILSYYLLCNRA 306
Query: 303 AANPFQQKLSGSHKALVEMQDVVAELLRTVPWEQPATKDPLLRVQEVLNGTEVNLQHLTA 362
+NPFQQ+L+ S +AL + + L R + P+ + PLL ++E LN TE N L A
Sbjct: 307 VSNPFQQRLTLSQRALANIHSQLLGLEREAVPQFPSAQKPLLSLEETLNVTEGNFHQLVA 366
Query: 363 LVDCRSLHLDYVQALTGFCYDGVEGLIYLALFSFVTALMFSSIVCSVPHTW 413
L+ CRSLH DY AL G C D +EGL++L LFS ++A ++ +CS+P W
Sbjct: 367 LLHCRSLHKDYGAALRGLCEDALEGLLFLLLFSLLSAGALATALCSLPRAW 417
>gi|53988387 tweety 2 isoform 2 [Homo sapiens]
Length = 213
Score = 167 bits (424), Expect = 2e-41
Identities = 98/201 (48%), Positives = 128/201 (63%), Gaps = 9/201 (4%)
Query: 321 MQDVVAELLR-TVPWEQPATKDPLLRVQEVLNGTEVNLQHLTALVDCRSLHLDYVQALTG 379
MQ VA LL+ VP A +D LL +Q +LN +E +L LTA+VDCR LH DY+ AL G
Sbjct: 1 MQIQVAGLLQFAVPLFSTAEED-LLAIQLLLNSSESSLHQLTAMVDCRGLHKDYLDALAG 59
Query: 380 FCYDGVEGLIYLALFSFVTALMFSSIVCSVPHTWQQ--KRGPDEDGEEEAAP----GPRQ 433
CYDG++GL+YL LFSF+ AL FS+++C+ P W+ R D D ++ P R
Sbjct: 60 ICYDGLQGLLYLGLFSFLAALAFSTMICAGPRAWKHFTTRNRDYDDIDDDDPFNPQAWRM 119
Query: 434 AHDSLYRVHMPSLYSCGSSYGSETSIPAAAHTVSNAPVTEYMSQNANF-QNPRCENTPLI 492
A S R + S S S GS+TS+ A T+SNAPV+EYM+Q F +NPR EN PLI
Sbjct: 120 AAHSPPRGQLHSFCSYSSGLGSQTSLQPPAQTISNAPVSEYMNQAMLFGRNPRYENVPLI 179
Query: 493 GRESPPPSYTSSMRAKYLATS 513
GR SPPP+Y+ SMRA YL+ +
Sbjct: 180 GRASPPPTYSPSMRATYLSVA 200
>gi|98961141 transmembrane protein 168 [Homo sapiens]
Length = 697
Score = 34.3 bits (77), Expect = 0.29
Identities = 18/59 (30%), Positives = 36/59 (61%)
Query: 195 LEVLAEQVDLYDWYRWLGYLGLLLLDVIICLLVLVGLIRSSKGILVGVCLLGVLALVIS 253
LE + +V+++ R+LGYL + L V ICL + V +++ +++ + +LG+ L I+
Sbjct: 20 LEEVNREVNMHSSVRYLGYLARINLLVAICLGLYVRWEKTANSLILVIFILGLFVLGIA 78
>gi|116812616 RecQ protein-like 4 [Homo sapiens]
Length = 1208
Score = 33.1 bits (74), Expect = 0.64
Identities = 29/104 (27%), Positives = 42/104 (40%), Gaps = 3/104 (2%)
Query: 414 QQKRGPDEDGEEEAAPGPRQAHDSLYRVHMPSLYSCGSSYGSETSIPAAAHTVSNAPVTE 473
Q+ R P +D + EAAP +A YR + G S S+PAAA
Sbjct: 21 QRGRRPSQD-DVEAAPEETRALYREYRTLKRTTGQAGGGLRSSESLPAAAEEAPEPRCWG 79
Query: 474 YMSQNANFQNPRCENTPLIGRESPPPSYTSSMRAKYLATSQPRP 517
A ++P ++TP R+ P Y ++A T Q P
Sbjct: 80 PHLNRAATKSP--QSTPGRSRQGSVPDYGQRLKANLKGTLQAGP 121
>gi|21536371 telomerase-associated protein 1 [Homo sapiens]
Length = 2627
Score = 32.3 bits (72), Expect = 1.1
Identities = 22/66 (33%), Positives = 31/66 (46%)
Query: 303 AANPFQQKLSGSHKALVEMQDVVAELLRTVPWEQPATKDPLLRVQEVLNGTEVNLQHLTA 362
+ P +L H L + + V+E LRT+P P +L E +G +V Q LTA
Sbjct: 1359 SGRPLYLRLVTDHLRLFTLYEQVSERLRTLPATVPLLLQHILSTLEKEHGPDVLPQALTA 1418
Query: 363 LVDCRS 368
L RS
Sbjct: 1419 LEVTRS 1424
>gi|224994195 prominin 1 isoform 6 [Homo sapiens]
Length = 834
Score = 30.8 bits (68), Expect = 3.2
Identities = 24/108 (22%), Positives = 42/108 (38%), Gaps = 13/108 (12%)
Query: 24 SWEATSSQFRPEDTDYQQALLLLGAAALACLALDLLFLL-------FYSFWLCCRRRKSE 76
++E+ +PE ++ A + C L LLF++ F+ CC + E
Sbjct: 83 AYESKIDYDKPETVILGLKIVYYEAGIILCCVLGLLFIILMPLVGYFFCMCRCCNKCGGE 142
Query: 77 EHLDAD------CCCTAWCVIIATLVCSAGIAVGFYGNGETSDGIHRA 118
H C A +++ ++ S GI GF N + I R+
Sbjct: 143 MHQRQKENGPFLRKCFAISLLVICIIISIGIFYGFVANHQVRTRIKRS 190
>gi|224994193 prominin 1 isoform 7 [Homo sapiens]
Length = 842
Score = 30.8 bits (68), Expect = 3.2
Identities = 24/108 (22%), Positives = 42/108 (38%), Gaps = 13/108 (12%)
Query: 24 SWEATSSQFRPEDTDYQQALLLLGAAALACLALDLLFLL-------FYSFWLCCRRRKSE 76
++E+ +PE ++ A + C L LLF++ F+ CC + E
Sbjct: 83 AYESKIDYDKPETVILGLKIVYYEAGIILCCVLGLLFIILMPLVGYFFCMCRCCNKCGGE 142
Query: 77 EHLDAD------CCCTAWCVIIATLVCSAGIAVGFYGNGETSDGIHRA 118
H C A +++ ++ S GI GF N + I R+
Sbjct: 143 MHQRQKENGPFLRKCFAISLLVICIIISIGIFYGFVANHQVRTRIKRS 190
>gi|5174387 prominin 1 isoform 1 [Homo sapiens]
Length = 865
Score = 30.8 bits (68), Expect = 3.2
Identities = 24/108 (22%), Positives = 42/108 (38%), Gaps = 13/108 (12%)
Query: 24 SWEATSSQFRPEDTDYQQALLLLGAAALACLALDLLFLL-------FYSFWLCCRRRKSE 76
++E+ +PE ++ A + C L LLF++ F+ CC + E
Sbjct: 83 AYESKIDYDKPETVILGLKIVYYEAGIILCCVLGLLFIILMPLVGYFFCMCRCCNKCGGE 142
Query: 77 EHLDAD------CCCTAWCVIIATLVCSAGIAVGFYGNGETSDGIHRA 118
H C A +++ ++ S GI GF N + I R+
Sbjct: 143 MHQRQKENGPFLRKCFAISLLVICIIISIGIFYGFVANHQVRTRIKRS 190
>gi|12232385 COP9 constitutive photomorphogenic homolog subunit 7B
[Homo sapiens]
Length = 264
Score = 30.4 bits (67), Expect = 4.1
Identities = 21/54 (38%), Positives = 26/54 (48%)
Query: 117 RATYSLRHANRTVAGVQDRVWDTAVGLNHTAEPSLQTLERQLAGRPEPLRAVQR 170
RA + NRT V+ V + L TA S Q +E+QLA R P A QR
Sbjct: 194 RANQYKENHNRTQQQVEAEVTNIKKTLKATASSSAQEMEQQLAERECPPHAEQR 247
>gi|32490557 poly(A) polymerase alpha [Homo sapiens]
Length = 745
Score = 29.6 bits (65), Expect = 7.0
Identities = 28/88 (31%), Positives = 33/88 (37%), Gaps = 14/88 (15%)
Query: 446 LYSCGSSYGSETSIPAA-AHTVSNAPVTEYMSQNANFQN----------PRCENTPLIGR 494
L S GSS G + PA A +V+N TE N P+ P I
Sbjct: 547 LNSSGSSQGRNSPAPAVTAASVTNIQATEVSVPQVNSSESSGGTSSESIPQTATQPAI-- 604
Query: 495 ESPPPSYTSSMRAKYLATSQPRPDSSGS 522
SPPP T S P P SSG+
Sbjct: 605 -SPPPKPTVSRVVSSTRLVNPPPRSSGN 631
>gi|222136615 exonuclease NEF-sp isoform 2 [Homo sapiens]
Length = 743
Score = 29.3 bits (64), Expect = 9.2
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 186 PFWRNTAVSLEVLAEQVDLYDWYRWLGYLGLLLLDVIICLLVLVGLIRSSKGILVGVCLL 245
PF + +L++ ++ + W R +G L L +CL++L G +S+ G L G+ L+
Sbjct: 670 PFEQEALQTLKLDHPKIAAWRWSRKIGKLYNSLCPGTLCLILLPG-TKSTHGSLSGLGLM 728
Query: 246 GV 247
G+
Sbjct: 729 GI 730
>gi|222136613 exonuclease NEF-sp isoform 1 [Homo sapiens]
Length = 774
Score = 29.3 bits (64), Expect = 9.2
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 186 PFWRNTAVSLEVLAEQVDLYDWYRWLGYLGLLLLDVIICLLVLVGLIRSSKGILVGVCLL 245
PF + +L++ ++ + W R +G L L +CL++L G +S+ G L G+ L+
Sbjct: 701 PFEQEALQTLKLDHPKIAAWRWSRKIGKLYNSLCPGTLCLILLPG-TKSTHGSLSGLGLM 759
Query: 246 GV 247
G+
Sbjct: 760 GI 761
>gi|224994189 prominin 1 isoform 2 [Homo sapiens]
Length = 856
Score = 29.3 bits (64), Expect = 9.2
Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 14/94 (14%)
Query: 38 DYQQALLLLGAAALACLALDLLFLL-------FYSFWLCCRRRKSEEHLDAD------CC 84
DY + ++ A + C L LLF++ F+ CC + E H
Sbjct: 89 DYDK-IVYYEAGIILCCVLGLLFIILMPLVGYFFCMCRCCNKCGGEMHQRQKENGPFLRK 147
Query: 85 CTAWCVIIATLVCSAGIAVGFYGNGETSDGIHRA 118
C A +++ ++ S GI GF N + I R+
Sbjct: 148 CFAISLLVICIIISIGIFYGFVANHQVRTRIKRS 181
>gi|224994199 prominin 1 isoform 4 [Homo sapiens]
Length = 825
Score = 29.3 bits (64), Expect = 9.2
Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 14/94 (14%)
Query: 38 DYQQALLLLGAAALACLALDLLFLL-------FYSFWLCCRRRKSEEHLDAD------CC 84
DY + ++ A + C L LLF++ F+ CC + E H
Sbjct: 89 DYDK-IVYYEAGIILCCVLGLLFIILMPLVGYFFCMCRCCNKCGGEMHQRQKENGPFLRK 147
Query: 85 CTAWCVIIATLVCSAGIAVGFYGNGETSDGIHRA 118
C A +++ ++ S GI GF N + I R+
Sbjct: 148 CFAISLLVICIIISIGIFYGFVANHQVRTRIKRS 181
>gi|224994197 prominin 1 isoform 5 [Homo sapiens]
Length = 833
Score = 29.3 bits (64), Expect = 9.2
Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 14/94 (14%)
Query: 38 DYQQALLLLGAAALACLALDLLFLL-------FYSFWLCCRRRKSEEHLDAD------CC 84
DY + ++ A + C L LLF++ F+ CC + E H
Sbjct: 89 DYDK-IVYYEAGIILCCVLGLLFIILMPLVGYFFCMCRCCNKCGGEMHQRQKENGPFLRK 147
Query: 85 CTAWCVIIATLVCSAGIAVGFYGNGETSDGIHRA 118
C A +++ ++ S GI GF N + I R+
Sbjct: 148 CFAISLLVICIIISIGIFYGFVANHQVRTRIKRS 181
>gi|224994191 prominin 1 isoform 2 [Homo sapiens]
Length = 856
Score = 29.3 bits (64), Expect = 9.2
Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 14/94 (14%)
Query: 38 DYQQALLLLGAAALACLALDLLFLL-------FYSFWLCCRRRKSEEHLDAD------CC 84
DY + ++ A + C L LLF++ F+ CC + E H
Sbjct: 89 DYDK-IVYYEAGIILCCVLGLLFIILMPLVGYFFCMCRCCNKCGGEMHQRQKENGPFLRK 147
Query: 85 CTAWCVIIATLVCSAGIAVGFYGNGETSDGIHRA 118
C A +++ ++ S GI GF N + I R+
Sbjct: 148 CFAISLLVICIIISIGIFYGFVANHQVRTRIKRS 181
>gi|33188449 serine/arginine-rich protein-specific kinase 2 isoform
a [Homo sapiens]
Length = 699
Score = 29.3 bits (64), Expect = 9.2
Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 10/93 (10%)
Query: 420 DEDGEEEAAPGPRQAHDSLYRVHMPSLYSCGSSYGS-ETSIPAAAHTVSNAPVTEYMSQ- 477
DED +EE P P + +L + S Y+ SSY +P H + + E+ +
Sbjct: 411 DEDDDEEDCPNPEEY--NLDEPNAESDYTYSSSYEQFNGELPNGRHKIPESQFPEFSTSL 468
Query: 478 -NANFQNPRC-----ENTPLIGRESPPPSYTSS 504
+ + + C E +PL +E PS+ S
Sbjct: 469 FSGSLEPVACGSVLSEGSPLTEQEESSPSHDRS 501
>gi|33188447 serine/arginine-rich protein-specific kinase 2 isoform
b [Homo sapiens]
Length = 688
Score = 29.3 bits (64), Expect = 9.2
Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 10/93 (10%)
Query: 420 DEDGEEEAAPGPRQAHDSLYRVHMPSLYSCGSSYGS-ETSIPAAAHTVSNAPVTEYMSQ- 477
DED +EE P P + +L + S Y+ SSY +P H + + E+ +
Sbjct: 400 DEDDDEEDCPNPEEY--NLDEPNAESDYTYSSSYEQFNGELPNGRHKIPESQFPEFSTSL 457
Query: 478 -NANFQNPRC-----ENTPLIGRESPPPSYTSS 504
+ + + C E +PL +E PS+ S
Sbjct: 458 FSGSLEPVACGSVLSEGSPLTEQEESSPSHDRS 490
>gi|163914392 glioma tumor suppressor candidate region gene 1 [Homo
sapiens]
Length = 1560
Score = 29.3 bits (64), Expect = 9.2
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 13/70 (18%)
Query: 297 LACSPRAANPFQQKLSG--------SHKALVEMQDVVAELLRTVPWEQP-----ATKDPL 343
+A P+A P L G +H+ALV QDVV + L P+ QP T P+
Sbjct: 152 VAAGPQALFPGSTDLLGLQGPPTVLTHQALVPPQDVVNKALSVQPFLQPVGLGNVTLQPI 211
Query: 344 LRVQEVLNGT 353
+Q + NG+
Sbjct: 212 PGLQGLPNGS 221
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.135 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,954,323
Number of Sequences: 37866
Number of extensions: 955417
Number of successful extensions: 2862
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 2836
Number of HSP's gapped (non-prelim): 36
length of query: 523
length of database: 18,247,518
effective HSP length: 107
effective length of query: 416
effective length of database: 14,195,856
effective search space: 5905476096
effective search space used: 5905476096
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.