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Search of human proteins with 50345988
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|50345988 ATP synthase, H+ transporting, mitochondrial F1
complex, gamma subunit isoform L (liver) precursor [Homo sapiens]
(298 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|50345988 ATP synthase, H+ transporting, mitochondrial F1 comp... 573 e-164
gi|4885079 ATP synthase, H+ transporting, mitochondrial F1 compl... 570 e-163
gi|36949366 mutS homolog 4 [Homo sapiens] 31 1.2
gi|6912680 meiotic recombination protein SPO11 isoform a [Homo s... 31 1.5
gi|239753064 PREDICTED: hypothetical protein [Homo sapiens] 30 2.6
gi|239747619 PREDICTED: hypothetical protein XP_002347911 [Homo ... 30 2.6
gi|239741490 PREDICTED: hypothetical protein XP_002342214 [Homo ... 30 2.6
gi|49640011 tetratricopeptide repeat domain 3 [Homo sapiens] 30 2.6
gi|49640009 tetratricopeptide repeat domain 3 [Homo sapiens] 30 2.6
gi|150010540 FERM domain containing 4B [Homo sapiens] 30 2.6
gi|4504063 golgin 97 [Homo sapiens] 29 4.4
gi|207029299 NIMA-related kinase 10 isoform 3 [Homo sapiens] 29 5.7
gi|21237725 phosphoinositide-3-kinase, catalytic, gamma polypept... 28 7.5
gi|41281753 NIMA-related kinase 11 isoform 2 [Homo sapiens] 28 9.8
gi|225637562 NIMA-related kinase 11 isoform 3 [Homo sapiens] 28 9.8
gi|225637560 NIMA-related kinase 11 isoform 1 [Homo sapiens] 28 9.8
gi|40255119 RAS and EF-hand domain containing [Homo sapiens] 28 9.8
>gi|50345988 ATP synthase, H+ transporting, mitochondrial F1
complex, gamma subunit isoform L (liver) precursor [Homo
sapiens]
Length = 298
Score = 573 bits (1476), Expect = e-164
Identities = 298/298 (100%), Positives = 298/298 (100%)
Query: 1 MFSRAGVAGLSAWTLQPQWIQVRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAE 60
MFSRAGVAGLSAWTLQPQWIQVRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAE
Sbjct: 1 MFSRAGVAGLSAWTLQPQWIQVRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAE 60
Query: 61 RELKPARIYGLGSLALYEKADIKGPEDKKKHLLIGVSSDRGLCGAIHSSIAKQMKSEVAT 120
RELKPARIYGLGSLALYEKADIKGPEDKKKHLLIGVSSDRGLCGAIHSSIAKQMKSEVAT
Sbjct: 61 RELKPARIYGLGSLALYEKADIKGPEDKKKHLLIGVSSDRGLCGAIHSSIAKQMKSEVAT 120
Query: 121 LTAAGKEVMLVGIGDKIRGILYRTHSDQFLVAFKEVGRKPPTFGDASVIALELLNSGYEF 180
LTAAGKEVMLVGIGDKIRGILYRTHSDQFLVAFKEVGRKPPTFGDASVIALELLNSGYEF
Sbjct: 121 LTAAGKEVMLVGIGDKIRGILYRTHSDQFLVAFKEVGRKPPTFGDASVIALELLNSGYEF 180
Query: 181 DEGSIIFNKFRSVISYKTEEKPIFSLNTVASADSMSIYDDIDADVLQNYQEYNLANIIYY 240
DEGSIIFNKFRSVISYKTEEKPIFSLNTVASADSMSIYDDIDADVLQNYQEYNLANIIYY
Sbjct: 181 DEGSIIFNKFRSVISYKTEEKPIFSLNTVASADSMSIYDDIDADVLQNYQEYNLANIIYY 240
Query: 241 SLKESTTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAALD 298
SLKESTTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAALD
Sbjct: 241 SLKESTTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAALD 298
>gi|4885079 ATP synthase, H+ transporting, mitochondrial F1 complex,
gamma subunit isoform H (heart) precursor [Homo sapiens]
Length = 297
Score = 570 bits (1470), Expect = e-163
Identities = 297/297 (100%), Positives = 297/297 (100%)
Query: 1 MFSRAGVAGLSAWTLQPQWIQVRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAE 60
MFSRAGVAGLSAWTLQPQWIQVRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAE
Sbjct: 1 MFSRAGVAGLSAWTLQPQWIQVRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAE 60
Query: 61 RELKPARIYGLGSLALYEKADIKGPEDKKKHLLIGVSSDRGLCGAIHSSIAKQMKSEVAT 120
RELKPARIYGLGSLALYEKADIKGPEDKKKHLLIGVSSDRGLCGAIHSSIAKQMKSEVAT
Sbjct: 61 RELKPARIYGLGSLALYEKADIKGPEDKKKHLLIGVSSDRGLCGAIHSSIAKQMKSEVAT 120
Query: 121 LTAAGKEVMLVGIGDKIRGILYRTHSDQFLVAFKEVGRKPPTFGDASVIALELLNSGYEF 180
LTAAGKEVMLVGIGDKIRGILYRTHSDQFLVAFKEVGRKPPTFGDASVIALELLNSGYEF
Sbjct: 121 LTAAGKEVMLVGIGDKIRGILYRTHSDQFLVAFKEVGRKPPTFGDASVIALELLNSGYEF 180
Query: 181 DEGSIIFNKFRSVISYKTEEKPIFSLNTVASADSMSIYDDIDADVLQNYQEYNLANIIYY 240
DEGSIIFNKFRSVISYKTEEKPIFSLNTVASADSMSIYDDIDADVLQNYQEYNLANIIYY
Sbjct: 181 DEGSIIFNKFRSVISYKTEEKPIFSLNTVASADSMSIYDDIDADVLQNYQEYNLANIIYY 240
Query: 241 SLKESTTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAAL 297
SLKESTTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAAL
Sbjct: 241 SLKESTTSEQSARMTAMDNASKNASEMIDKLTLTFNRTRQAVITKELIEIISGAAAL 297
>gi|36949366 mutS homolog 4 [Homo sapiens]
Length = 936
Score = 31.2 bits (69), Expect = 1.2
Identities = 37/181 (20%), Positives = 75/181 (41%), Gaps = 13/181 (7%)
Query: 106 IHSSIAKQMKSEVATLTAAGKEVMLVGIGDKIRGILYRTHSDQFLVAFKEVGRKPPTFGD 165
I + I + +E ++ A + + D I T+S F+ KE+ D
Sbjct: 698 IMAQIGSYVPAEYSSFRIAKQIFTRISTDDDIE-----TNSSTFMKEMKEIAYILHNAND 752
Query: 166 ASVIALELLNSGYEFDEG-SIIFNKFRSVISYKTEEKPIFSLNTVASADSMSIYDDI--- 221
S+I ++ L G +EG I + ++S K +F+ + + ++Y ++
Sbjct: 753 KSLILIDELGRGTNTEEGIGICYAVCEYLLSLKA--FTLFATHFLELCHIDALYPNVENM 810
Query: 222 --DADVLQNYQEYNLANIIYYSLKESTTSEQSARMTAMDNASKNASEMIDKLTLTFNRTR 279
+ ++N A + Y L + T E++ + A + +S S ++D +T TR
Sbjct: 811 HFEVQHVKNTSRNKEAILYTYKLSKGLTEEKNYGLKAAEVSSLPPSIVLDAKEITTQITR 870
Query: 280 Q 280
Q
Sbjct: 871 Q 871
>gi|6912680 meiotic recombination protein SPO11 isoform a [Homo
sapiens]
Length = 396
Score = 30.8 bits (68), Expect = 1.5
Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 10/85 (11%)
Query: 145 HSDQFLVAFKEVGRKPPTFGDASVIALELLNSGYEFDEGSIIFNKFRSVI-SYKTEEKPI 203
H + L A + GR+PPT G + E+L S I N + +I S E P
Sbjct: 19 HRESLLAALRRGGREPPTGGSRLASSSEVLAS---------IENIIQDIITSLARNEAPA 69
Query: 204 FSLNTVASADSMSIYDDIDADVLQN 228
F+++ +S +++ D + ++ +
Sbjct: 70 FTIDNRSSWENIKFEDSVGLQMVSH 94
>gi|239753064 PREDICTED: hypothetical protein [Homo sapiens]
Length = 201
Score = 30.0 bits (66), Expect = 2.6
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 91 HLLIGVSSDRGLCGAIHSSIAKQMKSEVATLTAAGKEVMLVGIGDKIRGILYRTHS 146
HLL GV GL G +H + +K ++ L A G + G+G++ G+L +H+
Sbjct: 61 HLLEGVEGQHGLDGHVHGGHVEGLKHDLGHLLAVGLGIE-GGLGEQ-GGVLLGSHA 114
>gi|239747619 PREDICTED: hypothetical protein XP_002347911 [Homo
sapiens]
Length = 201
Score = 30.0 bits (66), Expect = 2.6
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 91 HLLIGVSSDRGLCGAIHSSIAKQMKSEVATLTAAGKEVMLVGIGDKIRGILYRTHS 146
HLL GV GL G +H + +K ++ L A G + G+G++ G+L +H+
Sbjct: 61 HLLEGVEGQHGLDGHVHGGHVEGLKHDLGHLLAVGLGIE-GGLGEQ-GGVLLGSHA 114
>gi|239741490 PREDICTED: hypothetical protein XP_002342214 [Homo
sapiens]
Length = 201
Score = 30.0 bits (66), Expect = 2.6
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 91 HLLIGVSSDRGLCGAIHSSIAKQMKSEVATLTAAGKEVMLVGIGDKIRGILYRTHS 146
HLL GV GL G +H + +K ++ L A G + G+G++ G+L +H+
Sbjct: 61 HLLEGVEGQHGLDGHVHGGHVEGLKHDLGHLLAVGLGIE-GGLGEQ-GGVLLGSHA 114
>gi|49640011 tetratricopeptide repeat domain 3 [Homo sapiens]
Length = 2025
Score = 30.0 bits (66), Expect = 2.6
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 17 PQWIQVRNMATLKDITRRLKSIKNIQKI-TKSMKMVAAAKYARAERELKPA 66
P+++ + N LK + RLK + + I TK ++ A +Y R + +L PA
Sbjct: 1160 PRFVVIDNCIALKKVASRLKKKRKKKNIKTKVEEISKAGEYVRVKLQLNPA 1210
>gi|49640009 tetratricopeptide repeat domain 3 [Homo sapiens]
Length = 2025
Score = 30.0 bits (66), Expect = 2.6
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 17 PQWIQVRNMATLKDITRRLKSIKNIQKI-TKSMKMVAAAKYARAERELKPA 66
P+++ + N LK + RLK + + I TK ++ A +Y R + +L PA
Sbjct: 1160 PRFVVIDNCIALKKVASRLKKKRKKKNIKTKVEEISKAGEYVRVKLQLNPA 1210
>gi|150010540 FERM domain containing 4B [Homo sapiens]
Length = 1034
Score = 30.0 bits (66), Expect = 2.6
Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
Query: 193 VISYKTEEKPIFSLNTVASADSMSIYDDIDADVLQNYQEYNLANII---YYSLKESTTSE 249
++S +KP FSL+ + S I DD + Q+ EY + YY+ + T
Sbjct: 701 LLSEMDSDKPFFSLSKSQRSSSTEILDDGSSYTSQSSTEYYCVTPVTGPYYTTQTLDTRT 760
Query: 250 QSARMTAMDNASKNASEMIDKL 271
+ R + N S + S + L
Sbjct: 761 RGRRRSKKQNVSTSNSGSMPNL 782
>gi|4504063 golgin 97 [Homo sapiens]
Length = 767
Score = 29.3 bits (64), Expect = 4.4
Identities = 27/118 (22%), Positives = 50/118 (42%), Gaps = 20/118 (16%)
Query: 166 ASVIALELLNSGYEFDEGSIIFNKFRSVISYKTEEKPIFSLNTVASADSMSIYDDIDADV 225
A +AL L E+ E K +++++ + +E S+N D M D
Sbjct: 121 AEGLALALARKDQEWSEKMDQLEKEKNILTAQLQEMKNQSMNLFQRRDEM--------DE 172
Query: 226 LQNYQEYNLANIIYYSLK------------ESTTSEQSARMTAMDNASKNASEMIDKL 271
L+ +Q+ L+ I + LK E+ T E S + N+++ +S++ KL
Sbjct: 173 LEGFQQQELSKIKHMLLKKEESLGKMEQELEARTRELSRTQEELMNSNQMSSDLSQKL 230
>gi|207029299 NIMA-related kinase 10 isoform 3 [Homo sapiens]
Length = 712
Score = 28.9 bits (63), Expect = 5.7
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 119 ATLTAAGKEVMLVGIGDKIRGILY--RTHSDQFLVAFKEVGRKPPTFG 164
A L G +L +G G +Y R HS Q L+A KEV P FG
Sbjct: 511 APLKYIGNYAILDHLGSGAFGCVYKVRKHSGQNLLAMKEVNLHNPAFG 558
>gi|21237725 phosphoinositide-3-kinase, catalytic, gamma polypeptide
[Homo sapiens]
Length = 1102
Score = 28.5 bits (62), Expect = 7.5
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 26 ATLKDITRRLKSIKNIQKITKSMKMVAAAKY 56
A L D T++++ I+ +QK+T +K ++A KY
Sbjct: 727 AMLHDFTQQVQVIEMLQKVTLDIKSLSAEKY 757
>gi|41281753 NIMA-related kinase 11 isoform 2 [Homo sapiens]
Length = 470
Score = 28.1 bits (61), Expect = 9.8
Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 34 RLKSIKNIQKITKSMKMVAAAKY---ARAERELKPARIYGLGSLALYEKADIKGPEDKKK 90
RL+ ++ + + +K + KY ++ +EL+ L L+EK +KG E+K++
Sbjct: 346 RLRKLQAADEKARKLKKIVEEKYEENSKRMQELRSRNFQQLSVDVLHEKTHLKGMEEKEE 405
>gi|225637562 NIMA-related kinase 11 isoform 3 [Homo sapiens]
Length = 599
Score = 28.1 bits (61), Expect = 9.8
Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 34 RLKSIKNIQKITKSMKMVAAAKY---ARAERELKPARIYGLGSLALYEKADIKGPEDKKK 90
RL+ ++ + + +K + KY ++ +EL+ L L+EK +KG E+K++
Sbjct: 346 RLRKLQAADEKARKLKKIVEEKYEENSKRMQELRSRNFQQLSVDVLHEKTHLKGMEEKEE 405
>gi|225637560 NIMA-related kinase 11 isoform 1 [Homo sapiens]
Length = 645
Score = 28.1 bits (61), Expect = 9.8
Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 34 RLKSIKNIQKITKSMKMVAAAKY---ARAERELKPARIYGLGSLALYEKADIKGPEDKKK 90
RL+ ++ + + +K + KY ++ +EL+ L L+EK +KG E+K++
Sbjct: 346 RLRKLQAADEKARKLKKIVEEKYEENSKRMQELRSRNFQQLSVDVLHEKTHLKGMEEKEE 405
>gi|40255119 RAS and EF-hand domain containing [Homo sapiens]
Length = 740
Score = 28.1 bits (61), Expect = 9.8
Identities = 23/97 (23%), Positives = 43/97 (44%), Gaps = 5/97 (5%)
Query: 20 IQVRNMATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARIYGLGSLALYEK 79
+ + N KD+ +I +Q ++K A + ER+L+ R Y +L +
Sbjct: 279 LSMENQKVKKDLLEAQTNIAFLQSELDALKSDYADQSLNTERDLEIIRAYTEDRNSLERQ 338
Query: 80 ADIKGPEDKKKHLLIGVSSDRGLCGAIHSSIAKQMKS 116
+I ++K H S+ GL A+ +S +K +S
Sbjct: 339 IEILQTANRKLH-----DSNDGLRSALENSYSKFNRS 370
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.130 0.353
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,808,573
Number of Sequences: 37866
Number of extensions: 316357
Number of successful extensions: 873
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 866
Number of HSP's gapped (non-prelim): 17
length of query: 298
length of database: 18,247,518
effective HSP length: 102
effective length of query: 196
effective length of database: 14,385,186
effective search space: 2819496456
effective search space used: 2819496456
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.