Guide to the Human Genome
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Name: ATP5C1 Sequence: fasta or formatted (298aa) NCBI GI: 50345988
Description:

ATP synthase, H+ transporting, mitochondrial F1 complex, gamma subunit isoform L (liver) precursor

Referenced in:

Oxidative Phosphorylation

Other entries for this name:
alt prot [297aa] ATP synthase, H+ transporting, mitochondrial F1 complex, gamma su...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.7         32           3
 C cysteine            0.3          1           1
 D aspartate           5.4         16           2
 E glutamate           6.0         18           2
 F phenylalanine       3.0          9           1
 G glycine             5.7         17           1
 H histidine           1.0          3           1
 I isoleucine          9.1         27           2
 K lysine              8.7         26           3
 L leucine             8.7         26           2
 M methionine          3.4         10           1
 N asparagine          3.7         11           1
 P proline             2.0          6           2
 Q glutamine           3.4         10           1
 R arginine            5.0         15           2
 S serine              9.1         27           2
 T threonine           5.7         17           2
 V valine              4.7         14           1
 W tryptophan          0.7          2           1
 Y tyrosine            3.7         11           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ATP synthase, H+ transporting, mitochondrial F1 comp... 
ATP5C1                0.995   ATP synthase, H+ transporting, mitochondrial F1 compl...
MSH4                  0.011   mutS homolog 4 
SPO11                 0.011   meiotic recombination protein SPO11 isoform a 
LOC100293537          0.009   PREDICTED: hypothetical protein 
LOC100289822          0.009   PREDICTED: hypothetical protein XP_002347911 
LOC100288545          0.009   PREDICTED: hypothetical protein XP_002342214 
TTC3                  0.009   tetratricopeptide repeat domain 3 
TTC3                  0.009   tetratricopeptide repeat domain 3 
FRMD4B                0.009   FERM domain containing 4B 
GOLGA1                0.007   golgin 97 
NEK10                 0.007   NIMA-related kinase 10 isoform 3 
PIK3CG                0.005   phosphoinositide-3-kinase, catalytic, gamma polypept...
NEK11                 0.005   NIMA-related kinase 11 isoform 2 
NEK11                 0.005   NIMA-related kinase 11 isoform 3 
NEK11                 0.005   NIMA-related kinase 11 isoform 1 
RASEF                 0.005   RAS and EF-hand domain containing 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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