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Search of human proteins with 5031635
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|5031635 cofilin 1 (non-muscle) [Homo sapiens]
(166 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|5031635 cofilin 1 (non-muscle) [Homo sapiens] 330 3e-91
gi|14719392 cofilin 2 [Homo sapiens] 273 4e-74
gi|33946278 cofilin 2 [Homo sapiens] 273 4e-74
gi|5802966 destrin isoform a [Homo sapiens] 237 3e-63
gi|58530848 destrin isoform b [Homo sapiens] 218 1e-57
gi|169165083 PREDICTED: similar to Destrin (actin depolymerizing... 167 5e-42
gi|169165465 PREDICTED: similar to Destrin (actin depolymerizing... 165 1e-41
gi|113415024 PREDICTED: similar to destrin [Homo sapiens] 165 1e-41
gi|239754918 PREDICTED: similar to destrin [Homo sapiens] 144 3e-35
gi|239749458 PREDICTED: similar to destrin [Homo sapiens] 144 3e-35
gi|239743590 PREDICTED: hypothetical protein XP_002342890 [Homo ... 144 3e-35
gi|40068475 twinfilin 1 [Homo sapiens] 45 2e-05
gi|6005846 twinfilin-like protein [Homo sapiens] 41 5e-04
gi|4758442 glia maturation factor, beta [Homo sapiens] 35 0.023
gi|4758440 glia maturation factor, gamma [Homo sapiens] 31 0.56
gi|56549113 debranching enzyme homolog 1 [Homo sapiens] 30 0.95
gi|148596984 golgi autoantigen, golgin subfamily b, macrogolgin ... 30 1.2
gi|24308241 zinc finger and BTB domain containing 2 [Homo sapiens] 27 6.1
gi|31542743 EF-hand domain (C-terminal) containing 2 [Homo sapiens] 27 8.0
gi|126157508 N-acetylated alpha-linked acidic dipeptidase 2 [Hom... 27 8.0
gi|72534670 phospholipase A2-activating protein [Homo sapiens] 27 8.0
>gi|5031635 cofilin 1 (non-muscle) [Homo sapiens]
Length = 166
Score = 330 bits (846), Expect = 3e-91
Identities = 166/166 (100%), Positives = 166/166 (100%)
Query: 1 MASGVAVSDGVIKVFNDMKVRKSSTPEEVKKRKKAVLFCLSEDKKNIILEEGKEILVGDV 60
MASGVAVSDGVIKVFNDMKVRKSSTPEEVKKRKKAVLFCLSEDKKNIILEEGKEILVGDV
Sbjct: 1 MASGVAVSDGVIKVFNDMKVRKSSTPEEVKKRKKAVLFCLSEDKKNIILEEGKEILVGDV 60
Query: 61 GQTVDDPYATFVKMLPDKDCRYALYDATYETKESKKEDLVFIFWAPESAPLKSKMIYASS 120
GQTVDDPYATFVKMLPDKDCRYALYDATYETKESKKEDLVFIFWAPESAPLKSKMIYASS
Sbjct: 61 GQTVDDPYATFVKMLPDKDCRYALYDATYETKESKKEDLVFIFWAPESAPLKSKMIYASS 120
Query: 121 KDAIKKKLTGIKHELQANCYEEVKDRCTLAEKLGGSAVISLEGKPL 166
KDAIKKKLTGIKHELQANCYEEVKDRCTLAEKLGGSAVISLEGKPL
Sbjct: 121 KDAIKKKLTGIKHELQANCYEEVKDRCTLAEKLGGSAVISLEGKPL 166
>gi|14719392 cofilin 2 [Homo sapiens]
Length = 166
Score = 273 bits (699), Expect = 4e-74
Identities = 134/166 (80%), Positives = 149/166 (89%)
Query: 1 MASGVAVSDGVIKVFNDMKVRKSSTPEEVKKRKKAVLFCLSEDKKNIILEEGKEILVGDV 60
MASGV V+D VIKVFNDMKVRKSST EE+KKRKKAVLFCLS+DK+ II+EE K+ILVGD+
Sbjct: 1 MASGVTVNDEVIKVFNDMKVRKSSTQEEIKKRKKAVLFCLSDDKRQIIVEEAKQILVGDI 60
Query: 61 GQTVDDPYATFVKMLPDKDCRYALYDATYETKESKKEDLVFIFWAPESAPLKSKMIYASS 120
G TV+DPY +FVK+LP DCRYALYDATYETKESKKEDLVFIFWAPESAPLKSKMIYASS
Sbjct: 61 GDTVEDPYTSFVKLLPLNDCRYALYDATYETKESKKEDLVFIFWAPESAPLKSKMIYASS 120
Query: 121 KDAIKKKLTGIKHELQANCYEEVKDRCTLAEKLGGSAVISLEGKPL 166
KDAIKKK TGIKHE Q N +++KDR TL EKLGG+ V+SLEGKPL
Sbjct: 121 KDAIKKKFTGIKHEWQVNGLDDIKDRSTLGEKLGGNVVVSLEGKPL 166
>gi|33946278 cofilin 2 [Homo sapiens]
Length = 166
Score = 273 bits (699), Expect = 4e-74
Identities = 134/166 (80%), Positives = 149/166 (89%)
Query: 1 MASGVAVSDGVIKVFNDMKVRKSSTPEEVKKRKKAVLFCLSEDKKNIILEEGKEILVGDV 60
MASGV V+D VIKVFNDMKVRKSST EE+KKRKKAVLFCLS+DK+ II+EE K+ILVGD+
Sbjct: 1 MASGVTVNDEVIKVFNDMKVRKSSTQEEIKKRKKAVLFCLSDDKRQIIVEEAKQILVGDI 60
Query: 61 GQTVDDPYATFVKMLPDKDCRYALYDATYETKESKKEDLVFIFWAPESAPLKSKMIYASS 120
G TV+DPY +FVK+LP DCRYALYDATYETKESKKEDLVFIFWAPESAPLKSKMIYASS
Sbjct: 61 GDTVEDPYTSFVKLLPLNDCRYALYDATYETKESKKEDLVFIFWAPESAPLKSKMIYASS 120
Query: 121 KDAIKKKLTGIKHELQANCYEEVKDRCTLAEKLGGSAVISLEGKPL 166
KDAIKKK TGIKHE Q N +++KDR TL EKLGG+ V+SLEGKPL
Sbjct: 121 KDAIKKKFTGIKHEWQVNGLDDIKDRSTLGEKLGGNVVVSLEGKPL 166
>gi|5802966 destrin isoform a [Homo sapiens]
Length = 165
Score = 237 bits (605), Expect = 3e-63
Identities = 118/166 (71%), Positives = 139/166 (83%), Gaps = 1/166 (0%)
Query: 1 MASGVAVSDGVIKVFNDMKVRKSSTPEEVKKRKKAVLFCLSEDKKNIILEEGKEILVGDV 60
MASGV V+D V ++F DMKVRK STPEE+KKRKKAV+FCLS DKK II+EEGKEILVGDV
Sbjct: 1 MASGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLSADKKCIIVEEGKEILVGDV 60
Query: 61 GQTVDDPYATFVKMLPDKDCRYALYDATYETKESKKEDLVFIFWAPESAPLKSKMIYASS 120
G T+ DP+ FV MLP+KDCRYALYDA++ETKES+KE+L+F WAPE APLKSKMIYASS
Sbjct: 61 GVTITDPFKHFVGMLPEKDCRYALYDASFETKESRKEELMFFLWAPELAPLKSKMIYASS 120
Query: 121 KDAIKKKLTGIKHELQANCYEEVKDRCTLAEKLGGSAVISLEGKPL 166
KDAIKKK GIKHE QAN E++ C +AEKLGGS +++ EG P+
Sbjct: 121 KDAIKKKFQGIKHECQANGPEDLNRAC-IAEKLGGSLIVAFEGCPV 165
>gi|58530848 destrin isoform b [Homo sapiens]
Length = 148
Score = 218 bits (556), Expect = 1e-57
Identities = 108/149 (72%), Positives = 126/149 (84%), Gaps = 1/149 (0%)
Query: 18 MKVRKSSTPEEVKKRKKAVLFCLSEDKKNIILEEGKEILVGDVGQTVDDPYATFVKMLPD 77
MKVRK STPEE+KKRKKAV+FCLS DKK II+EEGKEILVGDVG T+ DP+ FV MLP+
Sbjct: 1 MKVRKCSTPEEIKKRKKAVIFCLSADKKCIIVEEGKEILVGDVGVTITDPFKHFVGMLPE 60
Query: 78 KDCRYALYDATYETKESKKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKLTGIKHELQA 137
KDCRYALYDA++ETKES+KE+L+F WAPE APLKSKMIYASSKDAIKKK GIKHE QA
Sbjct: 61 KDCRYALYDASFETKESRKEELMFFLWAPELAPLKSKMIYASSKDAIKKKFQGIKHECQA 120
Query: 138 NCYEEVKDRCTLAEKLGGSAVISLEGKPL 166
N E++ C +AEKLGGS +++ EG P+
Sbjct: 121 NGPEDLNRAC-IAEKLGGSLIVAFEGCPV 148
>gi|169165083 PREDICTED: similar to Destrin (actin depolymerizing
factor) [Homo sapiens]
Length = 252
Score = 167 bits (422), Expect = 5e-42
Identities = 92/162 (56%), Positives = 113/162 (69%), Gaps = 9/162 (5%)
Query: 3 SGVAVSDGVIKVFNDMKVRKSSTPEEVKKRKKAVLFCLSEDKKNIILEEGKEILVGDVGQ 62
SGV V+D V +F D+KV K ST EE+KKRKK V+FCLS DKK II+EEGKEI GD+G
Sbjct: 96 SGVQVADEVCHIFCDIKVHKCSTSEEIKKRKKTVIFCLSADKKCIIVEEGKEISAGDIGV 155
Query: 63 TVDDPYATFVKMLPDKDCRYALYDATYETKESKKEDLVFIF-WAPESAPLKSKMIYASSK 121
T+ P+ FV MLP+KDC YALYDA++ETK+S + V +F WAPE PLKSKMI+ S K
Sbjct: 156 TITGPFKHFVGMLPEKDCCYALYDASFETKKSGRVLFVCLFLWAPELPPLKSKMIFTSCK 215
Query: 122 DAIKKKLTGIKHELQANCYEEVKDRCTLAEKLGGSAVISLEG 163
DAIKKK QAN E++ C +AEKL G + + EG
Sbjct: 216 DAIKKK-------FQANGPEDLNWAC-IAEKLDGYLIAAFEG 249
>gi|169165465 PREDICTED: similar to Destrin (actin depolymerizing
factor) [Homo sapiens]
Length = 252
Score = 165 bits (418), Expect = 1e-41
Identities = 91/162 (56%), Positives = 113/162 (69%), Gaps = 9/162 (5%)
Query: 3 SGVAVSDGVIKVFNDMKVRKSSTPEEVKKRKKAVLFCLSEDKKNIILEEGKEILVGDVGQ 62
SGV V+D V +F D+KV K ST EE+KKRKK V+FCLS DKK II+EEGKEI GD+G
Sbjct: 96 SGVQVADEVCHIFCDIKVHKCSTSEEIKKRKKTVIFCLSADKKCIIVEEGKEISAGDIGV 155
Query: 63 TVDDPYATFVKMLPDKDCRYALYDATYETKESKKEDLVFIF-WAPESAPLKSKMIYASSK 121
++ P+ FV MLP+KDC YALYDA++ETK+S + V +F WAPE PLKSKMI+ S K
Sbjct: 156 SITGPFKHFVGMLPEKDCCYALYDASFETKKSGRVLFVCLFLWAPELPPLKSKMIFTSCK 215
Query: 122 DAIKKKLTGIKHELQANCYEEVKDRCTLAEKLGGSAVISLEG 163
DAIKKK QAN E++ C +AEKL G + + EG
Sbjct: 216 DAIKKK-------FQANGPEDLNWAC-IAEKLDGYLIAAFEG 249
>gi|113415024 PREDICTED: similar to destrin [Homo sapiens]
Length = 199
Score = 165 bits (418), Expect = 1e-41
Identities = 91/162 (56%), Positives = 113/162 (69%), Gaps = 9/162 (5%)
Query: 3 SGVAVSDGVIKVFNDMKVRKSSTPEEVKKRKKAVLFCLSEDKKNIILEEGKEILVGDVGQ 62
SGV V+D V +F D+KV K ST EE+KKRKK V+FCLS DKK II+EEGKEI GD+G
Sbjct: 43 SGVQVADEVCHIFCDIKVHKCSTSEEIKKRKKTVIFCLSADKKCIIVEEGKEISAGDIGV 102
Query: 63 TVDDPYATFVKMLPDKDCRYALYDATYETKESKKEDLVFIF-WAPESAPLKSKMIYASSK 121
++ P+ FV MLP+KDC YALYDA++ETK+S + V +F WAPE PLKSKMI+ S K
Sbjct: 103 SITGPFKHFVGMLPEKDCCYALYDASFETKKSGRVLFVCLFLWAPELPPLKSKMIFTSCK 162
Query: 122 DAIKKKLTGIKHELQANCYEEVKDRCTLAEKLGGSAVISLEG 163
DAIKKK QAN E++ C +AEKL G + + EG
Sbjct: 163 DAIKKK-------FQANGPEDLNWAC-IAEKLDGYLIAAFEG 196
>gi|239754918 PREDICTED: similar to destrin [Homo sapiens]
Length = 103
Score = 144 bits (364), Expect = 3e-35
Identities = 70/101 (69%), Positives = 84/101 (83%)
Query: 1 MASGVAVSDGVIKVFNDMKVRKSSTPEEVKKRKKAVLFCLSEDKKNIILEEGKEILVGDV 60
MASGV V+D V ++F DMKVRK STPEE+KKRKKAV+FCL D+K II+EEGKEILVGDV
Sbjct: 1 MASGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLGADEKCIIVEEGKEILVGDV 60
Query: 61 GQTVDDPYATFVKMLPDKDCRYALYDATYETKESKKEDLVF 101
G T+ P+ FV MLP+KDCR ALYDA++ETKES E+L+F
Sbjct: 61 GVTITGPFKHFVGMLPEKDCRCALYDASFETKESSTEELIF 101
>gi|239749458 PREDICTED: similar to destrin [Homo sapiens]
Length = 103
Score = 144 bits (364), Expect = 3e-35
Identities = 70/101 (69%), Positives = 84/101 (83%)
Query: 1 MASGVAVSDGVIKVFNDMKVRKSSTPEEVKKRKKAVLFCLSEDKKNIILEEGKEILVGDV 60
MASGV V+D V ++F DMKVRK STPEE+KKRKKAV+FCL D+K II+EEGKEILVGDV
Sbjct: 1 MASGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLGADEKCIIVEEGKEILVGDV 60
Query: 61 GQTVDDPYATFVKMLPDKDCRYALYDATYETKESKKEDLVF 101
G T+ P+ FV MLP+KDCR ALYDA++ETKES E+L+F
Sbjct: 61 GVTITGPFKHFVGMLPEKDCRCALYDASFETKESSTEELIF 101
>gi|239743590 PREDICTED: hypothetical protein XP_002342890 [Homo
sapiens]
Length = 103
Score = 144 bits (364), Expect = 3e-35
Identities = 70/101 (69%), Positives = 84/101 (83%)
Query: 1 MASGVAVSDGVIKVFNDMKVRKSSTPEEVKKRKKAVLFCLSEDKKNIILEEGKEILVGDV 60
MASGV V+D V ++F DMKVRK STPEE+KKRKKAV+FCL D+K II+EEGKEILVGDV
Sbjct: 1 MASGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLGADEKCIIVEEGKEILVGDV 60
Query: 61 GQTVDDPYATFVKMLPDKDCRYALYDATYETKESKKEDLVF 101
G T+ P+ FV MLP+KDCR ALYDA++ETKES E+L+F
Sbjct: 61 GVTITGPFKHFVGMLPEKDCRCALYDASFETKESSTEELIF 101
>gi|40068475 twinfilin 1 [Homo sapiens]
Length = 384
Score = 45.4 bits (106), Expect = 2e-05
Identities = 28/99 (28%), Positives = 56/99 (56%), Gaps = 8/99 (8%)
Query: 51 EGKEILVGDVGQTVDD---PYATFV-KMLPDKDCRYALYDATYETKESKKEDLVFIFWAP 106
E +++++G Q D Y +FV +L DK Y L+ +++ ++ + +FI W+P
Sbjct: 67 ENEQLVIGSYSQPSDSWDKDYDSFVLPLLEDKQPCYILF--RLDSQNAQGYEWIFIAWSP 124
Query: 107 ESAPLKSKMIYASSKDAIKKKLTG--IKHELQANCYEEV 143
+ + ++ KM+YA+++ +KK+ G IK E+ E+V
Sbjct: 125 DHSHVRQKMLYAATRATLKKEFGGGHIKDEVFGTVKEDV 163
>gi|6005846 twinfilin-like protein [Homo sapiens]
Length = 349
Score = 40.8 bits (94), Expect = 5e-04
Identities = 28/109 (25%), Positives = 61/109 (55%), Gaps = 12/109 (11%)
Query: 48 ILEEGKEILVG----DVGQTVDDPYATFVKMLPDKDCRYALYDATYETKESKKEDLVFIF 103
++ E +++++G VG+ D + +L + Y LY +++ ++ + +F+
Sbjct: 30 VVIEDEQLVLGASQEPVGRWDQDYDRAVLPLLDAQQPCYLLY--RLDSQNAQGFEWLFLA 87
Query: 104 WAPESAPLKSKMIYASSKDAIKKKLTG--IKHELQANCYEEVKDRCTLA 150
W+P+++P++ KM+YA+++ +KK+ G IK EL + VKD + A
Sbjct: 88 WSPDNSPVRLKMLYAATRATVKKEFGGGHIKDEL----FGTVKDDLSFA 132
>gi|4758442 glia maturation factor, beta [Homo sapiens]
Length = 142
Score = 35.4 bits (80), Expect = 0.023
Identities = 27/107 (25%), Positives = 53/107 (49%), Gaps = 13/107 (12%)
Query: 19 KVRKSSTPEEVKKRKKAVLFCLSEDKKNIILEEGKEILVGDVGQTVDDPYATFVKMLPDK 78
K+RK +E A++ + +DK+ ++L+E E + D + D+ LP++
Sbjct: 17 KLRKFRFRKETNNA--AIIMKIDKDKRLVVLDEELEGISPD--ELKDE--------LPER 64
Query: 79 DCRYALYDATYETKESKKE-DLVFIFWAPESAPLKSKMIYASSKDAI 124
R+ +Y Y+ + + L FIF +P + +M+YA SK+ +
Sbjct: 65 QPRFIVYSYKYQHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNKL 111
>gi|4758440 glia maturation factor, gamma [Homo sapiens]
Length = 142
Score = 30.8 bits (68), Expect = 0.56
Identities = 22/92 (23%), Positives = 46/92 (50%), Gaps = 13/92 (14%)
Query: 35 AVLFCLSEDKKNIILEEGKEILVGDVGQTVDDPYATFVKM-LPDKDCRYALYDATYETKE 93
A++ + +D++ ++LEE + + + +KM LP++ R+ +Y Y +
Sbjct: 31 AIIMKVDKDRQMVVLEEEFQNISPEE-----------LKMELPERQPRFVVYSYKYVHDD 79
Query: 94 SKKE-DLVFIFWAPESAPLKSKMIYASSKDAI 124
+ L FIF +P + +M+YA SK+ +
Sbjct: 80 GRVSYPLCFIFSSPVGCKPEQQMMYAGSKNRL 111
>gi|56549113 debranching enzyme homolog 1 [Homo sapiens]
Length = 544
Score = 30.0 bits (66), Expect = 0.95
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 82 YALYDATYETKESKKEDLVFI---FW-APESAPLKSKMIYASSKDAIKKKLTGIKHELQA 137
Y YD + T +DL+ + W PE+ L ++ Y+++++ +K+ L + H+L+
Sbjct: 278 YLEYDIEWLTILRATDDLINVTGRLWNMPENNGLHARWDYSATEEGMKEVLEKLNHDLKV 337
Query: 138 NCYEEVKDRC 147
C V C
Sbjct: 338 PCNFSVTAAC 347
>gi|148596984 golgi autoantigen, golgin subfamily b, macrogolgin (with
transmembrane signal), 1 [Homo sapiens]
Length = 3259
Score = 29.6 bits (65), Expect = 1.2
Identities = 32/137 (23%), Positives = 61/137 (44%), Gaps = 19/137 (13%)
Query: 27 EEVKKRKKAVLFCLSEDKKNIILEEGKEILVGDVGQTVDDPYATFVKMLPDKDCRYALYD 86
EE+K++ + F S+ +K + LEE + L +V D K+C L
Sbjct: 1672 EEMKEKMRK--FAKSKQQKILELEEENDRLRAEVHPAGDTA----------KECMETLLS 1719
Query: 87 ATYETKESKKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKLTGIKHELQANCYEEVKDR 146
+ S KE+L + E+ K + + S KD++ +++ +KH+++ N ++
Sbjct: 1720 SN----ASMKEELERVKMEYETLSKKFQSLM-SEKDSLSEEVQDLKHQIEGNVSKQANLE 1774
Query: 147 CTLAEKLGGSAVISLEG 163
T EK ++ EG
Sbjct: 1775 AT--EKHDNQTNVTEEG 1789
>gi|24308241 zinc finger and BTB domain containing 2 [Homo sapiens]
Length = 514
Score = 27.3 bits (59), Expect = 6.1
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
Query: 24 STPEEVKKRKKAVLFCLSEDKKNIILEEGKEILVGDVGQTVDDP 67
STP EV K C +++ L+EG+ IL+G V +P
Sbjct: 458 STPNEVVKHS-----CQNQNSDVFALDEGRSILLGSGDSEVTEP 496
>gi|31542743 EF-hand domain (C-terminal) containing 2 [Homo sapiens]
Length = 749
Score = 26.9 bits (58), Expect = 8.0
Identities = 14/60 (23%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 80 CRYALYDATYETKESKKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKLTGIKHELQANC 139
C + L+D + ++E ++ F ++ +K + ++S +DA+K L + +L NC
Sbjct: 231 CFFCLWDDSVSMFGDRRELILHYFLCDDTIEIKELLPHSSGRDALKMFLR--RSKLPKNC 288
>gi|126157508 N-acetylated alpha-linked acidic dipeptidase 2 [Homo
sapiens]
Length = 795
Score = 26.9 bits (58), Expect = 8.0
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 59 DVGQTVDDPYATF-VKMLPDKDCRYALYDATYETKESKKEDLVFIFWAPESAPLKSKMI 116
D+ +TV+ + TF V + P D Y + E+ + +L + P SAPL +K+I
Sbjct: 333 DLPKTVNPSHDTFMVSLNPGGDPSTPGYPSVDESFRQSRSNLTSLLVQPISAPLVAKLI 391
>gi|72534670 phospholipase A2-activating protein [Homo sapiens]
Length = 795
Score = 26.9 bits (58), Expect = 8.0
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 5 VAVSDGVIKVFNDMKVRKSSTPEEVKKRKKAVLFCLSEDKKNIILEEGKEILVG 58
V SDG+I+VF + + R +S EE+K +K + + K + + E L G
Sbjct: 287 VGASDGIIRVFTESEDRTASA-EEIKAFEKELSHATIDSKTGDLGDINAEQLPG 339
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.132 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,911,776
Number of Sequences: 37866
Number of extensions: 235661
Number of successful extensions: 608
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 589
Number of HSP's gapped (non-prelim): 21
length of query: 166
length of database: 18,247,518
effective HSP length: 95
effective length of query: 71
effective length of database: 14,650,248
effective search space: 1040167608
effective search space used: 1040167608
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.