Search of human proteins with 5031593

Search of human proteins with 5031593

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|5031593 actin related protein 2/3 complex subunit 5 [Homo
sapiens]
         (151 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|5031593 actin related protein 2/3 complex subunit 5 [Homo sap...   296   3e-81
gi|13569956 actin related protein 2/3 complex, subunit 5-like [H...   211   1e-55
gi|14249464 zinc finger and BTB domain containing 45 [Homo sapiens]    32   0.16 
gi|24497618 ATPase family, AAA domain containing 2 [Homo sapiens]      31   0.35 
gi|239752832 PREDICTED: similar to SET translocation [Homo sapiens]    30   1.0  
gi|239747380 PREDICTED: similar to SET translocation [Homo sapiens]    30   1.0  
gi|239741205 PREDICTED: similar to SET translocation [Homo sapiens]    30   1.0  
gi|34878844 tripartite motif-containing 55 isoform 3 [Homo sapiens]    28   3.0  
gi|34878836 tripartite motif-containing 55 isoform 1 [Homo sapiens]    28   3.0  
gi|34878821 tripartite motif-containing 55 isoform 2 [Homo sapiens]    28   3.0  
gi|91718902 myeloid/lymphoid or mixed-lineage leukemia 3 [Homo s...    28   3.9  
gi|149158690 HLA-B associated transcript-2 [Homo sapiens]              28   3.9  
gi|109715835 HEAT repeat containing 6 [Homo sapiens]                   28   3.9  
gi|118498345 AT-binding transcription factor 1 [Homo sapiens]          27   5.0  
gi|92859575 methyltransferase like 5 [Homo sapiens]                    27   5.0  
gi|4826724 zygin 1 isoform 1 [Homo sapiens]                            27   8.6  

>gi|5031593 actin related protein 2/3 complex subunit 5 [Homo
           sapiens]
          Length = 151

 Score =  296 bits (759), Expect = 3e-81
 Identities = 151/151 (100%), Positives = 151/151 (100%)

Query: 1   MSKNTVSSARFRKVDVDEYDENKFVDEEDGGDGQAGPDEGEVDSCLRQGNMTAALQAALK 60
           MSKNTVSSARFRKVDVDEYDENKFVDEEDGGDGQAGPDEGEVDSCLRQGNMTAALQAALK
Sbjct: 1   MSKNTVSSARFRKVDVDEYDENKFVDEEDGGDGQAGPDEGEVDSCLRQGNMTAALQAALK 60

Query: 61  NPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESPSDN 120
           NPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESPSDN
Sbjct: 61  NPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESPSDN 120

Query: 121 SSAMLLQWHEKALAAGGVGSIVRVLTARKTV 151
           SSAMLLQWHEKALAAGGVGSIVRVLTARKTV
Sbjct: 121 SSAMLLQWHEKALAAGGVGSIVRVLTARKTV 151


>gi|13569956 actin related protein 2/3 complex, subunit 5-like [Homo
           sapiens]
          Length = 153

 Score =  211 bits (538), Expect = 1e-55
 Identities = 106/154 (68%), Positives = 131/154 (85%), Gaps = 4/154 (2%)

Query: 1   MSKNTVSSARFRKVDVDEYDENKFVDEEDGGDGQA---GPDEGEVDSCLRQGNMTAALQA 57
           M++NT+SS RFR+VD+DE+DENKFVDE++     A   GPD  EVD  LRQG+M  A  A
Sbjct: 1   MARNTLSS-RFRRVDIDEFDENKFVDEQEEAAAAAAEPGPDPSEVDGLLRQGDMLRAFHA 59

Query: 58  ALKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESP 117
           AL+N P+NTK+QAVK+RA  +VLKVL +FK+++IE+AVQSLD+NGVDLLMKYIYKGFE P
Sbjct: 60  ALRNSPVNTKNQAVKERAQGVVLKVLTNFKSSEIEQAVQSLDRNGVDLLMKYIYKGFEKP 119

Query: 118 SDNSSAMLLQWHEKALAAGGVGSIVRVLTARKTV 151
           ++NSSA+LLQWHEKALA GG+GSI+RVLTARKTV
Sbjct: 120 TENSSAVLLQWHEKALAVGGLGSIIRVLTARKTV 153


>gi|14249464 zinc finger and BTB domain containing 45 [Homo sapiens]
          Length = 511

 Score = 32.3 bits (72), Expect = 0.16
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 4/56 (7%)

Query: 15  DVDEYDENKFVDEEDGGDGQ-AGPDEGEVDSCL---RQGNMTAALQAALKNPPINT 66
           D  + D+ +  DE DG DG+  GP EG+          G +TAA  +A + PP  T
Sbjct: 205 DRGDEDDEESDDETDGEDGEGGGPGEGQAPPSFPDCAAGFLTAAADSACEEPPAPT 260


>gi|24497618 ATPase family, AAA domain containing 2 [Homo sapiens]
          Length = 1390

 Score = 31.2 bits (69), Expect = 0.35
 Identities = 17/48 (35%), Positives = 25/48 (52%)

Query: 15  DVDEYDENKFVDEEDGGDGQAGPDEGEVDSCLRQGNMTAALQAALKNP 62
           D D+ D++   D+ED  D + G +E +    LRQ   T   QA L+ P
Sbjct: 265 DDDDDDDDDDDDDEDDEDEEDGEEENQKRYYLRQRKATVYYQAPLEKP 312


>gi|239752832 PREDICTED: similar to SET translocation [Homo sapiens]
          Length = 302

 Score = 29.6 bits (65), Expect = 1.0
 Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 1/30 (3%)

Query: 15  DVDEYDENKFVDEEDGGDGQAG-PDEGEVD 43
           D+DE DE++  ++ED  +G+ G  DEGE D
Sbjct: 273 DIDEGDEDEGEEDEDDDEGEEGEEDEGEDD 302


>gi|239747380 PREDICTED: similar to SET translocation [Homo sapiens]
          Length = 302

 Score = 29.6 bits (65), Expect = 1.0
 Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 1/30 (3%)

Query: 15  DVDEYDENKFVDEEDGGDGQAG-PDEGEVD 43
           D+DE DE++  ++ED  +G+ G  DEGE D
Sbjct: 273 DIDEGDEDEGEEDEDDDEGEEGEEDEGEDD 302


>gi|239741205 PREDICTED: similar to SET translocation [Homo sapiens]
          Length = 302

 Score = 29.6 bits (65), Expect = 1.0
 Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 1/30 (3%)

Query: 15  DVDEYDENKFVDEEDGGDGQAG-PDEGEVD 43
           D+DE DE++  ++ED  +G+ G  DEGE D
Sbjct: 273 DIDEGDEDEGEEDEDDDEGEEGEEDEGEDD 302


>gi|34878844 tripartite motif-containing 55 isoform 3 [Homo sapiens]
          Length = 452

 Score = 28.1 bits (61), Expect = 3.0
 Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 3/44 (6%)

Query: 1   MSKNTVSSARFRKV--DVDEYDENKFVDEEDGGDGQAGPDEGEV 42
           M+  TV+  R  K+  ++D Y E++  +EE+GG+G+    EGEV
Sbjct: 307 MNHFTVNLNREEKIIREIDFYREDEDEEEEEGGEGEK-EGEGEV 349


>gi|34878836 tripartite motif-containing 55 isoform 1 [Homo sapiens]
          Length = 548

 Score = 28.1 bits (61), Expect = 3.0
 Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 3/44 (6%)

Query: 1   MSKNTVSSARFRKV--DVDEYDENKFVDEEDGGDGQAGPDEGEV 42
           M+  TV+  R  K+  ++D Y E++  +EE+GG+G+    EGEV
Sbjct: 307 MNHFTVNLNREEKIIREIDFYREDEDEEEEEGGEGEK-EGEGEV 349


>gi|34878821 tripartite motif-containing 55 isoform 2 [Homo sapiens]
          Length = 540

 Score = 28.1 bits (61), Expect = 3.0
 Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 3/44 (6%)

Query: 1   MSKNTVSSARFRKV--DVDEYDENKFVDEEDGGDGQAGPDEGEV 42
           M+  TV+  R  K+  ++D Y E++  +EE+GG+G+    EGEV
Sbjct: 307 MNHFTVNLNREEKIIREIDFYREDEDEEEEEGGEGEK-EGEGEV 349


>gi|91718902 myeloid/lymphoid or mixed-lineage leukemia 3 [Homo
            sapiens]
          Length = 4911

 Score = 27.7 bits (60), Expect = 3.9
 Identities = 17/61 (27%), Positives = 30/61 (49%)

Query: 27   EEDGGDGQAGPDEGEVDSCLRQGNMTAALQAALKNPPINTKSQAVKDRAGSIVLKVLISF 86
            E +   GQ  P   E +    +GN  A   ++ ++PP +  + A K  +G+ +LK L+  
Sbjct: 3724 ETESCPGQEEPKLEEQNGSKVEGNAVACPVSSAQSPPHSAGAPAAKGDSGNELLKHLLKN 3783

Query: 87   K 87
            K
Sbjct: 3784 K 3784


>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
          Length = 2157

 Score = 27.7 bits (60), Expect = 3.9
 Identities = 14/30 (46%), Positives = 17/30 (56%)

Query: 15  DVDEYDENKFVDEEDGGDGQAGPDEGEVDS 44
           +VD  ++ KF DEEDG D      EG  DS
Sbjct: 332 EVDYTEKLKFSDEEDGRDSDEEGAEGHRDS 361


>gi|109715835 HEAT repeat containing 6 [Homo sapiens]
          Length = 1181

 Score = 27.7 bits (60), Expect = 3.9
 Identities = 17/76 (22%), Positives = 34/76 (44%)

Query: 2   SKNTVSSARFRKVDVDEYDENKFVDEEDGGDGQAGPDEGEVDSCLRQGNMTAALQAALKN 61
           S+ T++  +  KV   +  + +  ++E  G+ +A P  G     L +GN        +++
Sbjct: 309 SRPTLNKKKKSKVKPKKIQQGEEEEKESSGEIEAAPVTGTGRVNLHEGNTWCPSSLGVQS 368

Query: 62  PPINTKSQAVKDRAGS 77
            P++    A KD   S
Sbjct: 369 LPLDGSGAAEKDGVSS 384


>gi|118498345 AT-binding transcription factor 1 [Homo sapiens]
          Length = 3703

 Score = 27.3 bits (59), Expect = 5.0
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)

Query: 17   DEYDENKFVDEEDGGDGQAGPDEGEVD-SCLRQGNMTA 53
            D+Y E    D     DG A P EG  D SC +   +T+
Sbjct: 3658 DDYSEESDTDLSQKSDGPASPVEGPKDPSCPKDSGLTS 3695


>gi|92859575 methyltransferase like 5 [Homo sapiens]
          Length = 209

 Score = 27.3 bits (59), Expect = 5.0
 Identities = 12/38 (31%), Positives = 17/38 (44%)

Query: 38  DEGEVDSCLRQGNMTAALQAALKNPPINTKSQAVKDRA 75
           D  + D CL    M+ +    + NPP  TK+    D A
Sbjct: 103 DMVQCDVCLLSNRMSKSFDTVIMNPPFGTKNNKGTDMA 140


>gi|4826724 zygin 1 isoform 1 [Homo sapiens]
          Length = 392

 Score = 26.6 bits (57), Expect = 8.6
 Identities = 26/110 (23%), Positives = 48/110 (43%), Gaps = 15/110 (13%)

Query: 17  DEYDENKFVDEEDGGDGQAGPDEGEVDSCLRQGNMTAALQAALKNPPINTKSQAVKDRAG 76
           D  +E + ++EEDGG+        + DS L Q      +QA  +    N   + ++  +G
Sbjct: 180 DPEEEEEVLEEEDGGE-----TSSQADSVLLQ-----EMQALTQTFNNNWSYEGLRHMSG 229

Query: 77  SIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESPSDNSSAMLL 126
           S + ++L     + +E A++   +  V  L +     FE    NS   +L
Sbjct: 230 SELTELL-----DQVEGAIRDFSEELVQQLARRDELEFEKEVKNSFITVL 274


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.311    0.129    0.353 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,159,095
Number of Sequences: 37866
Number of extensions: 197779
Number of successful extensions: 579
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 570
Number of HSP's gapped (non-prelim): 17
length of query: 151
length of database: 18,247,518
effective HSP length: 93
effective length of query: 58
effective length of database: 14,725,980
effective search space: 854106840
effective search space used: 854106840
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.