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Search of human proteins with 50263050
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|50263050 glycoprotein M6B isoform 2 [Homo sapiens]
(305 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|50263050 glycoprotein M6B isoform 2 [Homo sapiens] 635 0.0
gi|50263048 glycoprotein M6B isoform 1 [Homo sapiens] 592 e-169
gi|24307895 glycoprotein M6B isoform 3 [Homo sapiens] 529 e-150
gi|50263053 glycoprotein M6B isoform 4 [Homo sapiens] 510 e-145
gi|41349501 proteolipid protein 1 isoform 2 [Homo sapiens] 293 1e-79
gi|41349499 proteolipid protein 1 isoform 1 [Homo sapiens] 276 2e-74
gi|192449447 proteolipid protein 1 isoform 1 [Homo sapiens] 276 2e-74
gi|42476105 glycoprotein M6A isoform 3 [Homo sapiens] 253 1e-67
gi|42476108 glycoprotein M6A isoform 2 [Homo sapiens] 253 1e-67
gi|14149619 glycoprotein M6A isoform 1 [Homo sapiens] 253 1e-67
gi|52317100 olfactory receptor, family 5, subfamily A, member 1 ... 33 0.24
gi|118442843 olfactory receptor, family 2, subfamily C, member 1... 30 2.0
gi|37675280 ajuba isoform 2 [Homo sapiens] 30 2.7
gi|14249622 ajuba isoform 1 [Homo sapiens] 30 2.7
gi|111378393 sodium channel, voltage-gated, type VII, alpha [Hom... 29 4.5
gi|222144233 fibroblast growth factor receptor 2 isoform 4 precu... 29 5.9
gi|7657683 solute carrier family 7, (cationic amino acid transpo... 29 5.9
gi|7657307 LIM domains containing 1 [Homo sapiens] 29 5.9
>gi|50263050 glycoprotein M6B isoform 2 [Homo sapiens]
Length = 305
Score = 635 bits (1638), Expect = 0.0
Identities = 305/305 (100%), Positives = 305/305 (100%)
Query: 1 MKPAMETAAEENTEQSQERKVNSRAEMEIGRYHWMYPGSKNHQYHPVPTLGDRASPLSSP 60
MKPAMETAAEENTEQSQERKVNSRAEMEIGRYHWMYPGSKNHQYHPVPTLGDRASPLSSP
Sbjct: 1 MKPAMETAAEENTEQSQERKVNSRAEMEIGRYHWMYPGSKNHQYHPVPTLGDRASPLSSP 60
Query: 61 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNASDHALL 120
GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNASDHALL
Sbjct: 61 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNASDHALL 120
Query: 121 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 180
SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT
Sbjct: 121 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 180
Query: 181 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQTNGTTGVEQICVDIRQYGIIPWNAF 240
YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQTNGTTGVEQICVDIRQYGIIPWNAF
Sbjct: 181 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQTNGTTGVEQICVDIRQYGIIPWNAF 240
Query: 241 PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATTYNYAVLKFKSRED 300
PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATTYNYAVLKFKSRED
Sbjct: 241 PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATTYNYAVLKFKSRED 300
Query: 301 CCTKF 305
CCTKF
Sbjct: 301 CCTKF 305
>gi|50263048 glycoprotein M6B isoform 1 [Homo sapiens]
Length = 328
Score = 592 bits (1525), Expect = e-169
Identities = 285/298 (95%), Positives = 291/298 (97%)
Query: 1 MKPAMETAAEENTEQSQERKVNSRAEMEIGRYHWMYPGSKNHQYHPVPTLGDRASPLSSP 60
MKPAMETAAEENTEQSQERKVNSRAEMEIGRYHWMYPGSKNHQYHPVPTLGDRASPLSSP
Sbjct: 1 MKPAMETAAEENTEQSQERKVNSRAEMEIGRYHWMYPGSKNHQYHPVPTLGDRASPLSSP 60
Query: 61 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNASDHALL 120
GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNASDHALL
Sbjct: 61 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNASDHALL 120
Query: 121 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 180
SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT
Sbjct: 121 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 180
Query: 181 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQTNGTTGVEQICVDIRQYGIIPWNAF 240
YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQTNGTTGVEQICVDIRQYGIIPWNAF
Sbjct: 181 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQTNGTTGVEQICVDIRQYGIIPWNAF 240
Query: 241 PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATTYNYAVLKFKSR 298
PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIAL+ ++M + N+A LK S+
Sbjct: 241 PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALIHFLMILSSNWAYLKDASK 298
>gi|24307895 glycoprotein M6B isoform 3 [Homo sapiens]
Length = 265
Score = 529 bits (1362), Expect = e-150
Identities = 265/305 (86%), Positives = 265/305 (86%), Gaps = 40/305 (13%)
Query: 1 MKPAMETAAEENTEQSQERKVNSRAEMEIGRYHWMYPGSKNHQYHPVPTLGDRASPLSSP 60
MKPAMETAAEENTEQSQERK
Sbjct: 1 MKPAMETAAEENTEQSQERK---------------------------------------- 20
Query: 61 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNASDHALL 120
GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNASDHALL
Sbjct: 21 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNASDHALL 80
Query: 121 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 180
SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT
Sbjct: 81 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 140
Query: 181 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQTNGTTGVEQICVDIRQYGIIPWNAF 240
YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQTNGTTGVEQICVDIRQYGIIPWNAF
Sbjct: 141 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQTNGTTGVEQICVDIRQYGIIPWNAF 200
Query: 241 PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATTYNYAVLKFKSRED 300
PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATTYNYAVLKFKSRED
Sbjct: 201 PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATTYNYAVLKFKSRED 260
Query: 301 CCTKF 305
CCTKF
Sbjct: 261 CCTKF 265
>gi|50263053 glycoprotein M6B isoform 4 [Homo sapiens]
Length = 246
Score = 510 bits (1314), Expect = e-145
Identities = 245/245 (100%), Positives = 245/245 (100%)
Query: 61 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNASDHALL 120
GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNASDHALL
Sbjct: 2 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNASDHALL 61
Query: 121 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 180
SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT
Sbjct: 62 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 121
Query: 181 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQTNGTTGVEQICVDIRQYGIIPWNAF 240
YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQTNGTTGVEQICVDIRQYGIIPWNAF
Sbjct: 122 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQTNGTTGVEQICVDIRQYGIIPWNAF 181
Query: 241 PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATTYNYAVLKFKSRED 300
PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATTYNYAVLKFKSRED
Sbjct: 182 PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATTYNYAVLKFKSRED 241
Query: 301 CCTKF 305
CCTKF
Sbjct: 242 CCTKF 246
>gi|41349501 proteolipid protein 1 isoform 2 [Homo sapiens]
Length = 242
Score = 293 bits (751), Expect = 1e-79
Identities = 136/238 (57%), Positives = 173/238 (72%), Gaps = 1/238 (0%)
Query: 61 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNASDHALL 120
G ECC +CL G P+ASLVAT LCF GVALFCGCGH AL GT ++E +FS N D+ L
Sbjct: 2 GLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYFSKNYQDYEYL 61
Query: 121 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLT 180
VI QYVIYG ASFFFLYG +LLAEGFYTT AV+++ G++KTT CG+ +S FV +T
Sbjct: 62 INVIHAFQYVIYGTASFFFLYGALLLAEGFYTTGAVRQIFGDYKTTICGKGLSATFVGIT 121
Query: 181 YVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQTNGTTGVEQICVDIRQYGIIPWNAF 240
Y L V WL VF SAVPV++++N W+TC+ I P + + + +C D R YG++PWNAF
Sbjct: 122 YALTVVWLLVFACSAVPVYIYFNTWTTCQSIAFP-SKTSASIGSLCADARMYGVLPWNAF 180
Query: 241 PGKICGSALENICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATTYNYAVLKFKSR 298
PGK+CGS L +IC T EF M++HLFI A GA AT+++LL +M+A TYN+AVLK R
Sbjct: 181 PGKVCGSNLLSICKTAEFQMTFHLFIAAFVGAAATLVSLLTFMIAATYNFAVLKLMGR 238
>gi|41349499 proteolipid protein 1 isoform 1 [Homo sapiens]
Length = 277
Score = 276 bits (705), Expect = 2e-74
Identities = 136/273 (49%), Positives = 172/273 (63%), Gaps = 36/273 (13%)
Query: 61 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNASDHALL 120
G ECC +CL G P+ASLVAT LCF GVALFCGCGH AL GT ++E +FS N D+ L
Sbjct: 2 GLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYFSKNYQDYEYL 61
Query: 121 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGM----- 175
VI QYVIYG ASFFFLYG +LLAEGFYTT AV+++ G++KTT CG+ +S
Sbjct: 62 INVIHAFQYVIYGTASFFFLYGALLLAEGFYTTGAVRQIFGDYKTTICGKGLSATVTGGQ 121
Query: 176 ------------------------------FVFLTYVLGVAWLGVFGFSAVPVFMFYNIW 205
FV +TY L V WL VF SAVPV++++N W
Sbjct: 122 KGRGSRGQHQAHSLERVCHCLGKWLGHPDKFVGITYALTVVWLLVFACSAVPVYIYFNTW 181
Query: 206 STCEVIKSPQTNGTTGVEQICVDIRQYGIIPWNAFPGKICGSALENICNTNEFYMSYHLF 265
+TC+ I P + + +C D R YG++PWNAFPGK+CGS L +IC T EF M++HLF
Sbjct: 182 TTCQSIAFPSKTSAS-IGSLCADARMYGVLPWNAFPGKVCGSNLLSICKTAEFQMTFHLF 240
Query: 266 IVACAGAGATVIALLIYMMATTYNYAVLKFKSR 298
I A GA AT+++LL +M+A TYN+AVLK R
Sbjct: 241 IAAFVGAAATLVSLLTFMIAATYNFAVLKLMGR 273
>gi|192449447 proteolipid protein 1 isoform 1 [Homo sapiens]
Length = 277
Score = 276 bits (705), Expect = 2e-74
Identities = 136/273 (49%), Positives = 172/273 (63%), Gaps = 36/273 (13%)
Query: 61 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHFSTNASDHALL 120
G ECC +CL G P+ASLVAT LCF GVALFCGCGH AL GT ++E +FS N D+ L
Sbjct: 2 GLLECCARCLVGAPFASLVATGLCFFGVALFCGCGHEALTGTEKLIETYFSKNYQDYEYL 61
Query: 121 SEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGM----- 175
VI QYVIYG ASFFFLYG +LLAEGFYTT AV+++ G++KTT CG+ +S
Sbjct: 62 INVIHAFQYVIYGTASFFFLYGALLLAEGFYTTGAVRQIFGDYKTTICGKGLSATVTGGQ 121
Query: 176 ------------------------------FVFLTYVLGVAWLGVFGFSAVPVFMFYNIW 205
FV +TY L V WL VF SAVPV++++N W
Sbjct: 122 KGRGSRGQHQAHSLERVCHCLGKWLGHPDKFVGITYALTVVWLLVFACSAVPVYIYFNTW 181
Query: 206 STCEVIKSPQTNGTTGVEQICVDIRQYGIIPWNAFPGKICGSALENICNTNEFYMSYHLF 265
+TC+ I P + + +C D R YG++PWNAFPGK+CGS L +IC T EF M++HLF
Sbjct: 182 TTCQSIAFPSKTSAS-IGSLCADARMYGVLPWNAFPGKVCGSNLLSICKTAEFQMTFHLF 240
Query: 266 IVACAGAGATVIALLIYMMATTYNYAVLKFKSR 298
I A GA AT+++LL +M+A TYN+AVLK R
Sbjct: 241 IAAFVGAAATLVSLLTFMIAATYNFAVLKLMGR 273
>gi|42476105 glycoprotein M6A isoform 3 [Homo sapiens]
Length = 267
Score = 253 bits (647), Expect = 1e-67
Identities = 125/241 (51%), Positives = 174/241 (72%), Gaps = 17/241 (7%)
Query: 61 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHF--STNASDHA 118
GCFECCIKCLGG+PYASL+ATIL ++GVALFCGCGH AL+GTV IL+ +F + A D
Sbjct: 2 GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVNILQTYFEMARTAGDTL 61
Query: 119 LLSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVF 178
+ +I + +YVIYGIA+ FF+YGI+L+ EGF+TT A+K+L+G+FK T CGRC+S F+
Sbjct: 62 DVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAWFIM 121
Query: 179 LTYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQTNGTTGVE--QICVDIRQYGIIP 236
LTY+ +AWLGV F+++PV+M++N+W+ C TT VE +C+D+RQ+GI+
Sbjct: 122 LTYLFMLAWLGVTAFTSLPVYMYFNLWTIC--------RNTTLVEGANLCLDLRQFGIVT 173
Query: 237 WNAFPGKICGSALEN---ICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATTYNYAVL 293
KIC + EN +C + E M++HLFIVA AGAGA VIA++ Y+M + N+A +
Sbjct: 174 IGE-EKKIC-TVSENFLRMCESTELNMTFHLFIVALAGAGAAVIAMVHYLMVLSANWAYV 231
Query: 294 K 294
K
Sbjct: 232 K 232
>gi|42476108 glycoprotein M6A isoform 2 [Homo sapiens]
Length = 278
Score = 253 bits (647), Expect = 1e-67
Identities = 125/241 (51%), Positives = 174/241 (72%), Gaps = 17/241 (7%)
Query: 61 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHF--STNASDHA 118
GCFECCIKCLGG+PYASL+ATIL ++GVALFCGCGH AL+GTV IL+ +F + A D
Sbjct: 13 GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVNILQTYFEMARTAGDTL 72
Query: 119 LLSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVF 178
+ +I + +YVIYGIA+ FF+YGI+L+ EGF+TT A+K+L+G+FK T CGRC+S F+
Sbjct: 73 DVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAWFIM 132
Query: 179 LTYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQTNGTTGVE--QICVDIRQYGIIP 236
LTY+ +AWLGV F+++PV+M++N+W+ C TT VE +C+D+RQ+GI+
Sbjct: 133 LTYLFMLAWLGVTAFTSLPVYMYFNLWTIC--------RNTTLVEGANLCLDLRQFGIVT 184
Query: 237 WNAFPGKICGSALEN---ICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATTYNYAVL 293
KIC + EN +C + E M++HLFIVA AGAGA VIA++ Y+M + N+A +
Sbjct: 185 IGE-EKKIC-TVSENFLRMCESTELNMTFHLFIVALAGAGAAVIAMVHYLMVLSANWAYV 242
Query: 294 K 294
K
Sbjct: 243 K 243
>gi|14149619 glycoprotein M6A isoform 1 [Homo sapiens]
Length = 278
Score = 253 bits (647), Expect = 1e-67
Identities = 125/241 (51%), Positives = 174/241 (72%), Gaps = 17/241 (7%)
Query: 61 GCFECCIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAILEQHF--STNASDHA 118
GCFECCIKCLGG+PYASL+ATIL ++GVALFCGCGH AL+GTV IL+ +F + A D
Sbjct: 13 GCFECCIKCLGGIPYASLIATILLYAGVALFCGCGHEALSGTVNILQTYFEMARTAGDTL 72
Query: 119 LLSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVF 178
+ +I + +YVIYGIA+ FF+YGI+L+ EGF+TT A+K+L+G+FK T CGRC+S F+
Sbjct: 73 DVFTMIDIFKYVIYGIAAAFFVYGILLMVEGFFTTGAIKDLYGDFKITTCGRCVSAWFIM 132
Query: 179 LTYVLGVAWLGVFGFSAVPVFMFYNIWSTCEVIKSPQTNGTTGVE--QICVDIRQYGIIP 236
LTY+ +AWLGV F+++PV+M++N+W+ C TT VE +C+D+RQ+GI+
Sbjct: 133 LTYLFMLAWLGVTAFTSLPVYMYFNLWTIC--------RNTTLVEGANLCLDLRQFGIVT 184
Query: 237 WNAFPGKICGSALEN---ICNTNEFYMSYHLFIVACAGAGATVIALLIYMMATTYNYAVL 293
KIC + EN +C + E M++HLFIVA AGAGA VIA++ Y+M + N+A +
Sbjct: 185 IGE-EKKIC-TVSENFLRMCESTELNMTFHLFIVALAGAGAAVIAMVHYLMVLSANWAYV 242
Query: 294 K 294
K
Sbjct: 243 K 243
>gi|52317100 olfactory receptor, family 5, subfamily A, member 1
[Homo sapiens]
Length = 315
Score = 33.5 bits (75), Expect = 0.24
Identities = 33/141 (23%), Positives = 60/141 (42%), Gaps = 12/141 (8%)
Query: 52 DRASPLSSPGCFEC------CIKCLGGVPYASLVATILCFSGVALFCGCGHVALAGTVAI 105
DR + +SSP + C + + G +++++ S + CG +
Sbjct: 124 DRYAAISSPLLYPTIMTQGLCTRMVVGAYVGGFLSSLIQASSIFRLHFCGPNIINHFFCD 183
Query: 106 LEQHFSTNASDHALLSEVIQLMQYVIYGIASFFFLYGIILLAEGFYTTSAVKELHGEFKT 165
L + + SD LS+V+ + V G SF L L++ G+ ++ +K E +
Sbjct: 184 LPPVLALSCSD-TFLSQVVNFLVVVTVGGTSFLQL----LISYGYIVSAVLKIPSAEGRW 238
Query: 166 TACGRCISGMFVFLTYVLGVA 186
AC C S + V +T + G A
Sbjct: 239 KACNTCASHLMV-VTLLFGTA 258
>gi|118442843 olfactory receptor, family 2, subfamily C, member 1
[Homo sapiens]
Length = 312
Score = 30.4 bits (67), Expect = 2.0
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 10/79 (12%)
Query: 137 FFFLYGIILLAEGFYTTSAVK---ELHGEFKTTACGRCISGMFVFLTYVLGVAWLGVFGF 193
+FFL + L F T+S + L G KT + G CI+ ++VFL WLG
Sbjct: 60 YFFLSNLSSLDLAFATSSVPQMLINLWGPGKTISYGGCITQLYVFL-------WLGATEC 112
Query: 194 SAVPVFMFYNIWSTCEVIK 212
+ V F + C ++
Sbjct: 113 ILLVVMAFDRYVAVCRPLR 131
>gi|37675280 ajuba isoform 2 [Homo sapiens]
Length = 121
Score = 30.0 bits (66), Expect = 2.7
Identities = 11/18 (61%), Positives = 13/18 (72%), Gaps = 2/18 (11%)
Query: 60 PGCFEC--CIKCLGGVPY 75
PGCF C C KCL G+P+
Sbjct: 7 PGCFRCIVCNKCLDGIPF 24
>gi|14249622 ajuba isoform 1 [Homo sapiens]
Length = 538
Score = 30.0 bits (66), Expect = 2.7
Identities = 11/18 (61%), Positives = 13/18 (72%), Gaps = 2/18 (11%)
Query: 60 PGCFEC--CIKCLGGVPY 75
PGCF C C KCL G+P+
Sbjct: 424 PGCFRCIVCNKCLDGIPF 441
>gi|111378393 sodium channel, voltage-gated, type VII, alpha [Homo
sapiens]
Length = 1682
Score = 29.3 bits (64), Expect = 4.5
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 168 CGRCISGMFVFLTYVLGVAWLGVFGFSAVPVFMFYNIWS 206
CG G+F F++Y+L ++WL + V V F NI S
Sbjct: 1466 CGNPSVGIFYFVSYIL-ISWLIIVNMYIVVVMEFLNIAS 1503
>gi|222144233 fibroblast growth factor receptor 2 isoform 4
precursor [Homo sapiens]
Length = 709
Score = 28.9 bits (63), Expect = 5.9
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 38 GSKNHQYH-PVPTLGDRASPLSSPGCFECCIKCLGGVPYASLVATIL 83
GS NH YH V G +SP E I C+G A +V T++
Sbjct: 238 GSINHTYHLDVVAPGREKEITASPDYLEIAIYCIGVFLIACMVVTVI 284
>gi|7657683 solute carrier family 7, (cationic amino acid
transporter, y+ system) member 11 [Homo sapiens]
Length = 501
Score = 28.9 bits (63), Expect = 5.9
Identities = 16/45 (35%), Positives = 20/45 (44%)
Query: 139 FLYGIILLAEGFYTTSAVKELHGEFKTTACGRCISGMFVFLTYVL 183
F YG+ A FY +E+ KT CIS V + YVL
Sbjct: 239 FYYGMYAYAGWFYLNFVTEEVENPEKTIPLAICISMAIVTIGYVL 283
>gi|7657307 LIM domains containing 1 [Homo sapiens]
Length = 676
Score = 28.9 bits (63), Expect = 5.9
Identities = 11/18 (61%), Positives = 13/18 (72%), Gaps = 2/18 (11%)
Query: 60 PGCFEC--CIKCLGGVPY 75
PGCF C C +CL GVP+
Sbjct: 558 PGCFRCVICNECLDGVPF 575
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.326 0.138 0.444
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,586,753
Number of Sequences: 37866
Number of extensions: 507440
Number of successful extensions: 1491
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1465
Number of HSP's gapped (non-prelim): 21
length of query: 305
length of database: 18,247,518
effective HSP length: 102
effective length of query: 203
effective length of database: 14,385,186
effective search space: 2920192758
effective search space used: 2920192758
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.