Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 48949851
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|48949851 syncytin precursor [Homo sapiens]
(538 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|195963433 syncytin precursor [Homo sapiens] 1110 0.0
gi|48949851 syncytin precursor [Homo sapiens] 1110 0.0
gi|46485773 syncytin 2 [Homo sapiens] 187 2e-47
gi|239753837 PREDICTED: similar to Uncharacterized protein LP905... 56 7e-08
gi|239748400 PREDICTED: hypothetical protein XP_002346661 [Homo ... 56 7e-08
gi|239742330 PREDICTED: hypothetical protein XP_002342492 [Homo ... 56 7e-08
gi|145651814 endogenous retroviral sequence 3 [Homo sapiens] 48 2e-05
gi|161019170 mucin 5AC [Homo sapiens] 34 0.39
gi|169171558 PREDICTED: hypothetical protein [Homo sapiens] 33 0.86
gi|151301154 mucin 6, gastric [Homo sapiens] 33 0.86
gi|29294649 dicer1 [Homo sapiens] 32 1.9
gi|29294651 dicer1 [Homo sapiens] 32 1.9
gi|90403586 heparanase 2 [Homo sapiens] 31 3.3
gi|32455273 WNK lysine deficient protein kinase 2 [Homo sapiens] 30 4.3
gi|110349719 titin isoform N2-A [Homo sapiens] 30 7.3
gi|154759277 monocyte to macrophage differentiation-associated 2... 30 7.3
gi|53829385 leucine rich repeat containing 37B [Homo sapiens] 30 7.3
gi|62243374 MAD1-like 1 protein [Homo sapiens] 30 7.3
gi|62243369 MAD1-like 1 protein [Homo sapiens] 30 7.3
gi|62243332 MAD1-like 1 protein [Homo sapiens] 30 7.3
>gi|195963433 syncytin precursor [Homo sapiens]
Length = 538
Score = 1110 bits (2871), Expect = 0.0
Identities = 538/538 (100%), Positives = 538/538 (100%)
Query: 1 MALPYHIFLFTVLLPSFTLTAPPPCRCMTSSSPYQEFLWRMQRPGNIDAPSYRSLSKGTP 60
MALPYHIFLFTVLLPSFTLTAPPPCRCMTSSSPYQEFLWRMQRPGNIDAPSYRSLSKGTP
Sbjct: 1 MALPYHIFLFTVLLPSFTLTAPPPCRCMTSSSPYQEFLWRMQRPGNIDAPSYRSLSKGTP 60
Query: 61 TFTAHTHMPRNCYHSATLCMHANTHYWTGKMINPSCPGGLGVTVCWTYFTQTGMSDGGGV 120
TFTAHTHMPRNCYHSATLCMHANTHYWTGKMINPSCPGGLGVTVCWTYFTQTGMSDGGGV
Sbjct: 61 TFTAHTHMPRNCYHSATLCMHANTHYWTGKMINPSCPGGLGVTVCWTYFTQTGMSDGGGV 120
Query: 121 QDQAREKHVKEVISQLTRVHGTSSPYKGLDLSKLHETLRTHTRLVSLFNTTLTGLHEVSA 180
QDQAREKHVKEVISQLTRVHGTSSPYKGLDLSKLHETLRTHTRLVSLFNTTLTGLHEVSA
Sbjct: 121 QDQAREKHVKEVISQLTRVHGTSSPYKGLDLSKLHETLRTHTRLVSLFNTTLTGLHEVSA 180
Query: 181 QNPTNCWICLPLNFRPYVSIPVPEQWNNFSTEINTTSVLVGPLVSNLEITHTSNLTCVKF 240
QNPTNCWICLPLNFRPYVSIPVPEQWNNFSTEINTTSVLVGPLVSNLEITHTSNLTCVKF
Sbjct: 181 QNPTNCWICLPLNFRPYVSIPVPEQWNNFSTEINTTSVLVGPLVSNLEITHTSNLTCVKF 240
Query: 241 SNTTYTTNSQCIRWVTPPTQIVCLPSGIFFVCGTSAYRCLNGSSESMCFLSFLVPPMTIY 300
SNTTYTTNSQCIRWVTPPTQIVCLPSGIFFVCGTSAYRCLNGSSESMCFLSFLVPPMTIY
Sbjct: 241 SNTTYTTNSQCIRWVTPPTQIVCLPSGIFFVCGTSAYRCLNGSSESMCFLSFLVPPMTIY 300
Query: 301 TEQDLYSYVISKPRNKRVPILPFVIGAGVLGALGTGIGGITTSTQFYYKLSQELNGDMER 360
TEQDLYSYVISKPRNKRVPILPFVIGAGVLGALGTGIGGITTSTQFYYKLSQELNGDMER
Sbjct: 301 TEQDLYSYVISKPRNKRVPILPFVIGAGVLGALGTGIGGITTSTQFYYKLSQELNGDMER 360
Query: 361 VADSLVTLQDQLNSLAAVVLQNRRALDLLTAERGGTCLFLGEECCYYVNQSGIVTEKVKE 420
VADSLVTLQDQLNSLAAVVLQNRRALDLLTAERGGTCLFLGEECCYYVNQSGIVTEKVKE
Sbjct: 361 VADSLVTLQDQLNSLAAVVLQNRRALDLLTAERGGTCLFLGEECCYYVNQSGIVTEKVKE 420
Query: 421 IRDRIQRRAEELRNTGPWGLLSQWMPWILPFLGPLAAIILLLLFGPCIFNLLVNFVSSRI 480
IRDRIQRRAEELRNTGPWGLLSQWMPWILPFLGPLAAIILLLLFGPCIFNLLVNFVSSRI
Sbjct: 421 IRDRIQRRAEELRNTGPWGLLSQWMPWILPFLGPLAAIILLLLFGPCIFNLLVNFVSSRI 480
Query: 481 EAVKLQMEPKMQSKTKIYRRPLDRPASPRSDVNDIKGTPPEEISAAQPLLRPNSAGSS 538
EAVKLQMEPKMQSKTKIYRRPLDRPASPRSDVNDIKGTPPEEISAAQPLLRPNSAGSS
Sbjct: 481 EAVKLQMEPKMQSKTKIYRRPLDRPASPRSDVNDIKGTPPEEISAAQPLLRPNSAGSS 538
>gi|48949851 syncytin precursor [Homo sapiens]
Length = 538
Score = 1110 bits (2871), Expect = 0.0
Identities = 538/538 (100%), Positives = 538/538 (100%)
Query: 1 MALPYHIFLFTVLLPSFTLTAPPPCRCMTSSSPYQEFLWRMQRPGNIDAPSYRSLSKGTP 60
MALPYHIFLFTVLLPSFTLTAPPPCRCMTSSSPYQEFLWRMQRPGNIDAPSYRSLSKGTP
Sbjct: 1 MALPYHIFLFTVLLPSFTLTAPPPCRCMTSSSPYQEFLWRMQRPGNIDAPSYRSLSKGTP 60
Query: 61 TFTAHTHMPRNCYHSATLCMHANTHYWTGKMINPSCPGGLGVTVCWTYFTQTGMSDGGGV 120
TFTAHTHMPRNCYHSATLCMHANTHYWTGKMINPSCPGGLGVTVCWTYFTQTGMSDGGGV
Sbjct: 61 TFTAHTHMPRNCYHSATLCMHANTHYWTGKMINPSCPGGLGVTVCWTYFTQTGMSDGGGV 120
Query: 121 QDQAREKHVKEVISQLTRVHGTSSPYKGLDLSKLHETLRTHTRLVSLFNTTLTGLHEVSA 180
QDQAREKHVKEVISQLTRVHGTSSPYKGLDLSKLHETLRTHTRLVSLFNTTLTGLHEVSA
Sbjct: 121 QDQAREKHVKEVISQLTRVHGTSSPYKGLDLSKLHETLRTHTRLVSLFNTTLTGLHEVSA 180
Query: 181 QNPTNCWICLPLNFRPYVSIPVPEQWNNFSTEINTTSVLVGPLVSNLEITHTSNLTCVKF 240
QNPTNCWICLPLNFRPYVSIPVPEQWNNFSTEINTTSVLVGPLVSNLEITHTSNLTCVKF
Sbjct: 181 QNPTNCWICLPLNFRPYVSIPVPEQWNNFSTEINTTSVLVGPLVSNLEITHTSNLTCVKF 240
Query: 241 SNTTYTTNSQCIRWVTPPTQIVCLPSGIFFVCGTSAYRCLNGSSESMCFLSFLVPPMTIY 300
SNTTYTTNSQCIRWVTPPTQIVCLPSGIFFVCGTSAYRCLNGSSESMCFLSFLVPPMTIY
Sbjct: 241 SNTTYTTNSQCIRWVTPPTQIVCLPSGIFFVCGTSAYRCLNGSSESMCFLSFLVPPMTIY 300
Query: 301 TEQDLYSYVISKPRNKRVPILPFVIGAGVLGALGTGIGGITTSTQFYYKLSQELNGDMER 360
TEQDLYSYVISKPRNKRVPILPFVIGAGVLGALGTGIGGITTSTQFYYKLSQELNGDMER
Sbjct: 301 TEQDLYSYVISKPRNKRVPILPFVIGAGVLGALGTGIGGITTSTQFYYKLSQELNGDMER 360
Query: 361 VADSLVTLQDQLNSLAAVVLQNRRALDLLTAERGGTCLFLGEECCYYVNQSGIVTEKVKE 420
VADSLVTLQDQLNSLAAVVLQNRRALDLLTAERGGTCLFLGEECCYYVNQSGIVTEKVKE
Sbjct: 361 VADSLVTLQDQLNSLAAVVLQNRRALDLLTAERGGTCLFLGEECCYYVNQSGIVTEKVKE 420
Query: 421 IRDRIQRRAEELRNTGPWGLLSQWMPWILPFLGPLAAIILLLLFGPCIFNLLVNFVSSRI 480
IRDRIQRRAEELRNTGPWGLLSQWMPWILPFLGPLAAIILLLLFGPCIFNLLVNFVSSRI
Sbjct: 421 IRDRIQRRAEELRNTGPWGLLSQWMPWILPFLGPLAAIILLLLFGPCIFNLLVNFVSSRI 480
Query: 481 EAVKLQMEPKMQSKTKIYRRPLDRPASPRSDVNDIKGTPPEEISAAQPLLRPNSAGSS 538
EAVKLQMEPKMQSKTKIYRRPLDRPASPRSDVNDIKGTPPEEISAAQPLLRPNSAGSS
Sbjct: 481 EAVKLQMEPKMQSKTKIYRRPLDRPASPRSDVNDIKGTPPEEISAAQPLLRPNSAGSS 538
>gi|46485773 syncytin 2 [Homo sapiens]
Length = 538
Score = 187 bits (476), Expect = 2e-47
Identities = 99/242 (40%), Positives = 151/242 (62%), Gaps = 29/242 (11%)
Query: 263 CLPS-GIFFVCGTSAYRCLNGSSESMCFLSFLVP-----------PMTIYTEQDLYSYVI 310
CL + G F++CG S ++CL + C + ++ P P+ IY L
Sbjct: 291 CLKTQGAFYICGQSIHQCLPSNWTGTCTIGYVTPDIFIAPGNLSLPIPIYGNSPL----- 345
Query: 311 SKPRNKR-VPILPFVIGAGVLGALGTGIGGITTSTQFYYKLSQELNGDMERVADSLVTLQ 369
PR +R + +P + G G+L GTGI GIT ++ Y +LS+E+ +++ +A +L T+Q
Sbjct: 346 --PRVRRAIHFIPLLAGLGILAGTGTGIAGITKASLTYSQLSKEIANNIDTMAKALTTMQ 403
Query: 370 DQLNSLAAVVLQNRRALDLLTAERGGTCLFLGEECCYYVNQSGIVTEKVKEIRDRIQRRA 429
+Q++SLAAVVLQNRR LD+LTA +GG CL L E+CC++VNQSG V + ++++ + +A
Sbjct: 404 EQIDSLAAVVLQNRRGLDMLTAAQGGICLALDEKCCFWVNQSGKVQDNIRQLLN----QA 459
Query: 430 EELRNTGPWGLLS-----QWMPWILPFLGPLAAIILLLLFGPCIFNLLVNFVSSRIEAVK 484
LR G L+ +W W+LP GPL +++LLLLFGPC+ NL+ FVSSR++A+K
Sbjct: 460 SSLRERATQGWLNWEGTWKWFSWVLPLTGPLVSLLLLLLFGPCLLNLITQFVSSRLQAIK 519
Query: 485 LQ 486
LQ
Sbjct: 520 LQ 521
>gi|239753837 PREDICTED: similar to Uncharacterized protein LP9056
[Homo sapiens]
Length = 563
Score = 56.2 bits (134), Expect = 7e-08
Identities = 54/229 (23%), Positives = 99/229 (43%), Gaps = 32/229 (13%)
Query: 266 SGIFFVCGTSAYRCLNGSSESMCFLSFLVPPMTIYTEQDLYSYVISKPRNKRVPILPFVI 325
SG+FF+CG Y+ C L +LVP +T Y L + I+ R+ + P
Sbjct: 295 SGLFFLCGNGVYKGFPPKWSGRCGLGYLVPSLTRYLT--LNASQITNLRSFIHKVTPHRC 352
Query: 326 GAG---------------VLGALGTGIGGITTSTQFYYKLSQELNGDMERVADSLVTLQD 370
G + AL +G +S+ + + +L Q
Sbjct: 353 TQGDTDNPPLYCNPKDNSTIRALFPSLGTYDLEKAIL-NISKAMEQEFSATKQTLEAHQS 411
Query: 371 QLNSLAAVVLQNRRALDLLTAERGGTCLFLGEECCYYVNQSGIVTEKVKEIRDRIQRRAE 430
+++SLA+ ++ LD+ T +R C +G++CC Y+N S E++K R+ +E
Sbjct: 412 KVSSLASASRKDH-VLDIPTTQRQTACGTVGKQCCLYINYS----EEIKSNIQRLHEASE 466
Query: 431 ELRNTG--PW-GLLSQWMPWILPFLGPLAAIILLLLFGPCIFNLLVNFV 476
L+N W G+ ++ W + ++L++LF C+F ++ +V
Sbjct: 467 NLKNVPLLDWQGIFAKVGDWFRSW----GYVLLIVLF--CLFIFVLIYV 509
>gi|239748400 PREDICTED: hypothetical protein XP_002346661 [Homo
sapiens]
Length = 563
Score = 56.2 bits (134), Expect = 7e-08
Identities = 54/229 (23%), Positives = 99/229 (43%), Gaps = 32/229 (13%)
Query: 266 SGIFFVCGTSAYRCLNGSSESMCFLSFLVPPMTIYTEQDLYSYVISKPRNKRVPILPFVI 325
SG+FF+CG Y+ C L +LVP +T Y L + I+ R+ + P
Sbjct: 295 SGLFFLCGNGVYKGFPPKWSGRCGLGYLVPSLTRYLT--LNASQITNLRSFIHKVTPHRC 352
Query: 326 GAG---------------VLGALGTGIGGITTSTQFYYKLSQELNGDMERVADSLVTLQD 370
G + AL +G +S+ + + +L Q
Sbjct: 353 TQGDTDNPPLYCNPKDNSTIRALFPSLGTYDLEKAIL-NISKAMEQEFSATKQTLEAHQS 411
Query: 371 QLNSLAAVVLQNRRALDLLTAERGGTCLFLGEECCYYVNQSGIVTEKVKEIRDRIQRRAE 430
+++SLA+ ++ LD+ T +R C +G++CC Y+N S E++K R+ +E
Sbjct: 412 KVSSLASASRKDH-VLDIPTTQRQTACGTVGKQCCLYINYS----EEIKSNIQRLHEASE 466
Query: 431 ELRNTG--PW-GLLSQWMPWILPFLGPLAAIILLLLFGPCIFNLLVNFV 476
L+N W G+ ++ W + ++L++LF C+F ++ +V
Sbjct: 467 NLKNVPLLDWQGIFAKVGDWFRSW----GYVLLIVLF--CLFIFVLIYV 509
>gi|239742330 PREDICTED: hypothetical protein XP_002342492 [Homo
sapiens]
Length = 563
Score = 56.2 bits (134), Expect = 7e-08
Identities = 54/229 (23%), Positives = 99/229 (43%), Gaps = 32/229 (13%)
Query: 266 SGIFFVCGTSAYRCLNGSSESMCFLSFLVPPMTIYTEQDLYSYVISKPRNKRVPILPFVI 325
SG+FF+CG Y+ C L +LVP +T Y L + I+ R+ + P
Sbjct: 295 SGLFFLCGNGVYKGFPPKWSGRCGLGYLVPSLTRYLT--LNASQITNLRSFIHKVTPHRC 352
Query: 326 GAG---------------VLGALGTGIGGITTSTQFYYKLSQELNGDMERVADSLVTLQD 370
G + AL +G +S+ + + +L Q
Sbjct: 353 TQGDTDNPPLYCNPKDNSTIRALFPSLGTYDLEKAIL-NISKAMEQEFSATKQTLEAHQS 411
Query: 371 QLNSLAAVVLQNRRALDLLTAERGGTCLFLGEECCYYVNQSGIVTEKVKEIRDRIQRRAE 430
+++SLA+ ++ LD+ T +R C +G++CC Y+N S E++K R+ +E
Sbjct: 412 KVSSLASASRKDH-VLDIPTTQRQTACGTVGKQCCLYINYS----EEIKSNIQRLHEASE 466
Query: 431 ELRNTG--PW-GLLSQWMPWILPFLGPLAAIILLLLFGPCIFNLLVNFV 476
L+N W G+ ++ W + ++L++LF C+F ++ +V
Sbjct: 467 NLKNVPLLDWQGIFAKVGDWFRSW----GYVLLIVLF--CLFIFVLIYV 509
>gi|145651814 endogenous retroviral sequence 3 [Homo sapiens]
Length = 604
Score = 48.1 bits (113), Expect = 2e-05
Identities = 52/185 (28%), Positives = 72/185 (38%), Gaps = 23/185 (12%)
Query: 265 PSGIFFVCGTSAYRCLNGSSESMCFL-----SFLVPPMT--------IYTEQDLYS---Y 308
PSG++++CG AYR L C L SF + P+ IY E S
Sbjct: 414 PSGLYWICGPQAYRQLPAKWSGACVLGTIRPSFFLMPLKQGEALGYPIYDETKRKSKRGI 473
Query: 309 VISKPRNKRVPILPFVIGAGVLGALGTGIGGITTSTQFY---YKLSQELNGDMERVADSL 365
I ++ P + G G+ G T +L L A +L
Sbjct: 474 TIGDWKDNEWPPERIIQYYGPATWAEDGMWGYRTPVYMLNRIIRLQAVLEIITNETAGAL 533
Query: 366 VTLQDQLNSLAAVVLQNRRALDLLTAERGGTC-LFLGEECCYYVNQSGIVTEKVKEIRDR 424
L Q + V+ QNR ALD L A+ G C F CC ++ G V +KEI +
Sbjct: 534 NLLAQQATKMRNVIYQNRLALDYLLAQEEGVCGKFNLTNCCLELDDEGKV---IKEITAK 590
Query: 425 IQRRA 429
IQ+ A
Sbjct: 591 IQKLA 595
>gi|161019170 mucin 5AC [Homo sapiens]
Length = 6207
Score = 33.9 bits (76), Expect = 0.39
Identities = 68/321 (21%), Positives = 109/321 (33%), Gaps = 45/321 (14%)
Query: 14 LPSFTLTAPPPCRCMTSSSPYQEFLWRMQRPGNIDAPSYRSLSKGTPTFTAHTHMPRNCY 73
LP+ TA P ++ P R P+ ++S TP+ T P +
Sbjct: 4980 LPALRSTATTPTATSFTAIPSSSLGTTWTRLSQTTTPT-ATMSTATPSST-----PETVH 5033
Query: 74 HSATLCMHANTHYWTGKMINPSCPGGLG-----VTVCWTYFTQTGMSDGGGVQDQAREKH 128
S L A T TG + PS G T T FT T S G A
Sbjct: 5034 TSTVLTATATTTGATGSVATPSSTPGTAHTTKVPTTTTTGFTATPSSSPG----TALTPP 5089
Query: 129 VKEVISQLTRVHGTSSPYKGLDLSKLHETLRTHTR---------------------LVSL 167
+S ++ +H +S+P + S + T T TR +
Sbjct: 5090 TTTPMSTMSTIHTSSTP-ETTHTSTVLTTTATMTRATNSTATPSSTLGTTRILTELTTTA 5148
Query: 168 FNTTLTGLHEVSAQNPTNCWICLPLNFRPYVSIPVPEQWNNFSTEINTTSVLVGP-LVSN 226
T TG + P WI + V +P + +T +T P +V+
Sbjct: 5149 TTTAATGSTATLSSTPGTTWILTEPSTIATVMVPT----GSTATASSTLGTAHTPKVVTT 5204
Query: 227 LEITHTSNLTCVKFSNTTYTTNSQCIRWVTPPT-QIVCLPSGIFFVCGTSAYRCLNGSSE 285
+ T+ + V S+T TT + + + PT + + S + + + + S+
Sbjct: 5205 MATMPTATASTVPSSSTVGTTRTPAVLPSSLPTFSVSTVSSSVLTTLRPTGFPSSHFSTP 5264
Query: 286 SMC--FLSFLVPPMTIYTEQD 304
C F F P IY + D
Sbjct: 5265 CFCRAFGQFFSPGEVIYNKTD 5285
>gi|169171558 PREDICTED: hypothetical protein [Homo sapiens]
Length = 303
Score = 32.7 bits (73), Expect = 0.86
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 6/69 (8%)
Query: 257 PPTQIVCLPS------GIFFVCGTSAYRCLNGSSESMCFLSFLVPPMTIYTEQDLYSYVI 310
PP ++ PS G+ C T+ C S S+ L L P +TI T Q+L S
Sbjct: 32 PPQEVPMWPSEDHGSAGLQLQCSTTGTSCWGHESSSIDVLLSLAPVITIATRQNLCSLAS 91
Query: 311 SKPRNKRVP 319
++P + P
Sbjct: 92 AEPGEQYRP 100
>gi|151301154 mucin 6, gastric [Homo sapiens]
Length = 2439
Score = 32.7 bits (73), Expect = 0.86
Identities = 58/254 (22%), Positives = 87/254 (34%), Gaps = 30/254 (11%)
Query: 18 TLTAPPPCRCMTSSSPYQEFLWRMQRPGNIDAPSYRSLSKGTPTFTAHTHMPRNCYHSAT 77
T T PPP + S + + G A S + +K + + +HT S+T
Sbjct: 1650 TGTIPPPTTLKATGSTHTAPTMTLTTSGTSQALSSLNTAKTSTSLHSHT--------SST 1701
Query: 78 LCMHANTHYWTGKMINPSCPGGLGVTVCWTYFTQTGMS-----DGGGVQDQAREKHVKEV 132
A + T NP+ G +TV + +Q+ S + H EV
Sbjct: 1702 HHAEATSTSTTNITPNPTSTGTPPMTVTTSGTSQSRSSFSTAKTSTSLHSHTSSTHHPEV 1761
Query: 133 ISQLTRVHGTSSPYKGLDLSKLHETLRTHTRLVSLFNT--TLTGLHEVSAQNPTNCWICL 190
S T + G H T T +RL + F T TG +S+ P
Sbjct: 1762 TSTSTTSITPNHTSTGTRTPVAHTTSATSSRLPTPFTTHSPPTGTTPISSTGPVTATSFQ 1821
Query: 191 PLNFRPYVSIP---VPEQWNNFSTEINTTSVLVGPLVSNLEITHTSNLTCVKFSNTTYTT 247
P S P +P +FST + T S THT + T+ +
Sbjct: 1822 TTTTYPTPSHPHTTLPTHVPSFSTSLVTPS------------THTVIIPTHTQMATSASI 1869
Query: 248 NSQCIRWVTPPTQI 261
+S + PPT I
Sbjct: 1870 HSMPTGTIPPPTTI 1883
>gi|29294649 dicer1 [Homo sapiens]
Length = 1922
Score = 31.6 bits (70), Expect = 1.9
Identities = 23/83 (27%), Positives = 33/83 (39%)
Query: 310 ISKPRNKRVPILPFVIGAGVLGALGTGIGGITTSTQFYYKLSQELNGDMERVADSLVTLQ 369
I PR +V +L + + L TG G + +LS ++ GD R V L
Sbjct: 41 IYTPRKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFSRNGKRTVFLV 100
Query: 370 DQLNSLAAVVLQNRRALDLLTAE 392
+ N +A V R DL E
Sbjct: 101 NSANQVAQQVSAVRTHSDLKVGE 123
>gi|29294651 dicer1 [Homo sapiens]
Length = 1922
Score = 31.6 bits (70), Expect = 1.9
Identities = 23/83 (27%), Positives = 33/83 (39%)
Query: 310 ISKPRNKRVPILPFVIGAGVLGALGTGIGGITTSTQFYYKLSQELNGDMERVADSLVTLQ 369
I PR +V +L + + L TG G + +LS ++ GD R V L
Sbjct: 41 IYTPRKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFSRNGKRTVFLV 100
Query: 370 DQLNSLAAVVLQNRRALDLLTAE 392
+ N +A V R DL E
Sbjct: 101 NSANQVAQQVSAVRTHSDLKVGE 123
>gi|90403586 heparanase 2 [Homo sapiens]
Length = 592
Score = 30.8 bits (68), Expect = 3.3
Identities = 27/109 (24%), Positives = 47/109 (43%), Gaps = 19/109 (17%)
Query: 278 RCLNGSSESMCFLSF--LVPPMTIYTEQDLYSYVISKPRNKRVPILPFVIGAGVLGALGT 335
R +NGS ++ L+ P+ IY+ LY I +PR + +L G + G+
Sbjct: 272 RAVNGSQLGKDYIQLKSLLQPIRIYSRASLYGPNIGRPRKNVIALLD-----GFMKVAGS 326
Query: 336 GIGGITTSTQFYYKLSQELNGDMERVADSLV-----TLQDQLNSLAAVV 379
+ +T + ++G + +V D L TL DQ+ + VV
Sbjct: 327 TVDAVTWQHCY-------IDGRVVKVMDFLKTRLLDTLSDQIRKIQKVV 368
>gi|32455273 WNK lysine deficient protein kinase 2 [Homo sapiens]
Length = 2217
Score = 30.4 bits (67), Expect = 4.3
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 501 PLDRPASPRSDVNDIKGTPPEEISAAQPLLRP 532
P D P SP V +++ TPP+ QP L P
Sbjct: 921 PTDVPPSPHHTVQNMRATPPQPALPPQPTLPP 952
>gi|110349719 titin isoform N2-A [Homo sapiens]
Length = 33423
Score = 29.6 bits (65), Expect = 7.3
Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 9/75 (12%)
Query: 199 SIPVPEQWNNFSTEINTTSVL--------VGPLVSNLEITHTSNLTCVKFSNTTYTTNSQ 250
S+P+ QW EI+T++ V V+NLE+ T+N TC K SN
Sbjct: 5263 SLPISAQWFKDGKEISTSAKYRLVCHERSVSLEVNNLELEDTANYTC-KVSNVAGDDACS 5321
Query: 251 CIRWVTPPTQIVCLP 265
I V P + P
Sbjct: 5322 GILTVKEPPSFLVKP 5336
>gi|154759277 monocyte to macrophage differentiation-associated 2
isoform 1 [Homo sapiens]
Length = 270
Score = 29.6 bits (65), Expect = 7.3
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 432 LRNTGPWGLLSQWMPWILPFLGPLAAIILLLLFGPCI 468
LR GPW +W+ WI+ +G + G C+
Sbjct: 125 LRELGPWASHMRWLVWIMASVGTIYVFFFHERTGSCV 161
>gi|53829385 leucine rich repeat containing 37B [Homo sapiens]
Length = 947
Score = 29.6 bits (65), Expect = 7.3
Identities = 31/117 (26%), Positives = 45/117 (38%), Gaps = 16/117 (13%)
Query: 421 IRDRIQRRAEELRNTGPWGLLSQWMPWILPFL-GPLAAIILLLLFGPCIFNLLVNFVSSR 479
++D +Q + L PW S +PW P P AA P F+ L SS+
Sbjct: 31 VKDPLQLTSNPLGPPEPWSSRSSHLPWESPHAPAPPAA--------PGDFDYLGPSASSQ 82
Query: 480 IEAVKLQMEPKMQSKTKIYRRPLDRPASP------RSDVNDIKGTPPEEISAAQPLL 530
+ A+ + + K + P P D+ND K TP E + PLL
Sbjct: 83 MSALPQEPTENLAPFLKELDSAGELPLGPEPFLAAHQDLND-KRTPEERLPEVVPLL 138
>gi|62243374 MAD1-like 1 protein [Homo sapiens]
Length = 718
Score = 29.6 bits (65), Expect = 7.3
Identities = 21/90 (23%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 340 ITTSTQFYYKLSQELNGDMERVADSLVTLQDQLNSLAAVVLQNRRALDLLTAERGGTCLF 399
+T+S + K Q+L ++ +V+ L+ + + + A+ + ++ + LLT ER G
Sbjct: 355 VTSSARGLEKARQQLQEELRQVSGQLLEERKKRETHEALARRLQKRVLLLTKERDGMRAI 414
Query: 400 LG--EECCYYVNQSGIVTEKVKEIRDRIQR 427
LG + S +T +++E D +Q+
Sbjct: 415 LGSYDSELTPAEYSPQLTRRMREAEDMVQK 444
>gi|62243369 MAD1-like 1 protein [Homo sapiens]
Length = 718
Score = 29.6 bits (65), Expect = 7.3
Identities = 21/90 (23%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 340 ITTSTQFYYKLSQELNGDMERVADSLVTLQDQLNSLAAVVLQNRRALDLLTAERGGTCLF 399
+T+S + K Q+L ++ +V+ L+ + + + A+ + ++ + LLT ER G
Sbjct: 355 VTSSARGLEKARQQLQEELRQVSGQLLEERKKRETHEALARRLQKRVLLLTKERDGMRAI 414
Query: 400 LG--EECCYYVNQSGIVTEKVKEIRDRIQR 427
LG + S +T +++E D +Q+
Sbjct: 415 LGSYDSELTPAEYSPQLTRRMREAEDMVQK 444
>gi|62243332 MAD1-like 1 protein [Homo sapiens]
Length = 718
Score = 29.6 bits (65), Expect = 7.3
Identities = 21/90 (23%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 340 ITTSTQFYYKLSQELNGDMERVADSLVTLQDQLNSLAAVVLQNRRALDLLTAERGGTCLF 399
+T+S + K Q+L ++ +V+ L+ + + + A+ + ++ + LLT ER G
Sbjct: 355 VTSSARGLEKARQQLQEELRQVSGQLLEERKKRETHEALARRLQKRVLLLTKERDGMRAI 414
Query: 400 LG--EECCYYVNQSGIVTEKVKEIRDRIQR 427
LG + S +T +++E D +Q+
Sbjct: 415 LGSYDSELTPAEYSPQLTRRMREAEDMVQK 444
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.135 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,158,101
Number of Sequences: 37866
Number of extensions: 1030084
Number of successful extensions: 2856
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 2829
Number of HSP's gapped (non-prelim): 38
length of query: 538
length of database: 18,247,518
effective HSP length: 107
effective length of query: 431
effective length of database: 14,195,856
effective search space: 6118413936
effective search space used: 6118413936
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.