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Search of human proteins with 48928029
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|48928029 trafficking protein particle complex 10 [Homo
sapiens]
(1259 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|48928029 trafficking protein particle complex 10 [Homo sapiens] 2544 0.0
gi|239755724 PREDICTED: hypothetical protein [Homo sapiens] 37 0.12
gi|149158696 HLA-B associated transcript-3 isoform b [Homo sapiens] 33 1.3
gi|18375632 HLA-B associated transcript-3 isoform b [Homo sapiens] 33 1.3
gi|18375630 HLA-B associated transcript-3 isoform b [Homo sapiens] 33 1.3
gi|149158692 HLA-B associated transcript-3 isoform a [Homo sapiens] 33 1.3
gi|4504333 histidine ammonia-lyase [Homo sapiens] 32 2.9
gi|110735441 ADAM metallopeptidase with thrombospondin type 1 mo... 32 2.9
gi|110624781 myosin, heavy polypeptide 13, skeletal muscle [Homo... 32 5.0
gi|33946313 ninein isoform 4 [Homo sapiens] 32 5.0
gi|33946321 ninein isoform 5 [Homo sapiens] 32 5.0
gi|148536871 ninein isoform 1 [Homo sapiens] 32 5.0
gi|148536869 ninein isoform 2 [Homo sapiens] 32 5.0
gi|4505917 exosome component 10 isoform 2 [Homo sapiens] 32 5.0
gi|50301240 exosome component 10 isoform 1 [Homo sapiens] 32 5.0
gi|110347443 TATA element modulatory factor 1 [Homo sapiens] 31 6.5
gi|33589846 membrane-associated ring finger (C3HC4) 6 [Homo sapi... 31 6.5
gi|31377846 WD repeat domain 52 [Homo sapiens] 31 6.5
gi|60097902 filaggrin [Homo sapiens] 31 8.5
>gi|48928029 trafficking protein particle complex 10 [Homo sapiens]
Length = 1259
Score = 2544 bits (6594), Expect = 0.0
Identities = 1259/1259 (100%), Positives = 1259/1259 (100%)
Query: 1 MDASEEPLPPVIYTMENKPIVTCAGDQNLFTSVYPTLSQQLPREPMEWRRSYGRAPKMIH 60
MDASEEPLPPVIYTMENKPIVTCAGDQNLFTSVYPTLSQQLPREPMEWRRSYGRAPKMIH
Sbjct: 1 MDASEEPLPPVIYTMENKPIVTCAGDQNLFTSVYPTLSQQLPREPMEWRRSYGRAPKMIH 60
Query: 61 LESNFVQFKEELLPKEGNKALLTFPFLHIYWTECCDTEVYKATVKDDLTKWQNVLKAHSS 120
LESNFVQFKEELLPKEGNKALLTFPFLHIYWTECCDTEVYKATVKDDLTKWQNVLKAHSS
Sbjct: 61 LESNFVQFKEELLPKEGNKALLTFPFLHIYWTECCDTEVYKATVKDDLTKWQNVLKAHSS 120
Query: 121 VDWLIVIVENDAKKKNKTNILPRTSIVDKIRNDFCNKQSDRCVVLSDPLKDSSRTQESWN 180
VDWLIVIVENDAKKKNKTNILPRTSIVDKIRNDFCNKQSDRCVVLSDPLKDSSRTQESWN
Sbjct: 121 VDWLIVIVENDAKKKNKTNILPRTSIVDKIRNDFCNKQSDRCVVLSDPLKDSSRTQESWN 180
Query: 181 AFLTKLRTLLLMSFTKNLGKFEDDMRTLREKRTEPGWSFCEYFMVQEELAFVFEMLQQFE 240
AFLTKLRTLLLMSFTKNLGKFEDDMRTLREKRTEPGWSFCEYFMVQEELAFVFEMLQQFE
Sbjct: 181 AFLTKLRTLLLMSFTKNLGKFEDDMRTLREKRTEPGWSFCEYFMVQEELAFVFEMLQQFE 240
Query: 241 DALVQYDELDALFSQYVVNFGAGDGANWLTFFCQPVKSWNGLILRKPIDMEKRESIQRRE 300
DALVQYDELDALFSQYVVNFGAGDGANWLTFFCQPVKSWNGLILRKPIDMEKRESIQRRE
Sbjct: 241 DALVQYDELDALFSQYVVNFGAGDGANWLTFFCQPVKSWNGLILRKPIDMEKRESIQRRE 300
Query: 301 ATLLDLRSYLFSRQCTLLLFLQRPWEVAQRALELLHNCVQELKLLEVSVPPGALDCWVFL 360
ATLLDLRSYLFSRQCTLLLFLQRPWEVAQRALELLHNCVQELKLLEVSVPPGALDCWVFL
Sbjct: 301 ATLLDLRSYLFSRQCTLLLFLQRPWEVAQRALELLHNCVQELKLLEVSVPPGALDCWVFL 360
Query: 361 SCLEVLQRIEGCCDRAQIDSNIAHTVGLWSYATEKLKSLGYLCGLVSEKGPNSEDLNRTV 420
SCLEVLQRIEGCCDRAQIDSNIAHTVGLWSYATEKLKSLGYLCGLVSEKGPNSEDLNRTV
Sbjct: 361 SCLEVLQRIEGCCDRAQIDSNIAHTVGLWSYATEKLKSLGYLCGLVSEKGPNSEDLNRTV 420
Query: 421 DLLAGLGAERPETANTAQSPYKKLKEALSSVEAFEKHYLDLSHATIEMYTSIGRIRSAKF 480
DLLAGLGAERPETANTAQSPYKKLKEALSSVEAFEKHYLDLSHATIEMYTSIGRIRSAKF
Sbjct: 421 DLLAGLGAERPETANTAQSPYKKLKEALSSVEAFEKHYLDLSHATIEMYTSIGRIRSAKF 480
Query: 481 VGKDLAEFYMRKKAPQKAEIYLQGALKNYLAEGWALPITHTRKQLAECQKHLGQIENYLQ 540
VGKDLAEFYMRKKAPQKAEIYLQGALKNYLAEGWALPITHTRKQLAECQKHLGQIENYLQ
Sbjct: 481 VGKDLAEFYMRKKAPQKAEIYLQGALKNYLAEGWALPITHTRKQLAECQKHLGQIENYLQ 540
Query: 541 TSSLLASDHHLTEEERKHFCQEILDFASQPSDSPGHKIVLPMHSFAQLRDLHFDPSNAVV 600
TSSLLASDHHLTEEERKHFCQEILDFASQPSDSPGHKIVLPMHSFAQLRDLHFDPSNAVV
Sbjct: 541 TSSLLASDHHLTEEERKHFCQEILDFASQPSDSPGHKIVLPMHSFAQLRDLHFDPSNAVV 600
Query: 601 HVGGVLCVEITMYSQMPVPVHVEQIVVNVHFSIEKNSYRKTAEWLTKHKTSNGIINFPPE 660
HVGGVLCVEITMYSQMPVPVHVEQIVVNVHFSIEKNSYRKTAEWLTKHKTSNGIINFPPE
Sbjct: 601 HVGGVLCVEITMYSQMPVPVHVEQIVVNVHFSIEKNSYRKTAEWLTKHKTSNGIINFPPE 660
Query: 661 TAPFPVSQNSLPALELYEMFERSPSDNSLNTTGIICRNVHMLLRRQESSSSLEMPSGVAL 720
TAPFPVSQNSLPALELYEMFERSPSDNSLNTTGIICRNVHMLLRRQESSSSLEMPSGVAL
Sbjct: 661 TAPFPVSQNSLPALELYEMFERSPSDNSLNTTGIICRNVHMLLRRQESSSSLEMPSGVAL 720
Query: 721 EEGAHVLRCSHVTLEPGANQITFRTQAKEPGTYTLRQLCASVGSVWFVLPHIYPIVQYDV 780
EEGAHVLRCSHVTLEPGANQITFRTQAKEPGTYTLRQLCASVGSVWFVLPHIYPIVQYDV
Sbjct: 721 EEGAHVLRCSHVTLEPGANQITFRTQAKEPGTYTLRQLCASVGSVWFVLPHIYPIVQYDV 780
Query: 781 YSQEPQLHVEPLADSLLAGIPQRVKFTVTTGHYTIKNGDSLQLSNAEAMLILCQAESRAV 840
YSQEPQLHVEPLADSLLAGIPQRVKFTVTTGHYTIKNGDSLQLSNAEAMLILCQAESRAV
Sbjct: 781 YSQEPQLHVEPLADSLLAGIPQRVKFTVTTGHYTIKNGDSLQLSNAEAMLILCQAESRAV 840
Query: 841 VYSNTREQSSEAALRIQSSDKVTSISLPVAPAYHVIEFELEVLSLPSAPALGGESDMLGM 900
VYSNTREQSSEAALRIQSSDKVTSISLPVAPAYHVIEFELEVLSLPSAPALGGESDMLGM
Sbjct: 841 VYSNTREQSSEAALRIQSSDKVTSISLPVAPAYHVIEFELEVLSLPSAPALGGESDMLGM 900
Query: 901 AEPHRKHKDKQRTGRCMVTTDHKVSIDCPWSIYSTVIALTFSVPFRTTHSLLSSGTRKYV 960
AEPHRKHKDKQRTGRCMVTTDHKVSIDCPWSIYSTVIALTFSVPFRTTHSLLSSGTRKYV
Sbjct: 901 AEPHRKHKDKQRTGRCMVTTDHKVSIDCPWSIYSTVIALTFSVPFRTTHSLLSSGTRKYV 960
Query: 961 QVCVQNLSELDFQLSDSYLVDTGDSTDLQLVPLNTQSQQPIYSKQSVFFVWELKWTEEPP 1020
QVCVQNLSELDFQLSDSYLVDTGDSTDLQLVPLNTQSQQPIYSKQSVFFVWELKWTEEPP
Sbjct: 961 QVCVQNLSELDFQLSDSYLVDTGDSTDLQLVPLNTQSQQPIYSKQSVFFVWELKWTEEPP 1020
Query: 1021 PSLHCRFSVGFSPASEEQLSISLKPYTYEFKVENFFTLYNVKAEIFPPSGMEYCRTGSLC 1080
PSLHCRFSVGFSPASEEQLSISLKPYTYEFKVENFFTLYNVKAEIFPPSGMEYCRTGSLC
Sbjct: 1021 PSLHCRFSVGFSPASEEQLSISLKPYTYEFKVENFFTLYNVKAEIFPPSGMEYCRTGSLC 1080
Query: 1081 SLEVLITRLSDLLEVDKDEALTESDEHFSTKLMYEVVDNSSNWAVCGKSCGVISMPVAAR 1140
SLEVLITRLSDLLEVDKDEALTESDEHFSTKLMYEVVDNSSNWAVCGKSCGVISMPVAAR
Sbjct: 1081 SLEVLITRLSDLLEVDKDEALTESDEHFSTKLMYEVVDNSSNWAVCGKSCGVISMPVAAR 1140
Query: 1141 ATHRVHMEVMPLFAGYLPLPDVRLFKYLPHHSAHSSQLDADSWIENDSLSVDKHGDDQPD 1200
ATHRVHMEVMPLFAGYLPLPDVRLFKYLPHHSAHSSQLDADSWIENDSLSVDKHGDDQPD
Sbjct: 1141 ATHRVHMEVMPLFAGYLPLPDVRLFKYLPHHSAHSSQLDADSWIENDSLSVDKHGDDQPD 1200
Query: 1201 SSSLKSRGSVHSACSSEHKGLPMPRLQALPAGQVFNSSSGTQVLVIPSQDDHVLEVSVT 1259
SSSLKSRGSVHSACSSEHKGLPMPRLQALPAGQVFNSSSGTQVLVIPSQDDHVLEVSVT
Sbjct: 1201 SSSLKSRGSVHSACSSEHKGLPMPRLQALPAGQVFNSSSGTQVLVIPSQDDHVLEVSVT 1259
>gi|239755724 PREDICTED: hypothetical protein [Homo sapiens]
Length = 481
Score = 37.0 bits (84), Expect = 0.12
Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 281 GLILRKPIDMEKRESIQRREATLLDLR---SYLFSRQCTLLLF--LQRPWEVAQRALELL 335
GL+LR+ + +R Q TL+ L S L+ + LL L W QR+ LL
Sbjct: 385 GLLLRRGLLGRRRFGAQPLLLTLVPLHEPWSGLWRARVLLLQLVPLHETWYGLQRSRVLL 444
Query: 336 HNCVQELKLLEVSVPPGALDCWVFLSC 362
V L L+ + +PP D W+FL C
Sbjct: 445 LQLVPLLTLILLMIPPLGRDSWIFLHC 471
>gi|149158696 HLA-B associated transcript-3 isoform b [Homo sapiens]
Length = 1126
Score = 33.5 bits (75), Expect = 1.3
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 15/87 (17%)
Query: 768 VLPHIYPIVQYDVYSQEPQLHVEPLADSLLAGIPQRVKFTVTTGHYTIKNGDSLQLSNAE 827
V P PI+Q D+ SQ PL+D+ L+G+P + + T+ G+ Q
Sbjct: 1008 VPPEWVPIIQQDIQSQRKVKPQPPLSDAYLSGMPAKRRKTM--------QGEGPQ----- 1054
Query: 828 AMLILCQAESRAVVYSNTREQSSEAAL 854
L+L +A SRA + R +S +L
Sbjct: 1055 --LLLSEAVSRAAKAAGARPLTSPESL 1079
>gi|18375632 HLA-B associated transcript-3 isoform b [Homo sapiens]
Length = 1126
Score = 33.5 bits (75), Expect = 1.3
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 15/87 (17%)
Query: 768 VLPHIYPIVQYDVYSQEPQLHVEPLADSLLAGIPQRVKFTVTTGHYTIKNGDSLQLSNAE 827
V P PI+Q D+ SQ PL+D+ L+G+P + + T+ G+ Q
Sbjct: 1008 VPPEWVPIIQQDIQSQRKVKPQPPLSDAYLSGMPAKRRKTM--------QGEGPQ----- 1054
Query: 828 AMLILCQAESRAVVYSNTREQSSEAAL 854
L+L +A SRA + R +S +L
Sbjct: 1055 --LLLSEAVSRAAKAAGARPLTSPESL 1079
>gi|18375630 HLA-B associated transcript-3 isoform b [Homo sapiens]
Length = 1126
Score = 33.5 bits (75), Expect = 1.3
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 15/87 (17%)
Query: 768 VLPHIYPIVQYDVYSQEPQLHVEPLADSLLAGIPQRVKFTVTTGHYTIKNGDSLQLSNAE 827
V P PI+Q D+ SQ PL+D+ L+G+P + + T+ G+ Q
Sbjct: 1008 VPPEWVPIIQQDIQSQRKVKPQPPLSDAYLSGMPAKRRKTM--------QGEGPQ----- 1054
Query: 828 AMLILCQAESRAVVYSNTREQSSEAAL 854
L+L +A SRA + R +S +L
Sbjct: 1055 --LLLSEAVSRAAKAAGARPLTSPESL 1079
>gi|149158692 HLA-B associated transcript-3 isoform a [Homo sapiens]
Length = 1132
Score = 33.5 bits (75), Expect = 1.3
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 15/87 (17%)
Query: 768 VLPHIYPIVQYDVYSQEPQLHVEPLADSLLAGIPQRVKFTVTTGHYTIKNGDSLQLSNAE 827
V P PI+Q D+ SQ PL+D+ L+G+P + + T+ G+ Q
Sbjct: 1014 VPPEWVPIIQQDIQSQRKVKPQPPLSDAYLSGMPAKRRKTM--------QGEGPQ----- 1060
Query: 828 AMLILCQAESRAVVYSNTREQSSEAAL 854
L+L +A SRA + R +S +L
Sbjct: 1061 --LLLSEAVSRAAKAAGARPLTSPESL 1085
>gi|4504333 histidine ammonia-lyase [Homo sapiens]
Length = 657
Score = 32.3 bits (72), Expect = 2.9
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 531 HLGQIENYLQTSSLLASDHHLTEEERKH-FCQEILD 565
H GQIE + SLL SDHH +E H FC + D
Sbjct: 358 HRGQIEVAFRFRSLLDSDHHPSEIAESHRFCDRVQD 393
>gi|110735441 ADAM metallopeptidase with thrombospondin type 1 motif,
16 preproprotein [Homo sapiens]
Length = 1224
Score = 32.3 bits (72), Expect = 2.9
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 1122 NWAVCGKSCGVISMPVAARATHRVHMEVMPLFAGYLPLP 1160
NW+ C ++CG + + T RVH + P+ A P P
Sbjct: 935 NWSACSRTCGGGAQSRPVQCTRRVHYDSEPVPASLCPQP 973
>gi|110624781 myosin, heavy polypeptide 13, skeletal muscle [Homo
sapiens]
Length = 1938
Score = 31.6 bits (70), Expect = 5.0
Identities = 38/166 (22%), Positives = 67/166 (40%), Gaps = 26/166 (15%)
Query: 414 EDLNRTVDLLAGLGA---ERPETANTAQSPYKKLKEALSSVEAFEKHYLDLSHATIEMYT 470
E+++ + +A G E +T + L+ AL VE +H + +
Sbjct: 1511 EEISDLTEQIAETGKNLQEAEKTKKLVEQEKSDLQVALEEVEGSLEHE---ESKILRVQL 1567
Query: 471 SIGRIRSA---KFVGKDLAEFYMRKKAPQKAEIYLQGALKNYLA------------EG-- 513
+ +++S K + KD E K+ Q+A LQ L + EG
Sbjct: 1568 ELSQVKSELDRKVIEKD-EEIEQLKRNSQRAAEALQSVLDAEIRSRNDALRLKKKMEGDL 1626
Query: 514 --WALPITHTRKQLAECQKHLGQIENYLQTSSLLASDHHLTEEERK 557
+ + H+ +Q+AE QKHL ++ L+ S L D + E+ K
Sbjct: 1627 NEMEIQLGHSNRQMAETQKHLRTVQGQLKDSQLHLDDALRSNEDLK 1672
>gi|33946313 ninein isoform 4 [Homo sapiens]
Length = 2096
Score = 31.6 bits (70), Expect = 5.0
Identities = 45/197 (22%), Positives = 75/197 (38%), Gaps = 32/197 (16%)
Query: 363 LEVLQRIEGCCDRAQIDSNIAHTVGLWSYATEKLKSLGYLCGLVSEKGPNSEDLNRTVDL 422
LE ++++ C D + I+ L Y L+ EK SE+LN VD
Sbjct: 1689 LEKMKQLHRCPDLSDFQQKISSV-------------LSYNEKLLKEKEALSEELNSCVDK 1735
Query: 423 LA--GLGAERPETANTAQSPYKKLKEAL-SSVEAFEKHYLDLSHATIEMYTSIGRIRSAK 479
LA L R T Q ++ +L S + A ++ +L + + R++S
Sbjct: 1736 LAKSSLLEHRIATMKQEQKSWEHQSASLKSQLVASQEKVQNLEDTVQNVNLQMSRMKS-- 1793
Query: 480 FVGKDLAEFYMRKKAPQKAEIYLQGALKNYLAEGWALPITHTRKQLAECQKHLGQIENYL 539
DL K+A ++ + L L+N + WA E H + N
Sbjct: 1794 ----DLRVTQQEKEALKQEVMSLHKQLQNAGGKSWA----------PEIATHPSGLHNQQ 1839
Query: 540 QTSSLLASDHHLTEEER 556
+ S DH + EE++
Sbjct: 1840 KRLSWDKLDHLMNEEQQ 1856
>gi|33946321 ninein isoform 5 [Homo sapiens]
Length = 2090
Score = 31.6 bits (70), Expect = 5.0
Identities = 45/197 (22%), Positives = 75/197 (38%), Gaps = 32/197 (16%)
Query: 363 LEVLQRIEGCCDRAQIDSNIAHTVGLWSYATEKLKSLGYLCGLVSEKGPNSEDLNRTVDL 422
LE ++++ C D + I+ L Y L+ EK SE+LN VD
Sbjct: 1683 LEKMKQLHRCPDLSDFQQKISSV-------------LSYNEKLLKEKEALSEELNSCVDK 1729
Query: 423 LA--GLGAERPETANTAQSPYKKLKEAL-SSVEAFEKHYLDLSHATIEMYTSIGRIRSAK 479
LA L R T Q ++ +L S + A ++ +L + + R++S
Sbjct: 1730 LAKSSLLEHRIATMKQEQKSWEHQSASLKSQLVASQEKVQNLEDTVQNVNLQMSRMKS-- 1787
Query: 480 FVGKDLAEFYMRKKAPQKAEIYLQGALKNYLAEGWALPITHTRKQLAECQKHLGQIENYL 539
DL K+A ++ + L L+N + WA E H + N
Sbjct: 1788 ----DLRVTQQEKEALKQEVMSLHKQLQNAGGKSWA----------PEIATHPSGLHNQQ 1833
Query: 540 QTSSLLASDHHLTEEER 556
+ S DH + EE++
Sbjct: 1834 KRLSWDKLDHLMNEEQQ 1850
>gi|148536871 ninein isoform 1 [Homo sapiens]
Length = 2046
Score = 31.6 bits (70), Expect = 5.0
Identities = 45/197 (22%), Positives = 75/197 (38%), Gaps = 32/197 (16%)
Query: 363 LEVLQRIEGCCDRAQIDSNIAHTVGLWSYATEKLKSLGYLCGLVSEKGPNSEDLNRTVDL 422
LE ++++ C D + I+ L Y L+ EK SE+LN VD
Sbjct: 1683 LEKMKQLHRCPDLSDFQQKISSV-------------LSYNEKLLKEKEALSEELNSCVDK 1729
Query: 423 LA--GLGAERPETANTAQSPYKKLKEAL-SSVEAFEKHYLDLSHATIEMYTSIGRIRSAK 479
LA L R T Q ++ +L S + A ++ +L + + R++S
Sbjct: 1730 LAKSSLLEHRIATMKQEQKSWEHQSASLKSQLVASQEKVQNLEDTVQNVNLQMSRMKS-- 1787
Query: 480 FVGKDLAEFYMRKKAPQKAEIYLQGALKNYLAEGWALPITHTRKQLAECQKHLGQIENYL 539
DL K+A ++ + L L+N + WA E H + N
Sbjct: 1788 ----DLRVTQQEKEALKQEVMSLHKQLQNAGGKSWA----------PEIATHPSGLHNQQ 1833
Query: 540 QTSSLLASDHHLTEEER 556
+ S DH + EE++
Sbjct: 1834 KRLSWDKLDHLMNEEQQ 1850
>gi|148536869 ninein isoform 2 [Homo sapiens]
Length = 2133
Score = 31.6 bits (70), Expect = 5.0
Identities = 45/197 (22%), Positives = 75/197 (38%), Gaps = 32/197 (16%)
Query: 363 LEVLQRIEGCCDRAQIDSNIAHTVGLWSYATEKLKSLGYLCGLVSEKGPNSEDLNRTVDL 422
LE ++++ C D + I+ L Y L+ EK SE+LN VD
Sbjct: 1683 LEKMKQLHRCPDLSDFQQKISSV-------------LSYNEKLLKEKEALSEELNSCVDK 1729
Query: 423 LA--GLGAERPETANTAQSPYKKLKEAL-SSVEAFEKHYLDLSHATIEMYTSIGRIRSAK 479
LA L R T Q ++ +L S + A ++ +L + + R++S
Sbjct: 1730 LAKSSLLEHRIATMKQEQKSWEHQSASLKSQLVASQEKVQNLEDTVQNVNLQMSRMKS-- 1787
Query: 480 FVGKDLAEFYMRKKAPQKAEIYLQGALKNYLAEGWALPITHTRKQLAECQKHLGQIENYL 539
DL K+A ++ + L L+N + WA E H + N
Sbjct: 1788 ----DLRVTQQEKEALKQEVMSLHKQLQNAGGKSWA----------PEIATHPSGLHNQQ 1833
Query: 540 QTSSLLASDHHLTEEER 556
+ S DH + EE++
Sbjct: 1834 KRLSWDKLDHLMNEEQQ 1850
>gi|4505917 exosome component 10 isoform 2 [Homo sapiens]
Length = 860
Score = 31.6 bits (70), Expect = 5.0
Identities = 18/70 (25%), Positives = 31/70 (44%)
Query: 658 PPETAPFPVSQNSLPALELYEMFERSPSDNSLNTTGIICRNVHMLLRRQESSSSLEMPSG 717
PP+ P + S+P + +F DN L TT +I V L + S + P
Sbjct: 616 PPDGYPIIPTSGSVPVQKQASLFPDEKEDNLLGTTCLIATAVITLFNEPSAEDSKKGPLT 675
Query: 718 VALEEGAHVL 727
VA ++ +++
Sbjct: 676 VAQKKAQNIM 685
>gi|50301240 exosome component 10 isoform 1 [Homo sapiens]
Length = 885
Score = 31.6 bits (70), Expect = 5.0
Identities = 18/70 (25%), Positives = 31/70 (44%)
Query: 658 PPETAPFPVSQNSLPALELYEMFERSPSDNSLNTTGIICRNVHMLLRRQESSSSLEMPSG 717
PP+ P + S+P + +F DN L TT +I V L + S + P
Sbjct: 616 PPDGYPIIPTSGSVPVQKQASLFPDEKEDNLLGTTCLIATAVITLFNEPSAEDSKKGPLT 675
Query: 718 VALEEGAHVL 727
VA ++ +++
Sbjct: 676 VAQKKAQNIM 685
>gi|110347443 TATA element modulatory factor 1 [Homo sapiens]
Length = 1093
Score = 31.2 bits (69), Expect = 6.5
Identities = 17/65 (26%), Positives = 34/65 (52%)
Query: 847 EQSSEAALRIQSSDKVTSISLPVAPAYHVIEFELEVLSLPSAPALGGESDMLGMAEPHRK 906
E E + +S KV ++SL V+ + ++ +E +S S +L E+ + + +K
Sbjct: 174 EGKHEETVNKESDMKVPTVSLKVSESVIDVKTTMESISNTSTQSLTAETKDIALEPKEQK 233
Query: 907 HKDKQ 911
H+D+Q
Sbjct: 234 HEDRQ 238
>gi|33589846 membrane-associated ring finger (C3HC4) 6 [Homo
sapiens]
Length = 910
Score = 31.2 bits (69), Expect = 6.5
Identities = 13/45 (28%), Positives = 24/45 (53%)
Query: 84 FPFLHIYWTECCDTEVYKATVKDDLTKWQNVLKAHSSVDWLIVIV 128
FP + +W + C E++ AT+KD +Q+ + WL+ +V
Sbjct: 386 FPLICGWWLDICSLEMFDATLKDRELSFQSAPGTTMFLHWLVGMV 430
>gi|31377846 WD repeat domain 52 [Homo sapiens]
Length = 982
Score = 31.2 bits (69), Expect = 6.5
Identities = 27/104 (25%), Positives = 42/104 (40%), Gaps = 22/104 (21%)
Query: 939 LTFSVPFRTTHSLLSSGTRKYVQVCVQNLSELDFQLSDSYLVDTGDSTDLQLVPLNTQSQ 998
+ + P + +L GT K + +DF S + L G + D L N + +
Sbjct: 210 IIYEYPSLRPYRVLRDGTEK-------GYAYVDFNYSGNLLASVGSNPDYTLTIWNWKEE 262
Query: 999 QPIYSKQSVFFVWELKWTEEPPPSLHCRFSVGFSPASEEQLSIS 1042
QPI ++ F E+ F V F+P EEQL+ S
Sbjct: 263 QPILRTKA--FSQEV-------------FKVTFNPDKEEQLTTS 291
>gi|60097902 filaggrin [Homo sapiens]
Length = 4061
Score = 30.8 bits (68), Expect = 8.5
Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Query: 1171 HSAHSSQLDADSWIENDSLSVDKHGDDQPDSSSLKSRGSVH--SACSSEHKGLPMPRLQA 1228
HSA SS+ EN S +Q SS+ + GS H SA SS H G+ + +
Sbjct: 2294 HSAESSRQSGTHHAENSSGGQAASSHEQARSSAGERHGSHHQQSADSSRHSGIGHGQASS 2353
Query: 1229 LPAGQVFNSSSGTQ 1242
SSG+Q
Sbjct: 2354 AVRDSGHRGSSGSQ 2367
Score = 30.8 bits (68), Expect = 8.5
Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Query: 1171 HSAHSSQLDADSWIENDSLSVDKHGDDQPDSSSLKSRGSVH--SACSSEHKGLPMPRLQA 1228
HSA SS+ EN S +Q SS+ + GS H SA SS H G+ + +
Sbjct: 3590 HSAESSRQSGTHHAENSSGGQAASSHEQARSSAGERHGSHHQQSADSSRHSGIGHGQASS 3649
Query: 1229 LPAGQVFNSSSGTQ 1242
SSG+Q
Sbjct: 3650 AVRDSGHRGSSGSQ 3663
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.132 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,381,687
Number of Sequences: 37866
Number of extensions: 2257965
Number of successful extensions: 5484
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 5445
Number of HSP's gapped (non-prelim): 50
length of query: 1259
length of database: 18,247,518
effective HSP length: 114
effective length of query: 1145
effective length of database: 13,930,794
effective search space: 15950759130
effective search space used: 15950759130
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 68 (30.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.