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Search of human proteins with 48527954
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|48527954 golgi associated, gamma adaptin ear containing, ARF
binding protein 1 isoform 3 [Homo sapiens]
(89 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|48527954 golgi associated, gamma adaptin ear containing, ARF ... 188 7e-49
gi|9558729 golgi associated, gamma adaptin ear containing, ARF b... 144 1e-35
gi|48527952 golgi associated, gamma adaptin ear containing, ARF ... 144 1e-35
gi|20336267 ADP-ribosylation factor binding protein 3 isoform lo... 95 1e-20
gi|14719400 ADP-ribosylation factor binding protein 3 isoform sh... 93 4e-20
gi|9558751 ADP-ribosylation factor binding protein 2 [Homo sapiens] 72 7e-14
gi|4507249 signal transducing adaptor molecule 1 [Homo sapiens] 35 0.017
gi|209180457 target of myb1 isoform 2 [Homo sapiens] 33 0.063
gi|209180450 target of myb1 isoform 4 [Homo sapiens] 33 0.063
gi|4885637 target of myb1 isoform 1 [Homo sapiens] 33 0.063
gi|188219625 signal transducing adaptor molecule 2 [Homo sapiens] 32 0.14
gi|4758528 hepatocyte growth factor-regulated tyrosine kinase su... 30 0.41
gi|131888135 target of myb1-like 2 isoform 3 [Homo sapiens] 30 0.41
gi|25306272 mitochondrial ribosomal protein L11 isoform b [Homo ... 30 0.41
gi|75677327 target of myb1-like 2 isoform 1 [Homo sapiens] 28 1.2
gi|150170670 piccolo isoform 2 [Homo sapiens] 27 4.5
gi|31652242 transcription factor 20 isoform 2 [Homo sapiens] 27 4.5
gi|31652244 transcription factor 20 isoform 1 [Homo sapiens] 27 4.5
gi|150378539 piccolo isoform 1 [Homo sapiens] 27 4.5
gi|51172610 Rho guanine nucleotide exchange factor (GEF) 5-like ... 26 7.7
gi|50959191 rho guanine nucleotide exchange factor 5 [Homo sapiens] 26 7.7
>gi|48527954 golgi associated, gamma adaptin ear containing, ARF
binding protein 1 isoform 3 [Homo sapiens]
Length = 89
Score = 188 bits (478), Expect = 7e-49
Identities = 89/89 (100%), Positives = 89/89 (100%)
Query: 1 MEPAMEPETLEARINRATNPLNKELDWASINGFCEQLNEDFEGPPLATRLLAHKIQSPQE 60
MEPAMEPETLEARINRATNPLNKELDWASINGFCEQLNEDFEGPPLATRLLAHKIQSPQE
Sbjct: 1 MEPAMEPETLEARINRATNPLNKELDWASINGFCEQLNEDFEGPPLATRLLAHKIQSPQE 60
Query: 61 WEAIQALTVRRGEATIRPPPCDDTKGGQD 89
WEAIQALTVRRGEATIRPPPCDDTKGGQD
Sbjct: 61 WEAIQALTVRRGEATIRPPPCDDTKGGQD 89
>gi|9558729 golgi associated, gamma adaptin ear containing, ARF
binding protein 1 isoform 1 [Homo sapiens]
Length = 639
Score = 144 bits (364), Expect = 1e-35
Identities = 69/69 (100%), Positives = 69/69 (100%)
Query: 1 MEPAMEPETLEARINRATNPLNKELDWASINGFCEQLNEDFEGPPLATRLLAHKIQSPQE 60
MEPAMEPETLEARINRATNPLNKELDWASINGFCEQLNEDFEGPPLATRLLAHKIQSPQE
Sbjct: 1 MEPAMEPETLEARINRATNPLNKELDWASINGFCEQLNEDFEGPPLATRLLAHKIQSPQE 60
Query: 61 WEAIQALTV 69
WEAIQALTV
Sbjct: 61 WEAIQALTV 69
>gi|48527952 golgi associated, gamma adaptin ear containing, ARF
binding protein 1 isoform 2 [Homo sapiens]
Length = 552
Score = 144 bits (364), Expect = 1e-35
Identities = 69/69 (100%), Positives = 69/69 (100%)
Query: 1 MEPAMEPETLEARINRATNPLNKELDWASINGFCEQLNEDFEGPPLATRLLAHKIQSPQE 60
MEPAMEPETLEARINRATNPLNKELDWASINGFCEQLNEDFEGPPLATRLLAHKIQSPQE
Sbjct: 1 MEPAMEPETLEARINRATNPLNKELDWASINGFCEQLNEDFEGPPLATRLLAHKIQSPQE 60
Query: 61 WEAIQALTV 69
WEAIQALTV
Sbjct: 61 WEAIQALTV 69
>gi|20336267 ADP-ribosylation factor binding protein 3 isoform
long [Homo sapiens]
Length = 723
Score = 94.7 bits (234), Expect = 1e-20
Identities = 42/64 (65%), Positives = 54/64 (84%)
Query: 6 EPETLEARINRATNPLNKELDWASINGFCEQLNEDFEGPPLATRLLAHKIQSPQEWEAIQ 65
E E+LE+ +N+ATNP N++ DW I GFC+Q+N++ EGP +A RLLAHKIQSPQEWEA+Q
Sbjct: 5 EGESLESWLNKATNPSNRQEDWEYIIGFCDQINKELEGPQIAVRLLAHKIQSPQEWEALQ 64
Query: 66 ALTV 69
ALTV
Sbjct: 65 ALTV 68
>gi|14719400 ADP-ribosylation factor binding protein 3 isoform
short [Homo sapiens]
Length = 690
Score = 93.2 bits (230), Expect = 4e-20
Identities = 41/63 (65%), Positives = 53/63 (84%)
Query: 6 EPETLEARINRATNPLNKELDWASINGFCEQLNEDFEGPPLATRLLAHKIQSPQEWEAIQ 65
E E+LE+ +N+ATNP N++ DW I GFC+Q+N++ EGP +A RLLAHKIQSPQEWEA+Q
Sbjct: 5 EGESLESWLNKATNPSNRQEDWEYIIGFCDQINKELEGPQIAVRLLAHKIQSPQEWEALQ 64
Query: 66 ALT 68
ALT
Sbjct: 65 ALT 67
>gi|9558751 ADP-ribosylation factor binding protein 2 [Homo
sapiens]
Length = 613
Score = 72.4 bits (176), Expect = 7e-14
Identities = 36/61 (59%), Positives = 44/61 (72%)
Query: 9 TLEARINRATNPLNKELDWASINGFCEQLNEDFEGPPLATRLLAHKIQSPQEWEAIQALT 68
+LE +N+AT+P E DW++I FCEQ+N D GP A LLAHKIQSPQE EA+ ALT
Sbjct: 25 SLELWLNKATDPSMSEQDWSAIQNFCEQVNTDPNGPTHAPWLLAHKIQSPQEKEALYALT 84
Query: 69 V 69
V
Sbjct: 85 V 85
>gi|4507249 signal transducing adaptor molecule 1 [Homo sapiens]
Length = 540
Score = 34.7 bits (78), Expect = 0.017
Identities = 16/67 (23%), Positives = 30/67 (44%)
Query: 3 PAMEPETLEARINRATNPLNKELDWASINGFCEQLNEDFEGPPLATRLLAHKIQSPQEWE 62
P + + +AT+ +N DW I C+++ + GP R + ++
Sbjct: 2 PLFATNPFDQDVEKATSEMNTAEDWGLILDICDKVGQSRTGPKDCLRSIMRRVNHKDPHV 61
Query: 63 AIQALTV 69
A+QALT+
Sbjct: 62 AMQALTL 68
>gi|209180457 target of myb1 isoform 2 [Homo sapiens]
Length = 493
Score = 32.7 bits (73), Expect = 0.063
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 13 RINRATNPLNKELDWASINGFCEQLNEDFEGPPLATRLLAHKIQSPQEW-EAIQALTV 69
RI +AT+ + DWA C+ +NE EGP A R + +I + + E + ALTV
Sbjct: 16 RIEKATDGSLQSEDWALNMEICDIINETEEGPKDALRAVKKRIVGNKNFHEVMLALTV 73
>gi|209180450 target of myb1 isoform 4 [Homo sapiens]
Length = 447
Score = 32.7 bits (73), Expect = 0.063
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 13 RINRATNPLNKELDWASINGFCEQLNEDFEGPPLATRLLAHKIQSPQEW-EAIQALTV 69
RI +AT+ + DWA C+ +NE EGP A R + +I + + E + ALTV
Sbjct: 16 RIEKATDGSLQSEDWALNMEICDIINETEEGPKDALRAVKKRIVGNKNFHEVMLALTV 73
>gi|4885637 target of myb1 isoform 1 [Homo sapiens]
Length = 492
Score = 32.7 bits (73), Expect = 0.063
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 13 RINRATNPLNKELDWASINGFCEQLNEDFEGPPLATRLLAHKIQSPQEW-EAIQALTV 69
RI +AT+ + DWA C+ +NE EGP A R + +I + + E + ALTV
Sbjct: 16 RIEKATDGSLQSEDWALNMEICDIINETEEGPKDALRAVKKRIVGNKNFHEVMLALTV 73
>gi|188219625 signal transducing adaptor molecule 2 [Homo sapiens]
Length = 525
Score = 31.6 bits (70), Expect = 0.14
Identities = 16/67 (23%), Positives = 28/67 (41%)
Query: 3 PAMEPETLEARINRATNPLNKELDWASINGFCEQLNEDFEGPPLATRLLAHKIQSPQEWE 62
P E + +ATN N DW+ I C+++ G + + ++
Sbjct: 2 PLFTANPFEQDVEKATNEYNTTEDWSLIMDICDKVGSTPNGAKDCLKAIMKRVNHKVPHV 61
Query: 63 AIQALTV 69
A+QALT+
Sbjct: 62 ALQALTL 68
>gi|4758528 hepatocyte growth factor-regulated tyrosine kinase
substrate [Homo sapiens]
Length = 777
Score = 30.0 bits (66), Expect = 0.41
Identities = 17/61 (27%), Positives = 27/61 (44%)
Query: 9 TLEARINRATNPLNKELDWASINGFCEQLNEDFEGPPLATRLLAHKIQSPQEWEAIQALT 68
T E +++AT+ L E DW SI C+ + + A + K+ A+ AL
Sbjct: 7 TFERLLDKATSQLLLETDWESILQICDLIRQGDTQAKYAVNSIKKKVNDKNPHVALYALE 66
Query: 69 V 69
V
Sbjct: 67 V 67
>gi|131888135 target of myb1-like 2 isoform 3 [Homo sapiens]
Length = 507
Score = 30.0 bits (66), Expect = 0.41
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 14 INRATNPLNKELDWASINGFCEQLNEDFEGPPLATRLLAHKIQSPQEW-EAIQALTV 69
+ +AT+ + DW C+ +NE EGP A R L ++ + + E + ALTV
Sbjct: 17 LEKATDGSLQSEDWTLNMEICDIINETEEGPKDAIRALKKRLNGNRNYREVMLALTV 73
>gi|25306272 mitochondrial ribosomal protein L11 isoform b [Homo
sapiens]
Length = 166
Score = 30.0 bits (66), Expect = 0.41
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 12 ARINRATNPLNKELDWASINGFCEQLNEDF----EGPPLATRLL 51
+++ RA L K SIN FC++ NE EG PL T++L
Sbjct: 2 SKLGRAARGLRKPERGVSINQFCKEFNERTKDIKEGIPLPTKIL 45
>gi|75677327 target of myb1-like 2 isoform 1 [Homo sapiens]
Length = 457
Score = 28.5 bits (62), Expect = 1.2
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 14 INRATNPLNKELDWASINGFCEQLNEDFEGPPLATRLLAHKIQSPQEW-EAIQALT 68
+ +AT+ + DW C+ +NE EGP A R L ++ + + E + ALT
Sbjct: 17 LEKATDGSLQSEDWTLNMEICDIINETEEGPKDAIRALKKRLNGNRNYREVMLALT 72
>gi|150170670 piccolo isoform 2 [Homo sapiens]
Length = 4935
Score = 26.6 bits (57), Expect = 4.5
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 60 EWEAIQALTVRRGEATIRPPPCDDTK 85
E +A QA TV+R E +PPP D+K
Sbjct: 1009 EPKAEQAPTVKRTETEKKPPPIKDSK 1034
>gi|31652242 transcription factor 20 isoform 2 [Homo sapiens]
Length = 1938
Score = 26.6 bits (57), Expect = 4.5
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 3 PAMEPETLEARINRATNPLNK-ELDWASINGFCEQLNEDFEGPPLATRLLAHKIQSPQEW 61
P +EP+ E ++ AT PL+K + S + +N+ G I + +E
Sbjct: 1603 PIVEPQEPEIKLKYATQPLDKTDAKNKSFYPYIHVVNKCELGAVCT-------IINAEEE 1655
Query: 62 EAIQALTVRRGEATIRPPP 80
E + + R+G+ ++ PPP
Sbjct: 1656 EQTKLVRGRKGQRSLTPPP 1674
>gi|31652244 transcription factor 20 isoform 1 [Homo sapiens]
Length = 1960
Score = 26.6 bits (57), Expect = 4.5
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 3 PAMEPETLEARINRATNPLNK-ELDWASINGFCEQLNEDFEGPPLATRLLAHKIQSPQEW 61
P +EP+ E ++ AT PL+K + S + +N+ G I + +E
Sbjct: 1603 PIVEPQEPEIKLKYATQPLDKTDAKNKSFYPYIHVVNKCELGAVCT-------IINAEEE 1655
Query: 62 EAIQALTVRRGEATIRPPP 80
E + + R+G+ ++ PPP
Sbjct: 1656 EQTKLVRGRKGQRSLTPPP 1674
>gi|150378539 piccolo isoform 1 [Homo sapiens]
Length = 5142
Score = 26.6 bits (57), Expect = 4.5
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 60 EWEAIQALTVRRGEATIRPPPCDDTK 85
E +A QA TV+R E +PPP D+K
Sbjct: 1009 EPKAEQAPTVKRTETEKKPPPIKDSK 1034
>gi|51172610 Rho guanine nucleotide exchange factor (GEF) 5-like
[Homo sapiens]
Length = 484
Score = 25.8 bits (55), Expect = 7.7
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 45 PLATRLLAHKIQSPQEWEAIQALTVRRGEATIRPP 79
P L+A +P+ WEA+ R T+ PP
Sbjct: 88 PNQESLVAEACDTPEHWEAVPQSLAGRQARTLAPP 122
>gi|50959191 rho guanine nucleotide exchange factor 5 [Homo sapiens]
Length = 1597
Score = 25.8 bits (55), Expect = 7.7
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 45 PLATRLLAHKIQSPQEWEAIQALTVRRGEATIRPP 79
P L+A +P+ WEA+ R T+ PP
Sbjct: 88 PNQESLVAEACDTPEHWEAVPQSLAGRQARTLAPP 122
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.132 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,434,727
Number of Sequences: 37866
Number of extensions: 177347
Number of successful extensions: 261
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 239
Number of HSP's gapped (non-prelim): 23
length of query: 89
length of database: 18,247,518
effective HSP length: 61
effective length of query: 28
effective length of database: 15,937,692
effective search space: 446255376
effective search space used: 446255376
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.