Search of human proteins with 13376185

Search of human proteins with 13376185

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|13376185 hypothetical protein LOC79863 [Homo sapiens]
         (343 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|13376185 hypothetical protein LOC79863 [Homo sapiens]              699   0.0  
gi|213688415 coiled-coil domain containing 66 isoform 1 [Homo sa...    31   1.4  
gi|213688413 coiled-coil domain containing 66 isoform 2 [Homo sa...    31   1.4  
gi|110347418 structural maintenance of chromosomes 2 [Homo sapiens]    31   1.8  
gi|110347425 structural maintenance of chromosomes 2 [Homo sapiens]    31   1.8  
gi|110347420 structural maintenance of chromosomes 2 [Homo sapiens]    31   1.8  
gi|4504077 glycoprotein IX (platelet) precursor [Homo sapiens]         30   2.4  
gi|194394168 centrosomal protein 27kDa isoform 2 [Homo sapiens]        30   3.1  
gi|8922430 centrosomal protein 27kDa isoform 1 [Homo sapiens]          30   3.1  
gi|119964726 insulin-like growth factor 2 receptor precursor [Ho...    30   3.1  
gi|154277118 spectrin repeat containing, nuclear envelope 1 isof...    29   5.4  
gi|23097308 spectrin repeat containing, nuclear envelope 1 isofo...    29   5.4  
gi|154277116 spectrin repeat containing, nuclear envelope 1 isof...    29   5.4  
gi|7705373 LIM domain and actin binding 1 isoform b [Homo sapiens]     29   7.0  
gi|95147335 inositol 1,4,5-triphosphate receptor, type 2 [Homo s...    28   9.1  
gi|145309302 cell division cycle 2-like 5 isoform 1 [Homo sapiens]     28   9.1  
gi|145309300 cell division cycle 2-like 5 isoform 2 [Homo sapiens]     28   9.1  

>gi|13376185 hypothetical protein LOC79863 [Homo sapiens]
          Length = 343

 Score =  699 bits (1803), Expect = 0.0
 Identities = 343/343 (100%), Positives = 343/343 (100%)

Query: 1   MWAAAGGLWRSRAGLRALFRSRDAALFPGCERGLHCSAVSCKNWLKKFASKTKKKVWYES 60
           MWAAAGGLWRSRAGLRALFRSRDAALFPGCERGLHCSAVSCKNWLKKFASKTKKKVWYES
Sbjct: 1   MWAAAGGLWRSRAGLRALFRSRDAALFPGCERGLHCSAVSCKNWLKKFASKTKKKVWYES 60

Query: 61  PSLGSHSTYKPSKLEFLMRSTSKKTRKEDHARLRALNGLLYKALTDLLCTPEVSQELYDL 120
           PSLGSHSTYKPSKLEFLMRSTSKKTRKEDHARLRALNGLLYKALTDLLCTPEVSQELYDL
Sbjct: 61  PSLGSHSTYKPSKLEFLMRSTSKKTRKEDHARLRALNGLLYKALTDLLCTPEVSQELYDL 120

Query: 121 NVELSKVSLTPDFSACRAYWKTTLSAEQNAHMEAVLQRSAAHMRHLLMSQQTLRNVPPIV 180
           NVELSKVSLTPDFSACRAYWKTTLSAEQNAHMEAVLQRSAAHMRHLLMSQQTLRNVPPIV
Sbjct: 121 NVELSKVSLTPDFSACRAYWKTTLSAEQNAHMEAVLQRSAAHMRHLLMSQQTLRNVPPIV 180

Query: 181 FVQDKGNAALAELDQLLAVADFGPRDERDNFVQNDFRDPDAPQPCGTTEPTTSSSLCGID 240
           FVQDKGNAALAELDQLLAVADFGPRDERDNFVQNDFRDPDAPQPCGTTEPTTSSSLCGID
Sbjct: 181 FVQDKGNAALAELDQLLAVADFGPRDERDNFVQNDFRDPDAPQPCGTTEPTTSSSLCGID 240

Query: 241 HEALNKQIMEYKRRKDKGLGGLVWQGQVAELTTQMQKGRKRAKPRLEQDSSLKSYLSGEE 300
           HEALNKQIMEYKRRKDKGLGGLVWQGQVAELTTQMQKGRKRAKPRLEQDSSLKSYLSGEE
Sbjct: 241 HEALNKQIMEYKRRKDKGLGGLVWQGQVAELTTQMQKGRKRAKPRLEQDSSLKSYLSGEE 300

Query: 301 VEDDLDLVGAPEYECYAPDTEELEAERGGGRTEDGHSCGASRE 343
           VEDDLDLVGAPEYECYAPDTEELEAERGGGRTEDGHSCGASRE
Sbjct: 301 VEDDLDLVGAPEYECYAPDTEELEAERGGGRTEDGHSCGASRE 343


>gi|213688415 coiled-coil domain containing 66 isoform 1 [Homo
           sapiens]
          Length = 948

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 26/82 (31%), Positives = 35/82 (42%), Gaps = 14/82 (17%)

Query: 242 EALNKQIMEYKRRKDKGLGGLVWQGQVAELTTQMQKGRKRAKPRLEQDSSLKSYLSGEEV 301
           E LNKQI + ++RK              E      KG +  +  +  DS LKSY   +  
Sbjct: 334 EELNKQIEDDRQRK-------------IEEKIIYSKGEEHDRWAMHFDS-LKSYPGSQSQ 379

Query: 302 EDDLDLVGAPEYECYAPDTEEL 323
                    PEY C +PDT+EL
Sbjct: 380 LFSQSTHKQPEYFCVSPDTQEL 401


>gi|213688413 coiled-coil domain containing 66 isoform 2 [Homo
           sapiens]
          Length = 914

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 26/82 (31%), Positives = 35/82 (42%), Gaps = 14/82 (17%)

Query: 242 EALNKQIMEYKRRKDKGLGGLVWQGQVAELTTQMQKGRKRAKPRLEQDSSLKSYLSGEEV 301
           E LNKQI + ++RK              E      KG +  +  +  DS LKSY   +  
Sbjct: 300 EELNKQIEDDRQRK-------------IEEKIIYSKGEEHDRWAMHFDS-LKSYPGSQSQ 345

Query: 302 EDDLDLVGAPEYECYAPDTEEL 323
                    PEY C +PDT+EL
Sbjct: 346 LFSQSTHKQPEYFCVSPDTQEL 367


>gi|110347418 structural maintenance of chromosomes 2 [Homo sapiens]
          Length = 1197

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 5/71 (7%)

Query: 242 EALNKQIMEYKRRKDKGLGGLVWQ-----GQVAELTTQMQKGRKRAKPRLEQDSSLKSYL 296
           +ALN +I E ++RKDK  GG++        +   + T+ Q      K  L  + S +  L
Sbjct: 275 KALNHEIEELEKRKDKETGGILRSLEDALAEAQRVNTKSQSAFDLKKKNLACEESKRKEL 334

Query: 297 SGEEVEDDLDL 307
               VED   L
Sbjct: 335 EKNMVEDSKTL 345


>gi|110347425 structural maintenance of chromosomes 2 [Homo sapiens]
          Length = 1197

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 5/71 (7%)

Query: 242 EALNKQIMEYKRRKDKGLGGLVWQ-----GQVAELTTQMQKGRKRAKPRLEQDSSLKSYL 296
           +ALN +I E ++RKDK  GG++        +   + T+ Q      K  L  + S +  L
Sbjct: 275 KALNHEIEELEKRKDKETGGILRSLEDALAEAQRVNTKSQSAFDLKKKNLACEESKRKEL 334

Query: 297 SGEEVEDDLDL 307
               VED   L
Sbjct: 335 EKNMVEDSKTL 345


>gi|110347420 structural maintenance of chromosomes 2 [Homo sapiens]
          Length = 1197

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 5/71 (7%)

Query: 242 EALNKQIMEYKRRKDKGLGGLVWQ-----GQVAELTTQMQKGRKRAKPRLEQDSSLKSYL 296
           +ALN +I E ++RKDK  GG++        +   + T+ Q      K  L  + S +  L
Sbjct: 275 KALNHEIEELEKRKDKETGGILRSLEDALAEAQRVNTKSQSAFDLKKKNLACEESKRKEL 334

Query: 297 SGEEVEDDLDL 307
               VED   L
Sbjct: 335 EKNMVEDSKTL 345


>gi|4504077 glycoprotein IX (platelet) precursor [Homo sapiens]
          Length = 177

 Score = 30.4 bits (67), Expect = 2.4
 Identities = 17/51 (33%), Positives = 23/51 (45%)

Query: 131 PDFSACRAYWKTTLSAEQNAHMEAVLQRSAAHMRHLLMSQQTLRNVPPIVF 181
           P    CRA     L  +   H    L    A  RHLL++  +L++VPP  F
Sbjct: 21  PSPCTCRALETMGLWVDCRGHGLTALPALPARTRHLLLANNSLQSVPPGAF 71


>gi|194394168 centrosomal protein 27kDa isoform 2 [Homo sapiens]
          Length = 204

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 8/59 (13%)

Query: 147 EQNAHMEAVLQRSAAHMRHLLMS--------QQTLRNVPPIVFVQDKGNAALAELDQLL 197
           ++N  +EAV  R   H+  L ++         +T+RN+P +     K N ALA++D L+
Sbjct: 88  QENLPIEAVYHRYMVHLLELAVTFIERLETHLETIRNIPHLAANLKKMNQALAKMDILV 146


>gi|8922430 centrosomal protein 27kDa isoform 1 [Homo sapiens]
          Length = 235

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 8/59 (13%)

Query: 147 EQNAHMEAVLQRSAAHMRHLLMS--------QQTLRNVPPIVFVQDKGNAALAELDQLL 197
           ++N  +EAV  R   H+  L ++         +T+RN+P +     K N ALA++D L+
Sbjct: 119 QENLPIEAVYHRYMVHLLELAVTFIERLETHLETIRNIPHLAANLKKMNQALAKMDILV 177


>gi|119964726 insulin-like growth factor 2 receptor precursor [Homo
            sapiens]
          Length = 2491

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 5/52 (9%)

Query: 97   NGLLYKALTDLLCTPEVSQELYDLNVELSKVSLTPDFSACRAYWKTTLSAEQ 148
            +GL YK++   +C PE       + + L K + T  FS     W T L+ EQ
Sbjct: 1602 SGLSYKSVISFVCRPEAGPTNRPMLISLDKQTCTLFFS-----WHTPLACEQ 1648


>gi|154277118 spectrin repeat containing, nuclear envelope 1 isoform
           4 [Homo sapiens]
          Length = 3321

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 34/152 (22%), Positives = 62/152 (40%), Gaps = 28/152 (18%)

Query: 57  WYESPSLGSHSTY---KPSKL--EFLMRSTSKKTRKEDHARLRALNGLLYKALTDLLCTP 111
           W E   + +H T      S+L  ++++  T  +  KE  + L A+   L + LT + CT 
Sbjct: 66  WIEKAKVLAHGTIAWNSASQLREQYILHQTLLEESKEIDSELEAMTEKL-QYLTSVYCTE 124

Query: 112 EVSQELYDLNVELSKV------------SLTPDFSACRAYWKTTLSAEQNAHMEAV---- 155
           ++SQ++ +L  E  ++                D     A  K   +A + A         
Sbjct: 125 KMSQQVAELGRETEELRQMIKIRLQNLQDAAKDMKKFEAELKKLQAALEQAQATLTSPEV 184

Query: 156 ----LQRSAAHMRHLLMSQQTLRNVPPIVFVQ 183
               L+   +H +HLL   ++L+  P +  VQ
Sbjct: 185 GRLSLKEQLSHRQHLLSEMESLK--PKVQAVQ 214


>gi|23097308 spectrin repeat containing, nuclear envelope 1 isoform 2
            [Homo sapiens]
          Length = 8749

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 34/152 (22%), Positives = 62/152 (40%), Gaps = 28/152 (18%)

Query: 57   WYESPSLGSHSTY---KPSKL--EFLMRSTSKKTRKEDHARLRALNGLLYKALTDLLCTP 111
            W E   + +H T      S+L  ++++  T  +  KE  + L A+   L + LT + CT 
Sbjct: 5471 WIEKAKVLAHGTIAWNSASQLREQYILHQTLLEESKEIDSELEAMTEKL-QYLTSVYCTE 5529

Query: 112  EVSQELYDLNVELSKV------------SLTPDFSACRAYWKTTLSAEQNAHMEAV---- 155
            ++SQ++ +L  E  ++                D     A  K   +A + A         
Sbjct: 5530 KMSQQVAELGRETEELRQMIKIRLQNLQDAAKDMKKFEAELKKLQAALEQAQATLTSPEV 5589

Query: 156  ----LQRSAAHMRHLLMSQQTLRNVPPIVFVQ 183
                L+   +H +HLL   ++L+  P +  VQ
Sbjct: 5590 GRLSLKEQLSHRQHLLSEMESLK--PKVQAVQ 5619


>gi|154277116 spectrin repeat containing, nuclear envelope 1 isoform 1
            [Homo sapiens]
          Length = 8797

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 34/152 (22%), Positives = 62/152 (40%), Gaps = 28/152 (18%)

Query: 57   WYESPSLGSHSTY---KPSKL--EFLMRSTSKKTRKEDHARLRALNGLLYKALTDLLCTP 111
            W E   + +H T      S+L  ++++  T  +  KE  + L A+   L + LT + CT 
Sbjct: 5542 WIEKAKVLAHGTIAWNSASQLREQYILHQTLLEESKEIDSELEAMTEKL-QYLTSVYCTE 5600

Query: 112  EVSQELYDLNVELSKV------------SLTPDFSACRAYWKTTLSAEQNAHMEAV---- 155
            ++SQ++ +L  E  ++                D     A  K   +A + A         
Sbjct: 5601 KMSQQVAELGRETEELRQMIKIRLQNLQDAAKDMKKFEAELKKLQAALEQAQATLTSPEV 5660

Query: 156  ----LQRSAAHMRHLLMSQQTLRNVPPIVFVQ 183
                L+   +H +HLL   ++L+  P +  VQ
Sbjct: 5661 GRLSLKEQLSHRQHLLSEMESLK--PKVQAVQ 5690


>gi|7705373 LIM domain and actin binding 1 isoform b [Homo sapiens]
          Length = 759

 Score = 28.9 bits (63), Expect = 7.0
 Identities = 26/118 (22%), Positives = 46/118 (38%), Gaps = 5/118 (4%)

Query: 121 NVELSKVSLTPDFSACRAYWKTTLSAEQNAHMEAVLQRSAAHMRHLLMSQQTLRNVPP-- 178
           N+EL ++S T        Y         + +    L+ S   ++   M Q+   NVPP  
Sbjct: 256 NLELPRLSETSIKDRMAKYQAAVSKQSSSTNYTNELKASGGEIKIHKMEQK--ENVPPGP 313

Query: 179 -IVFVQDKGNAALAELDQLLAVADFGPRDERDNFVQNDFRDPDAPQPCGTTEPTTSSS 235
            +     +G    A  + L   +     D RD+ V+++ + P  P+P       +S S
Sbjct: 314 EVCITHQEGEKISANENSLAVRSTPAEDDSRDSQVKSEVQQPVHPKPLSPDSRASSLS 371


>gi|95147335 inositol 1,4,5-triphosphate receptor, type 2 [Homo
           sapiens]
          Length = 2701

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 124 LSKVSLTPDFSACRAYWKTTLSAEQNAHMEAVLQRSAAHMRHLLMSQQTLRN 175
           L KV     +SA + YWK    A+Q  H EA L +   H   L   Q    N
Sbjct: 57  LFKVCPMNRYSAQKQYWKAK-QAKQGNHTEAALLKKLQHAAELEQKQNESEN 107


>gi|145309302 cell division cycle 2-like 5 isoform 1 [Homo sapiens]
          Length = 1512

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 25/99 (25%), Positives = 38/99 (38%), Gaps = 16/99 (16%)

Query: 195  QLLAVADFGPRDERDNFVQNDFRDPDAPQPCGTTE------------PTTSSSL----CG 238
            Q + + +  P  +R   +  D R P+ P+P   TE            PTTSSSL     G
Sbjct: 1238 QDMRILELTPEPDRPRILPPDQRPPEPPEPPPVTEEDLDYRTENQHVPTTSSSLTDPHAG 1297

Query: 239  IDHEALNKQIMEYKRRKDKGLGGLVWQGQVAELTTQMQK 277
            +    L        +   K  GG+ +Q     ++T   K
Sbjct: 1298 VKAALLQLLAQHQPQDDPKREGGIDYQAGDTYVSTSDYK 1336


>gi|145309300 cell division cycle 2-like 5 isoform 2 [Homo sapiens]
          Length = 1452

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 25/99 (25%), Positives = 38/99 (38%), Gaps = 16/99 (16%)

Query: 195  QLLAVADFGPRDERDNFVQNDFRDPDAPQPCGTTE------------PTTSSSL----CG 238
            Q + + +  P  +R   +  D R P+ P+P   TE            PTTSSSL     G
Sbjct: 1178 QDMRILELTPEPDRPRILPPDQRPPEPPEPPPVTEEDLDYRTENQHVPTTSSSLTDPHAG 1237

Query: 239  IDHEALNKQIMEYKRRKDKGLGGLVWQGQVAELTTQMQK 277
            +    L        +   K  GG+ +Q     ++T   K
Sbjct: 1238 VKAALLQLLAQHQPQDDPKREGGIDYQAGDTYVSTSDYK 1276


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.315    0.130    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,710,489
Number of Sequences: 37866
Number of extensions: 607861
Number of successful extensions: 1721
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1717
Number of HSP's gapped (non-prelim): 19
length of query: 343
length of database: 18,247,518
effective HSP length: 103
effective length of query: 240
effective length of database: 14,347,320
effective search space: 3443356800
effective search space used: 3443356800
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.