Search of human proteins with 4758496

Search of human proteins with 4758496

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4758496 H2A histone family, member Y isoform 2 [Homo
sapiens]
         (371 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4758496 H2A histone family, member Y isoform 2 [Homo sapiens]      721   0.0  
gi|93141020 H2A histone family, member Y isoform 2 [Homo sapiens]     721   0.0  
gi|93141018 H2A histone family, member Y isoform 3 [Homo sapiens]     716   0.0  
gi|20336746 H2A histone family, member Y isoform 1 [Homo sapiens]     669   0.0  
gi|8923920 H2A histone family, member Y2 [Homo sapiens]               497   e-141
gi|4504253 H2A histone family, member X [Homo sapiens]                159   5e-39
gi|28195394 histone cluster 2, H2ab [Homo sapiens]                    154   1e-37
gi|25092737 histone cluster 1, H2aa [Homo sapiens]                    153   2e-37
gi|106775678 histone cluster 2, H2aa4 [Homo sapiens]                  152   4e-37
gi|4504251 histone cluster 2, H2aa3 [Homo sapiens]                    152   4e-37
gi|24638446 histone cluster 2, H2ac [Homo sapiens]                    152   6e-37
gi|15617199 histone cluster 3, H2a [Homo sapiens]                     152   6e-37
gi|4504245 histone cluster 1, H2ac [Homo sapiens]                     151   8e-37
gi|29553970 H2A histone family, member J [Homo sapiens]               150   1e-36
gi|19557656 histone cluster 1, H2ab [Homo sapiens]                    150   1e-36
gi|10645195 histone cluster 1, H2ae [Homo sapiens]                    150   1e-36
gi|10800130 histone cluster 1, H2ad [Homo sapiens]                    150   1e-36
gi|10800132 histone cluster 1, H2ag [Homo sapiens]                    150   2e-36
gi|4504239 histone cluster 1, H2ai [Homo sapiens]                     150   2e-36
gi|18105045 histone cluster 1, H2ah [Homo sapiens]                    150   2e-36
gi|4504241 histone cluster 1, H2ak [Homo sapiens]                     150   2e-36
gi|4504249 histone cluster 1, H2am [Homo sapiens]                     150   2e-36
gi|4504243 histone cluster 1, H2al [Homo sapiens]                     150   2e-36
gi|10800144 histone cluster 1, H2aj [Homo sapiens]                    150   2e-36
gi|4504255 H2A histone family, member Z [Homo sapiens]                121   9e-28
gi|6912616 H2A histone family, member V isoform 1 [Homo sapiens]      121   1e-27
gi|41406067 H2A histone family, member V isoform 3 [Homo sapiens]     107   1e-23
gi|20357599 H2A histone family, member V isoform 2 [Homo sapiens]     102   4e-22
gi|63029943 H2A histone family, member B2 [Homo sapiens]               74   2e-13
gi|63029935 H2A histone family, member B3 [Homo sapiens]               74   2e-13

>gi|4758496 H2A histone family, member Y isoform 2 [Homo sapiens]
          Length = 371

 Score =  721 bits (1861), Expect = 0.0
 Identities = 371/371 (100%), Positives = 371/371 (100%)

Query: 1   MSSRGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEI 60
           MSSRGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEI
Sbjct: 1   MSSRGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEI 60

Query: 61  LELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGS 120
           LELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGS
Sbjct: 61  LELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGS 120

Query: 121 KGKLEAIITPPPAKKAKSPSQKKPVSKKAGGKKGARKSKKQGEVSKAASADSTTEGTPAD 180
           KGKLEAIITPPPAKKAKSPSQKKPVSKKAGGKKGARKSKKQGEVSKAASADSTTEGTPAD
Sbjct: 121 KGKLEAIITPPPAKKAKSPSQKKPVSKKAGGKKGARKSKKQGEVSKAASADSTTEGTPAD 180

Query: 181 GFTVLSTKSLFLGQKLNLIHSEISNLAGFEVEAIINPTNADIDLKDDLGNTLEKKGGKEF 240
           GFTVLSTKSLFLGQKLNLIHSEISNLAGFEVEAIINPTNADIDLKDDLGNTLEKKGGKEF
Sbjct: 181 GFTVLSTKSLFLGQKLNLIHSEISNLAGFEVEAIINPTNADIDLKDDLGNTLEKKGGKEF 240

Query: 241 VEAVLELRKKNGPLEVAGAAVSAGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLALA 300
           VEAVLELRKKNGPLEVAGAAVSAGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLALA
Sbjct: 241 VEAVLELRKKNGPLEVAGAAVSAGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLALA 300

Query: 301 DDKKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTMSSSIKTVYFVLFDSESIGI 360
           DDKKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTMSSSIKTVYFVLFDSESIGI
Sbjct: 301 DDKKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTMSSSIKTVYFVLFDSESIGI 360

Query: 361 YVQEMAKLDAN 371
           YVQEMAKLDAN
Sbjct: 361 YVQEMAKLDAN 371


>gi|93141020 H2A histone family, member Y isoform 2 [Homo sapiens]
          Length = 371

 Score =  721 bits (1861), Expect = 0.0
 Identities = 371/371 (100%), Positives = 371/371 (100%)

Query: 1   MSSRGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEI 60
           MSSRGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEI
Sbjct: 1   MSSRGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEI 60

Query: 61  LELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGS 120
           LELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGS
Sbjct: 61  LELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGS 120

Query: 121 KGKLEAIITPPPAKKAKSPSQKKPVSKKAGGKKGARKSKKQGEVSKAASADSTTEGTPAD 180
           KGKLEAIITPPPAKKAKSPSQKKPVSKKAGGKKGARKSKKQGEVSKAASADSTTEGTPAD
Sbjct: 121 KGKLEAIITPPPAKKAKSPSQKKPVSKKAGGKKGARKSKKQGEVSKAASADSTTEGTPAD 180

Query: 181 GFTVLSTKSLFLGQKLNLIHSEISNLAGFEVEAIINPTNADIDLKDDLGNTLEKKGGKEF 240
           GFTVLSTKSLFLGQKLNLIHSEISNLAGFEVEAIINPTNADIDLKDDLGNTLEKKGGKEF
Sbjct: 181 GFTVLSTKSLFLGQKLNLIHSEISNLAGFEVEAIINPTNADIDLKDDLGNTLEKKGGKEF 240

Query: 241 VEAVLELRKKNGPLEVAGAAVSAGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLALA 300
           VEAVLELRKKNGPLEVAGAAVSAGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLALA
Sbjct: 241 VEAVLELRKKNGPLEVAGAAVSAGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLALA 300

Query: 301 DDKKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTMSSSIKTVYFVLFDSESIGI 360
           DDKKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTMSSSIKTVYFVLFDSESIGI
Sbjct: 301 DDKKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTMSSSIKTVYFVLFDSESIGI 360

Query: 361 YVQEMAKLDAN 371
           YVQEMAKLDAN
Sbjct: 361 YVQEMAKLDAN 371


>gi|93141018 H2A histone family, member Y isoform 3 [Homo sapiens]
          Length = 372

 Score =  716 bits (1849), Expect = 0.0
 Identities = 371/372 (99%), Positives = 371/372 (99%), Gaps = 1/372 (0%)

Query: 1   MSSRGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEI 60
           MSSRGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEI
Sbjct: 1   MSSRGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEI 60

Query: 61  LELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGS 120
           LELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGS
Sbjct: 61  LELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGS 120

Query: 121 KGKLEAIITPPPAKKAKSPSQKKPVSKKAGGKKGARKSKK-QGEVSKAASADSTTEGTPA 179
           KGKLEAIITPPPAKKAKSPSQKKPVSKKAGGKKGARKSKK QGEVSKAASADSTTEGTPA
Sbjct: 121 KGKLEAIITPPPAKKAKSPSQKKPVSKKAGGKKGARKSKKKQGEVSKAASADSTTEGTPA 180

Query: 180 DGFTVLSTKSLFLGQKLNLIHSEISNLAGFEVEAIINPTNADIDLKDDLGNTLEKKGGKE 239
           DGFTVLSTKSLFLGQKLNLIHSEISNLAGFEVEAIINPTNADIDLKDDLGNTLEKKGGKE
Sbjct: 181 DGFTVLSTKSLFLGQKLNLIHSEISNLAGFEVEAIINPTNADIDLKDDLGNTLEKKGGKE 240

Query: 240 FVEAVLELRKKNGPLEVAGAAVSAGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLAL 299
           FVEAVLELRKKNGPLEVAGAAVSAGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLAL
Sbjct: 241 FVEAVLELRKKNGPLEVAGAAVSAGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLAL 300

Query: 300 ADDKKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTMSSSIKTVYFVLFDSESIG 359
           ADDKKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTMSSSIKTVYFVLFDSESIG
Sbjct: 301 ADDKKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTMSSSIKTVYFVLFDSESIG 360

Query: 360 IYVQEMAKLDAN 371
           IYVQEMAKLDAN
Sbjct: 361 IYVQEMAKLDAN 372


>gi|20336746 H2A histone family, member Y isoform 1 [Homo sapiens]
          Length = 369

 Score =  669 bits (1726), Expect = 0.0
 Identities = 346/372 (93%), Positives = 358/372 (96%), Gaps = 4/372 (1%)

Query: 1   MSSRGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEI 60
           MSSRGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEI
Sbjct: 1   MSSRGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEI 60

Query: 61  LELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGS 120
           LELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGS
Sbjct: 61  LELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGS 120

Query: 121 KGKLEAIITPPPAKKAKSPSQKKPVSKKAGGKKGARKS-KKQGEVSKAASADSTTEGTPA 179
           KGKLEAIITPPPAKKAKSPSQKKPVSKKAGGKKGARKS KKQGEVSKAASADSTTEGTPA
Sbjct: 121 KGKLEAIITPPPAKKAKSPSQKKPVSKKAGGKKGARKSKKKQGEVSKAASADSTTEGTPA 180

Query: 180 DGFTVLSTKSLFLGQKLNLIHSEISNLAGFEVEAIINPTNADIDLKDDLGNTLEKKGGKE 239
           DGFTVLSTKSLFLGQKL ++ ++I   A  + +A+++PTN D  +  ++GNTLEKKGGKE
Sbjct: 181 DGFTVLSTKSLFLGQKLQVVQADI---ASIDSDAVVHPTNTDFYIGGEVGNTLEKKGGKE 237

Query: 240 FVEAVLELRKKNGPLEVAGAAVSAGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLAL 299
           FVEAVLELRKKNGPLEVAGAAVSAGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLAL
Sbjct: 238 FVEAVLELRKKNGPLEVAGAAVSAGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLAL 297

Query: 300 ADDKKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTMSSSIKTVYFVLFDSESIG 359
           ADDKKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTMSSSIKTVYFVLFDSESIG
Sbjct: 298 ADDKKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTMSSSIKTVYFVLFDSESIG 357

Query: 360 IYVQEMAKLDAN 371
           IYVQEMAKLDAN
Sbjct: 358 IYVQEMAKLDAN 369


>gi|8923920 H2A histone family, member Y2 [Homo sapiens]
          Length = 372

 Score =  497 bits (1279), Expect = e-141
 Identities = 254/371 (68%), Positives = 297/371 (80%), Gaps = 1/371 (0%)

Query: 1   MSSRGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEI 60
           MS R GKKK +K SRSA+AGVIFPVGR++RY+KKG  KYRI VGAPVYMAAV+EYL AEI
Sbjct: 1   MSGRSGKKKMSKLSRSARAGVIFPVGRLMRYLKKGTFKYRISVGAPVYMAAVIEYLAAEI 60

Query: 61  LELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGS 120
           LELAGNAARDNKK R+ PRHILLAVANDEELNQLLKGVTIASGGVLP IHPELLAKKRG+
Sbjct: 61  LELAGNAARDNKKARIAPRHILLAVANDEELNQLLKGVTIASGGVLPRIHPELLAKKRGT 120

Query: 121 KGKLEAIITPPPAKKA-KSPSQKKPVSKKAGGKKGARKSKKQGEVSKAASADSTTEGTPA 179
           KGK E I++PPP K+  K+ S KK   K    K    K  K  +  K  +++ST+E  P 
Sbjct: 121 KGKSETILSPPPEKRGRKATSGKKGGKKSKAAKPRTSKKSKPKDSDKEGTSNSTSEDGPG 180

Query: 180 DGFTVLSTKSLFLGQKLNLIHSEISNLAGFEVEAIINPTNADIDLKDDLGNTLEKKGGKE 239
           DGFT+LS+KSL LGQKL+L  S+IS++    VE I++PT A+IDLK+D+G  LEK GGKE
Sbjct: 181 DGFTILSSKSLVLGQKLSLTQSDISHIGSMRVEGIVHPTTAEIDLKEDIGKALEKAGGKE 240

Query: 240 FVEAVLELRKKNGPLEVAGAAVSAGHGLPAKFVIHCNSPVWGADKCEELLEKTVKNCLAL 299
           F+E V ELRK  GPLEVA AAVS   GL AKFVIHC+ P WG+DKCEE LE+T+KNCL+ 
Sbjct: 241 FLETVKELRKSQGPLEVAEAAVSQSSGLAAKFVIHCHIPQWGSDKCEEQLEETIKNCLSA 300

Query: 300 ADDKKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTMSSSIKTVYFVLFDSESIG 359
           A+DKKLKS+AFP   SGRN FPKQTAAQ+ LKAIS++F  + +SS+K VYF+LFDSESIG
Sbjct: 301 AEDKKLKSVAFPPFPSGRNCFPKQTAAQVTLKAISAHFDDSSASSLKNVYFLLFDSESIG 360

Query: 360 IYVQEMAKLDA 370
           IYVQEMAKLDA
Sbjct: 361 IYVQEMAKLDA 371


>gi|4504253 H2A histone family, member X [Homo sapiens]
          Length = 143

 Score =  159 bits (401), Expect = 5e-39
 Identities = 85/138 (61%), Positives = 102/138 (73%), Gaps = 3/138 (2%)

Query: 5   GGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELA 64
           GGK ++   SRS++AG+ FPVGR+ R ++KGH   R+G GAPVY+AAVLEYLTAEILELA
Sbjct: 8   GGKARAKAKSRSSRAGLQFPVGRVHRLLRKGHYAERVGAGAPVYLAAVLEYLTAEILELA 67

Query: 65  GNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKL 124
           GNAARDNKK R+ PRH+ LA+ NDEELN+LL GVTIA GGVLPNI   LL KK  +    
Sbjct: 68  GNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTSATVGP 127

Query: 125 EAIITPPPAKKAKSPSQK 142
           +A   P   KKA   SQ+
Sbjct: 128 KA---PSGGKKATQASQE 142


>gi|28195394 histone cluster 2, H2ab [Homo sapiens]
          Length = 130

 Score =  154 bits (389), Expect = 1e-37
 Identities = 79/117 (67%), Positives = 94/117 (80%)

Query: 4   RGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILEL 63
           +GGK ++   SRS++AG+ FPVGR+ R ++KG+   R+G GAPVY+AAVLEYLTAEILEL
Sbjct: 7   QGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILEL 66

Query: 64  AGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGS 120
           AGNAARDNKK R+ PRH+ LAV NDEELN+LL GVTIA GGVLPNI   LL KK  S
Sbjct: 67  AGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTES 123


>gi|25092737 histone cluster 1, H2aa [Homo sapiens]
          Length = 131

 Score =  153 bits (387), Expect = 2e-37
 Identities = 78/117 (66%), Positives = 94/117 (80%)

Query: 4   RGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILEL 63
           +GGK ++   SRS++AG+ FPVGR+ R ++KG+   RIG GAPVY+AAVLEYLTAEILEL
Sbjct: 7   QGGKARAKSKSRSSRAGLQFPVGRIHRLLRKGNYAERIGAGAPVYLAAVLEYLTAEILEL 66

Query: 64  AGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGS 120
           AGNA+RDNKK R+ PRH+ LA+ NDEELN+LL GVTIA GGVLPNI   LL KK  S
Sbjct: 67  AGNASRDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTES 123


>gi|106775678 histone cluster 2, H2aa4 [Homo sapiens]
          Length = 130

 Score =  152 bits (385), Expect = 4e-37
 Identities = 79/120 (65%), Positives = 94/120 (78%)

Query: 4   RGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILEL 63
           +GGK ++   SRS++AG+ FPVGR+ R ++KG+   R+G GAPVYMAAVLEYLTAEILEL
Sbjct: 7   QGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILEL 66

Query: 64  AGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGK 123
           AGNAARDNKK R+ PRH+ LA+ NDEELN+LL  VTIA GGVLPNI   LL KK  S  K
Sbjct: 67  AGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHHK 126


>gi|4504251 histone cluster 2, H2aa3 [Homo sapiens]
          Length = 130

 Score =  152 bits (385), Expect = 4e-37
 Identities = 79/120 (65%), Positives = 94/120 (78%)

Query: 4   RGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILEL 63
           +GGK ++   SRS++AG+ FPVGR+ R ++KG+   R+G GAPVYMAAVLEYLTAEILEL
Sbjct: 7   QGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILEL 66

Query: 64  AGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGK 123
           AGNAARDNKK R+ PRH+ LA+ NDEELN+LL  VTIA GGVLPNI   LL KK  S  K
Sbjct: 67  AGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHHK 126


>gi|24638446 histone cluster 2, H2ac [Homo sapiens]
          Length = 129

 Score =  152 bits (383), Expect = 6e-37
 Identities = 78/117 (66%), Positives = 93/117 (79%)

Query: 4   RGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILEL 63
           +GGK ++   SRS++AG+ FPVGR+ R ++KG+   R+G GAPVYMAAVLEYLTAEILEL
Sbjct: 7   QGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILEL 66

Query: 64  AGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGS 120
           AGNAARDNKK R+ PRH+ LA+ NDEELN+LL  VTIA GGVLPNI   LL KK  S
Sbjct: 67  AGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTES 123


>gi|15617199 histone cluster 3, H2a [Homo sapiens]
          Length = 130

 Score =  152 bits (383), Expect = 6e-37
 Identities = 78/120 (65%), Positives = 94/120 (78%)

Query: 4   RGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILEL 63
           +GGK ++   SRS++AG+ FPVGR+ R ++KG+   R+G GAPVY+AAVLEYLTAEILEL
Sbjct: 7   QGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILEL 66

Query: 64  AGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGK 123
           AGNAARDNKK R+ PRH+ LA+ NDEELN+LL  VTIA GGVLPNI   LL KK  S  K
Sbjct: 67  AGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTESHHK 126


>gi|4504245 histone cluster 1, H2ac [Homo sapiens]
          Length = 130

 Score =  151 bits (382), Expect = 8e-37
 Identities = 78/120 (65%), Positives = 94/120 (78%)

Query: 4   RGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILEL 63
           +GGK ++   SRS++AG+ FPVGR+ R ++KG+   R+G GAPVY+AAVLEYLTAEILEL
Sbjct: 7   QGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILEL 66

Query: 64  AGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGK 123
           AGNAARDNKK R+ PRH+ LA+ NDEELN+LL  VTIA GGVLPNI   LL KK  S  K
Sbjct: 67  AGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTESHHK 126


>gi|29553970 H2A histone family, member J [Homo sapiens]
          Length = 129

 Score =  150 bits (380), Expect = 1e-36
 Identities = 77/118 (65%), Positives = 94/118 (79%)

Query: 4   RGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILEL 63
           +GGK ++   SRS++AG+ FPVGR+ R ++KG+   R+G GAPVY+AAVLEYLTAEILEL
Sbjct: 7   QGGKVRAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILEL 66

Query: 64  AGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSK 121
           AGNAARDNKK R+ PRH+ LA+ NDEELN+LL  VTIA GGVLPNI   LL KK  S+
Sbjct: 67  AGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESQ 124


>gi|19557656 histone cluster 1, H2ab [Homo sapiens]
          Length = 130

 Score =  150 bits (380), Expect = 1e-36
 Identities = 77/120 (64%), Positives = 94/120 (78%)

Query: 4   RGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILEL 63
           +GGK ++   +RS++AG+ FPVGR+ R ++KG+   R+G GAPVY+AAVLEYLTAEILEL
Sbjct: 7   QGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILEL 66

Query: 64  AGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGK 123
           AGNAARDNKK R+ PRH+ LA+ NDEELN+LL  VTIA GGVLPNI   LL KK  S  K
Sbjct: 67  AGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTESHHK 126


>gi|10645195 histone cluster 1, H2ae [Homo sapiens]
          Length = 130

 Score =  150 bits (380), Expect = 1e-36
 Identities = 77/120 (64%), Positives = 94/120 (78%)

Query: 4   RGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILEL 63
           +GGK ++   +RS++AG+ FPVGR+ R ++KG+   R+G GAPVY+AAVLEYLTAEILEL
Sbjct: 7   QGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILEL 66

Query: 64  AGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGK 123
           AGNAARDNKK R+ PRH+ LA+ NDEELN+LL  VTIA GGVLPNI   LL KK  S  K
Sbjct: 67  AGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTESHHK 126


>gi|10800130 histone cluster 1, H2ad [Homo sapiens]
          Length = 130

 Score =  150 bits (380), Expect = 1e-36
 Identities = 77/120 (64%), Positives = 94/120 (78%)

Query: 4   RGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILEL 63
           +GGK ++   +RS++AG+ FPVGR+ R ++KG+   R+G GAPVY+AAVLEYLTAEILEL
Sbjct: 7   QGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILEL 66

Query: 64  AGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGK 123
           AGNAARDNKK R+ PRH+ LA+ NDEELN+LL  VTIA GGVLPNI   LL KK  S  K
Sbjct: 67  AGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHHK 126


>gi|10800132 histone cluster 1, H2ag [Homo sapiens]
          Length = 130

 Score =  150 bits (379), Expect = 2e-36
 Identities = 77/120 (64%), Positives = 94/120 (78%)

Query: 4   RGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILEL 63
           +GGK ++   +RS++AG+ FPVGR+ R ++KG+   R+G GAPVY+AAVLEYLTAEILEL
Sbjct: 7   QGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILEL 66

Query: 64  AGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGK 123
           AGNAARDNKK R+ PRH+ LA+ NDEELN+LL  VTIA GGVLPNI   LL KK  S  K
Sbjct: 67  AGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHHK 126


>gi|4504239 histone cluster 1, H2ai [Homo sapiens]
          Length = 130

 Score =  150 bits (379), Expect = 2e-36
 Identities = 77/120 (64%), Positives = 94/120 (78%)

Query: 4   RGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILEL 63
           +GGK ++   +RS++AG+ FPVGR+ R ++KG+   R+G GAPVY+AAVLEYLTAEILEL
Sbjct: 7   QGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILEL 66

Query: 64  AGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGK 123
           AGNAARDNKK R+ PRH+ LA+ NDEELN+LL  VTIA GGVLPNI   LL KK  S  K
Sbjct: 67  AGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHHK 126


>gi|18105045 histone cluster 1, H2ah [Homo sapiens]
          Length = 128

 Score =  150 bits (379), Expect = 2e-36
 Identities = 77/120 (64%), Positives = 94/120 (78%)

Query: 4   RGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILEL 63
           +GGK ++   +RS++AG+ FPVGR+ R ++KG+   R+G GAPVY+AAVLEYLTAEILEL
Sbjct: 7   QGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILEL 66

Query: 64  AGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGK 123
           AGNAARDNKK R+ PRH+ LA+ NDEELN+LL  VTIA GGVLPNI   LL KK  S  K
Sbjct: 67  AGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHHK 126


>gi|4504241 histone cluster 1, H2ak [Homo sapiens]
          Length = 130

 Score =  150 bits (379), Expect = 2e-36
 Identities = 77/120 (64%), Positives = 94/120 (78%)

Query: 4   RGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILEL 63
           +GGK ++   +RS++AG+ FPVGR+ R ++KG+   R+G GAPVY+AAVLEYLTAEILEL
Sbjct: 7   QGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILEL 66

Query: 64  AGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGK 123
           AGNAARDNKK R+ PRH+ LA+ NDEELN+LL  VTIA GGVLPNI   LL KK  S  K
Sbjct: 67  AGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHHK 126


>gi|4504249 histone cluster 1, H2am [Homo sapiens]
          Length = 130

 Score =  150 bits (379), Expect = 2e-36
 Identities = 77/120 (64%), Positives = 94/120 (78%)

Query: 4   RGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILEL 63
           +GGK ++   +RS++AG+ FPVGR+ R ++KG+   R+G GAPVY+AAVLEYLTAEILEL
Sbjct: 7   QGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILEL 66

Query: 64  AGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGK 123
           AGNAARDNKK R+ PRH+ LA+ NDEELN+LL  VTIA GGVLPNI   LL KK  S  K
Sbjct: 67  AGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHHK 126


>gi|4504243 histone cluster 1, H2al [Homo sapiens]
          Length = 130

 Score =  150 bits (379), Expect = 2e-36
 Identities = 77/120 (64%), Positives = 94/120 (78%)

Query: 4   RGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILEL 63
           +GGK ++   +RS++AG+ FPVGR+ R ++KG+   R+G GAPVY+AAVLEYLTAEILEL
Sbjct: 7   QGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILEL 66

Query: 64  AGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGK 123
           AGNAARDNKK R+ PRH+ LA+ NDEELN+LL  VTIA GGVLPNI   LL KK  S  K
Sbjct: 67  AGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHHK 126


>gi|10800144 histone cluster 1, H2aj [Homo sapiens]
          Length = 128

 Score =  150 bits (379), Expect = 2e-36
 Identities = 77/120 (64%), Positives = 94/120 (78%)

Query: 4   RGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILEL 63
           +GGK ++   +RS++AG+ FPVGR+ R ++KG+   R+G GAPVY+AAVLEYLTAEILEL
Sbjct: 7   QGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILEL 66

Query: 64  AGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGK 123
           AGNAARDNKK R+ PRH+ LA+ NDEELN+LL  VTIA GGVLPNI   LL KK  S  K
Sbjct: 67  AGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHHK 126


>gi|4504255 H2A histone family, member Z [Homo sapiens]
          Length = 128

 Score =  121 bits (304), Expect = 9e-28
 Identities = 64/117 (54%), Positives = 84/117 (71%), Gaps = 2/117 (1%)

Query: 6   GKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKY-RIGVGAPVYMAAVLEYLTAEILELA 64
           GK K+   SRS +AG+ FPVGR+ R++K     + R+G  A VY AA+LEYLTAE+LELA
Sbjct: 11  GKAKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELA 70

Query: 65  GNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSK 121
           GNA++D K  R+TPRH+ LA+  DEEL+ L+K  TIA GGV+P+IH  L+ KK   K
Sbjct: 71  GNASKDLKVKRITPRHLQLAIRGDEELDSLIK-ATIAGGGVIPHIHKSLIGKKGQQK 126


>gi|6912616 H2A histone family, member V isoform 1 [Homo sapiens]
          Length = 128

 Score =  121 bits (303), Expect = 1e-27
 Identities = 64/117 (54%), Positives = 84/117 (71%), Gaps = 2/117 (1%)

Query: 6   GKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKY-RIGVGAPVYMAAVLEYLTAEILELA 64
           GK K+   SRS +AG+ FPVGR+ R++K     + R+G  A VY AA+LEYLTAE+LELA
Sbjct: 11  GKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELA 70

Query: 65  GNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSK 121
           GNA++D K  R+TPRH+ LA+  DEEL+ L+K  TIA GGV+P+IH  L+ KK   K
Sbjct: 71  GNASKDLKVKRITPRHLQLAIRGDEELDSLIK-ATIAGGGVIPHIHKSLIGKKGQQK 126


>gi|41406067 H2A histone family, member V isoform 3 [Homo sapiens]
          Length = 102

 Score =  107 bits (268), Expect = 1e-23
 Identities = 56/101 (55%), Positives = 74/101 (73%), Gaps = 2/101 (1%)

Query: 22  IFPVGRMLRYIKKGHPKY-RIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPRH 80
           +FPVGR+ R++K     + R+G  A VY AA+LEYLTAE+LELAGNA++D K  R+TPRH
Sbjct: 1   MFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRH 60

Query: 81  ILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSK 121
           + LA+  DEEL+ L+K  TIA GGV+P+IH  L+ KK   K
Sbjct: 61  LQLAIRGDEELDSLIK-ATIAGGGVIPHIHKSLIGKKGQQK 100


>gi|20357599 H2A histone family, member V isoform 2 [Homo sapiens]
          Length = 114

 Score =  102 bits (255), Expect = 4e-22
 Identities = 55/99 (55%), Positives = 72/99 (72%), Gaps = 2/99 (2%)

Query: 6   GKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKY-RIGVGAPVYMAAVLEYLTAEILELA 64
           GK K+   SRS +AG+ FPVGR+ R++K     + R+G  A VY AA+LEYLTAE+LELA
Sbjct: 11  GKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELA 70

Query: 65  GNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASG 103
           GNA++D K  R+TPRH+ LA+  DEEL+ L+K  TIA G
Sbjct: 71  GNASKDLKVKRITPRHLQLAIRGDEELDSLIK-ATIAGG 108


>gi|63029943 H2A histone family, member B2 [Homo sapiens]
          Length = 115

 Score = 73.9 bits (180), Expect = 2e-13
 Identities = 39/99 (39%), Positives = 62/99 (62%)

Query: 3   SRGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILE 62
           S G   +    SR+ +A + F V ++ R +++GH   R+   APVY+AAV+EYLTA++LE
Sbjct: 10  SSGAGGRGRTCSRTVRAELSFSVSQVERSLREGHYAQRLSRTAPVYLAAVIEYLTAKVLE 69

Query: 63  LAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIA 101
           LAGN A+++ +  +TP  + + V ND  L+ L    TI+
Sbjct: 70  LAGNEAQNSGERNITPLLLDMVVHNDRLLSTLFNTTTIS 108


>gi|63029935 H2A histone family, member B3 [Homo sapiens]
          Length = 115

 Score = 73.9 bits (180), Expect = 2e-13
 Identities = 39/99 (39%), Positives = 62/99 (62%)

Query: 3   SRGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILE 62
           S G   +    SR+ +A + F V ++ R +++GH   R+   APVY+AAV+EYLTA++LE
Sbjct: 10  SSGAGGRGRTCSRTVRAELSFSVSQVERSLREGHYAQRLSRTAPVYLAAVIEYLTAKVLE 69

Query: 63  LAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIA 101
           LAGN A+++ +  +TP  + + V ND  L+ L    TI+
Sbjct: 70  LAGNEAQNSGERNITPLLLDMVVHNDRLLSTLFNTTTIS 108


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.312    0.131    0.361 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,494,620
Number of Sequences: 37866
Number of extensions: 620025
Number of successful extensions: 2434
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 56
Number of HSP's that attempted gapping in prelim test: 2218
Number of HSP's gapped (non-prelim): 241
length of query: 371
length of database: 18,247,518
effective HSP length: 104
effective length of query: 267
effective length of database: 14,309,454
effective search space: 3820624218
effective search space used: 3820624218
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.