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Search of human proteins with 4758404
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4758404 FSHD region gene 1 [Homo sapiens]
(258 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4758404 FSHD region gene 1 [Homo sapiens] 521 e-148
gi|239758061 PREDICTED: similar to hCG1992776 [Homo sapiens] 385 e-107
gi|239747887 PREDICTED: hypothetical protein XP_002346465 [Homo ... 385 e-107
gi|239747131 PREDICTED: hypothetical protein XP_002343920 [Homo ... 201 4e-52
gi|239758069 PREDICTED: similar to FSHD region gene 1 isoform 2 ... 195 3e-50
gi|239747178 PREDICTED: hypothetical protein XP_002343932 [Homo ... 35 0.085
gi|9966791 fascin 3 [Homo sapiens] 34 0.11
gi|21493045 A-kinase anchor protein 6 [Homo sapiens] 34 0.14
gi|193788732 calcium channel, voltage-dependent, L type, alpha 1... 32 0.42
gi|193788728 calcium channel, voltage-dependent, L type, alpha 1... 32 0.42
gi|193788724 calcium channel, voltage-dependent, L type, alpha 1... 32 0.42
gi|120433602 calcium channel, voltage-dependent, L type, alpha 1... 32 0.42
gi|193788548 calcium channel, voltage-dependent, L type, alpha 1... 32 0.42
gi|193788544 calcium channel, voltage-dependent, L type, alpha 1... 32 0.42
gi|193788542 calcium channel, voltage-dependent, L type, alpha 1... 32 0.42
gi|193788540 calcium channel, voltage-dependent, L type, alpha 1... 32 0.42
gi|193788538 calcium channel, voltage-dependent, L type, alpha 1... 32 0.42
gi|193788536 calcium channel, voltage-dependent, L type, alpha 1... 32 0.42
gi|193794832 calcium channel, voltage-dependent, L type, alpha 1... 32 0.42
gi|193788534 calcium channel, voltage-dependent, L type, alpha 1... 32 0.42
gi|193788532 calcium channel, voltage-dependent, L type, alpha 1... 32 0.42
gi|193794830 calcium channel, voltage-dependent, L type, alpha 1... 32 0.42
gi|193788530 calcium channel, voltage-dependent, L type, alpha 1... 32 0.42
gi|193788528 calcium channel, voltage-dependent, L type, alpha 1... 32 0.42
gi|193794828 calcium channel, voltage-dependent, L type, alpha 1... 32 0.42
gi|193788526 calcium channel, voltage-dependent, L type, alpha 1... 32 0.42
gi|4507115 fascin 1 [Homo sapiens] 32 0.55
gi|14589862 aspartate beta-hydroxylase isoform d [Homo sapiens] 32 0.72
gi|9910364 aspartate beta-hydroxylase isoform e [Homo sapiens] 32 0.72
gi|4759100 splicing factor, arginine/serine-rich 11 [Homo sapiens] 32 0.72
>gi|4758404 FSHD region gene 1 [Homo sapiens]
Length = 258
Score = 521 bits (1341), Expect = e-148
Identities = 258/258 (100%), Positives = 258/258 (100%)
Query: 1 MAEYSYVKSTKLVLKGTKTKSKKKKSKDKKRKREEDEETQLDIVGIWWTVTNFGEISGTI 60
MAEYSYVKSTKLVLKGTKTKSKKKKSKDKKRKREEDEETQLDIVGIWWTVTNFGEISGTI
Sbjct: 1 MAEYSYVKSTKLVLKGTKTKSKKKKSKDKKRKREEDEETQLDIVGIWWTVTNFGEISGTI 60
Query: 61 AIEMDKGTYIHALDNGLFTLGAPHKEVDEGPSPPEQFTAVKLSDSRIALKSGYGKYLGIN 120
AIEMDKGTYIHALDNGLFTLGAPHKEVDEGPSPPEQFTAVKLSDSRIALKSGYGKYLGIN
Sbjct: 61 AIEMDKGTYIHALDNGLFTLGAPHKEVDEGPSPPEQFTAVKLSDSRIALKSGYGKYLGIN 120
Query: 121 SDGLVVGRSDAIGPREQWEPVFQNGKMALLASNSCFIRCNEAGDIEAKSKTAGEEEMIKI 180
SDGLVVGRSDAIGPREQWEPVFQNGKMALLASNSCFIRCNEAGDIEAKSKTAGEEEMIKI
Sbjct: 121 SDGLVVGRSDAIGPREQWEPVFQNGKMALLASNSCFIRCNEAGDIEAKSKTAGEEEMIKI 180
Query: 181 RSCAERETKKKDDIPEEDKGNVKQCEINYVKKFQSFQDHKLKISKEDSKILKKARKDGFL 240
RSCAERETKKKDDIPEEDKGNVKQCEINYVKKFQSFQDHKLKISKEDSKILKKARKDGFL
Sbjct: 181 RSCAERETKKKDDIPEEDKGNVKQCEINYVKKFQSFQDHKLKISKEDSKILKKARKDGFL 240
Query: 241 HETLLDRRAKLKADRYCK 258
HETLLDRRAKLKADRYCK
Sbjct: 241 HETLLDRRAKLKADRYCK 258
>gi|239758061 PREDICTED: similar to hCG1992776 [Homo sapiens]
Length = 206
Score = 385 bits (988), Expect = e-107
Identities = 189/205 (92%), Positives = 197/205 (96%)
Query: 43 IVGIWWTVTNFGEISGTIAIEMDKGTYIHALDNGLFTLGAPHKEVDEGPSPPEQFTAVKL 102
+V IWWTVTNFGEISGTIAIEMD+GTYIHALDNGLFTLGAPHKEVDEGPSPPEQF+AVKL
Sbjct: 2 LVRIWWTVTNFGEISGTIAIEMDEGTYIHALDNGLFTLGAPHKEVDEGPSPPEQFSAVKL 61
Query: 103 SDSRIALKSGYGKYLGINSDGLVVGRSDAIGPREQWEPVFQNGKMALLASNSCFIRCNEA 162
SDSRI LKSGYGKYLGINSD LVVGRSDAIGPREQWEPVF+ GKMAL SNSCFIR +EA
Sbjct: 62 SDSRITLKSGYGKYLGINSDELVVGRSDAIGPREQWEPVFKIGKMALSTSNSCFIRYSEA 121
Query: 163 GDIEAKSKTAGEEEMIKIRSCAERETKKKDDIPEEDKGNVKQCEINYVKKFQSFQDHKLK 222
DIEAKSKTAGEEEMIKIRSCAERETKKKDDIPEEDKGN+KQCEINYVKKFQSFQDHKLK
Sbjct: 122 EDIEAKSKTAGEEEMIKIRSCAERETKKKDDIPEEDKGNIKQCEINYVKKFQSFQDHKLK 181
Query: 223 ISKEDSKILKKARKDGFLHETLLDR 247
ISKE+SKILKKA+KDGFLHETLLDR
Sbjct: 182 ISKEESKILKKAQKDGFLHETLLDR 206
>gi|239747887 PREDICTED: hypothetical protein XP_002346465 [Homo
sapiens]
Length = 206
Score = 385 bits (988), Expect = e-107
Identities = 189/205 (92%), Positives = 197/205 (96%)
Query: 43 IVGIWWTVTNFGEISGTIAIEMDKGTYIHALDNGLFTLGAPHKEVDEGPSPPEQFTAVKL 102
+V IWWTVTNFGEISGTIAIEMD+GTYIHALDNGLFTLGAPHKEVDEGPSPPEQF+AVKL
Sbjct: 2 LVRIWWTVTNFGEISGTIAIEMDEGTYIHALDNGLFTLGAPHKEVDEGPSPPEQFSAVKL 61
Query: 103 SDSRIALKSGYGKYLGINSDGLVVGRSDAIGPREQWEPVFQNGKMALLASNSCFIRCNEA 162
SDSRI LKSGYGKYLGINSD LVVGRSDAIGPREQWEPVF+ GKMAL SNSCFIR +EA
Sbjct: 62 SDSRITLKSGYGKYLGINSDELVVGRSDAIGPREQWEPVFKIGKMALSTSNSCFIRYSEA 121
Query: 163 GDIEAKSKTAGEEEMIKIRSCAERETKKKDDIPEEDKGNVKQCEINYVKKFQSFQDHKLK 222
DIEAKSKTAGEEEMIKIRSCAERETKKKDDIPEEDKGN+KQCEINYVKKFQSFQDHKLK
Sbjct: 122 EDIEAKSKTAGEEEMIKIRSCAERETKKKDDIPEEDKGNIKQCEINYVKKFQSFQDHKLK 181
Query: 223 ISKEDSKILKKARKDGFLHETLLDR 247
ISKE+SKILKKA+KDGFLHETLLDR
Sbjct: 182 ISKEESKILKKAQKDGFLHETLLDR 206
>gi|239747131 PREDICTED: hypothetical protein XP_002343920 [Homo
sapiens]
Length = 156
Score = 201 bits (512), Expect = 4e-52
Identities = 100/105 (95%), Positives = 102/105 (97%)
Query: 145 GKMALLASNSCFIRCNEAGDIEAKSKTAGEEEMIKIRSCAERETKKKDDIPEEDKGNVKQ 204
GKMALLASN CFIRCNEAGDIEAKSKTAGEEEMIKIRSCAERETKKKDDIPEEDKGNVKQ
Sbjct: 45 GKMALLASNGCFIRCNEAGDIEAKSKTAGEEEMIKIRSCAERETKKKDDIPEEDKGNVKQ 104
Query: 205 CEINYVKKFQSFQDHKLKISKEDSKILKKARKDGFLHETLLDRRA 249
CEINYVKKFQSFQ+HKLKISKEDSKILKKA+KDGFL ETLLDR A
Sbjct: 105 CEINYVKKFQSFQEHKLKISKEDSKILKKAQKDGFLQETLLDRVA 149
Score = 83.2 bits (204), Expect = 2e-16
Identities = 40/45 (88%), Positives = 43/45 (95%)
Query: 1 MAEYSYVKSTKLVLKGTKTKSKKKKSKDKKRKREEDEETQLDIVG 45
MAEYSY KSTKLVLKGTKTKSKKKKSK+KKRKREEDEETQ D++G
Sbjct: 1 MAEYSYAKSTKLVLKGTKTKSKKKKSKEKKRKREEDEETQFDMLG 45
>gi|239758069 PREDICTED: similar to FSHD region gene 1 isoform 2
[Homo sapiens]
Length = 124
Score = 195 bits (496), Expect = 3e-50
Identities = 100/110 (90%), Positives = 103/110 (93%), Gaps = 1/110 (0%)
Query: 138 WEPVFQNGKMALLASNSCFIRCNEAGDIEAKSKTAGEEEMIKIRSCAERETKKKDDIPEE 197
WE + GKMALLAS+SCFIRCNEAGDIEAKSKTAGEEEMIKIRSCAERETKKKDDIP E
Sbjct: 16 WELHTKKGKMALLASDSCFIRCNEAGDIEAKSKTAGEEEMIKIRSCAERETKKKDDIP-E 74
Query: 198 DKGNVKQCEINYVKKFQSFQDHKLKISKEDSKILKKARKDGFLHETLLDR 247
DKGNVKQ EINYVKKFQSFQDHK KISKEDSKILKKA+KDGFLHETLLDR
Sbjct: 75 DKGNVKQYEINYVKKFQSFQDHKPKISKEDSKILKKAQKDGFLHETLLDR 124
>gi|239747178 PREDICTED: hypothetical protein XP_002343932 [Homo
sapiens]
Length = 206
Score = 34.7 bits (78), Expect = 0.085
Identities = 16/23 (69%), Positives = 18/23 (78%)
Query: 3 EYSYVKSTKLVLKGTKTKSKKKK 25
EYS+VKSTKLV KGTK K + K
Sbjct: 163 EYSHVKSTKLVFKGTKAKRRDGK 185
>gi|9966791 fascin 3 [Homo sapiens]
Length = 498
Score = 34.3 bits (77), Expect = 0.11
Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
Query: 75 NGLFTLGAPHKEV--DEGPSPPEQFTAVKLSDSRIALKSGYGKYLGINSDGLVVGRSDAI 132
NG + H+ V D P + F + + RI L+S G++LGI + L++
Sbjct: 314 NGYYLSQRRHRAVMADGHPLESDTFFRMHWNCGRIILQSCRGRFLGIAPNSLLMANVILP 373
Query: 133 GPREQWEPVFQNGKMALLASNSCFIRCNEAGDI 165
GP E++ +F N +L ++ + D+
Sbjct: 374 GPNEEFGILFANRSFLVLRGRYGYVGSSSGHDL 406
>gi|21493045 A-kinase anchor protein 6 [Homo sapiens]
Length = 2319
Score = 33.9 bits (76), Expect = 0.14
Identities = 57/263 (21%), Positives = 99/263 (37%), Gaps = 59/263 (22%)
Query: 3 EYSYVKSTKLVLKGTKTKSKKKKSK-----------DKKRKREEDEETQLDIVGIWWTVT 51
+YSY++ +KL L +S+ +K+ DKK + + + T+L V
Sbjct: 1469 DYSYLQGSKLKLPMIMKQSQSEKAHVEDPLLRGFYFDKKSCKSKHQTTELQP-----DVP 1523
Query: 52 NFGEISGTIAIEMDKGTYIHALDNGLFTLGAPHKEVDEGPSPPEQFTAVKLSDSRIALKS 111
I + + EMD+ +Y FT G +Q + + S S +L
Sbjct: 1524 PHERILASASHEMDRISYKSGNIEKTFT----------GMQNAKQLSLLSHSSSIESLSP 1573
Query: 112 GYGKYLGINSDGLVVGRSDAIGPREQWEPVFQNGKMALLASNSCFIRCNEAGDIEAKSKT 171
G G G+ G+ SD++ E + K SN C+ +GDI S +
Sbjct: 1574 G-GDLFGL---GIFKNGSDSLQRSTSLESWLTSYK-----SNEDLFSCHSSGDISVSSGS 1624
Query: 172 AGEEEMIKIRSCAERETKKKDDIPEEDKGNVKQCEINYVKKFQSFQDHKLKISKEDSKIL 231
GE +K+ D+ +N ++ QS + K+K S D +
Sbjct: 1625 VGE------------LSKRTLDL------------LNRLENIQSPSEQKIKRSVSDITLQ 1660
Query: 232 KKARKDGFLHETLLDRRAKLKAD 254
++K F + LD + + D
Sbjct: 1661 SSSQKMSFTGQMSLDIASSINED 1683
>gi|193788732 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 5 [Homo sapiens]
Length = 2166
Score = 32.3 bits (72), Expect = 0.42
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 13/100 (13%)
Query: 150 LASNSCFIRCNEAGDIEAKSKTAGEEEMIKIRSCAERETKKKDDIPEEDKGNVKQCEINY 209
L+SN C R E+++ AG+EE + + E K D + ++ E+
Sbjct: 1839 LSSNRCHSR-------ESQAAMAGQEETSQDETY---EVKMNHDTEACSEPSLLSTEM-- 1886
Query: 210 VKKFQSFQDHKLKISKEDSKILKKARKDGFLHETLLDRRA 249
+Q ++ +L + +ED + ++++ K GFL L RRA
Sbjct: 1887 -LSYQDDENRQLTLPEEDKRDIRQSPKRGFLRSASLGRRA 1925
>gi|193788728 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 3 [Homo sapiens]
Length = 2179
Score = 32.3 bits (72), Expect = 0.42
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 13/100 (13%)
Query: 150 LASNSCFIRCNEAGDIEAKSKTAGEEEMIKIRSCAERETKKKDDIPEEDKGNVKQCEINY 209
L+SN C R E+++ AG+EE + + E K D + ++ E+
Sbjct: 1852 LSSNRCHSR-------ESQAAMAGQEETSQDETY---EVKMNHDTEACSEPSLLSTEM-- 1899
Query: 210 VKKFQSFQDHKLKISKEDSKILKKARKDGFLHETLLDRRA 249
+Q ++ +L + +ED + ++++ K GFL L RRA
Sbjct: 1900 -LSYQDDENRQLTLPEEDKRDIRQSPKRGFLRSASLGRRA 1938
>gi|193788724 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 2 [Homo sapiens]
Length = 2186
Score = 32.3 bits (72), Expect = 0.42
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 13/100 (13%)
Query: 150 LASNSCFIRCNEAGDIEAKSKTAGEEEMIKIRSCAERETKKKDDIPEEDKGNVKQCEINY 209
L+SN C R E+++ AG+EE + + E K D + ++ E+
Sbjct: 1859 LSSNRCHSR-------ESQAAMAGQEETSQDETY---EVKMNHDTEACSEPSLLSTEM-- 1906
Query: 210 VKKFQSFQDHKLKISKEDSKILKKARKDGFLHETLLDRRA 249
+Q ++ +L + +ED + ++++ K GFL L RRA
Sbjct: 1907 -LSYQDDENRQLTLPEEDKRDIRQSPKRGFLRSASLGRRA 1945
>gi|120433602 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 18 [Homo sapiens]
Length = 2138
Score = 32.3 bits (72), Expect = 0.42
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 13/100 (13%)
Query: 150 LASNSCFIRCNEAGDIEAKSKTAGEEEMIKIRSCAERETKKKDDIPEEDKGNVKQCEINY 209
L+SN C R E+++ AG+EE + + E K D + ++ E+
Sbjct: 1811 LSSNRCHSR-------ESQAAMAGQEETSQDETY---EVKMNHDTEACSEPSLLSTEM-- 1858
Query: 210 VKKFQSFQDHKLKISKEDSKILKKARKDGFLHETLLDRRA 249
+Q ++ +L + +ED + ++++ K GFL L RRA
Sbjct: 1859 -LSYQDDENRQLTLPEEDKRDIRQSPKRGFLRSASLGRRA 1897
>gi|193788548 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 20 [Homo sapiens]
Length = 2127
Score = 32.3 bits (72), Expect = 0.42
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 13/100 (13%)
Query: 150 LASNSCFIRCNEAGDIEAKSKTAGEEEMIKIRSCAERETKKKDDIPEEDKGNVKQCEINY 209
L+SN C R E+++ AG+EE + + E K D + ++ E+
Sbjct: 1800 LSSNRCHSR-------ESQAAMAGQEETSQDETY---EVKMNHDTEACSEPSLLSTEM-- 1847
Query: 210 VKKFQSFQDHKLKISKEDSKILKKARKDGFLHETLLDRRA 249
+Q ++ +L + +ED + ++++ K GFL L RRA
Sbjct: 1848 -LSYQDDENRQLTLPEEDKRDIRQSPKRGFLRSASLGRRA 1886
>gi|193788544 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 19 [Homo sapiens]
Length = 2135
Score = 32.3 bits (72), Expect = 0.42
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 13/100 (13%)
Query: 150 LASNSCFIRCNEAGDIEAKSKTAGEEEMIKIRSCAERETKKKDDIPEEDKGNVKQCEINY 209
L+SN C R E+++ AG+EE + + E K D + ++ E+
Sbjct: 1808 LSSNRCHSR-------ESQAAMAGQEETSQDETY---EVKMNHDTEACSEPSLLSTEM-- 1855
Query: 210 VKKFQSFQDHKLKISKEDSKILKKARKDGFLHETLLDRRA 249
+Q ++ +L + +ED + ++++ K GFL L RRA
Sbjct: 1856 -LSYQDDENRQLTLPEEDKRDIRQSPKRGFLRSASLGRRA 1894
>gi|193788542 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 17 [Homo sapiens]
Length = 2138
Score = 32.3 bits (72), Expect = 0.42
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 13/100 (13%)
Query: 150 LASNSCFIRCNEAGDIEAKSKTAGEEEMIKIRSCAERETKKKDDIPEEDKGNVKQCEINY 209
L+SN C R E+++ AG+EE + + E K D + ++ E+
Sbjct: 1811 LSSNRCHSR-------ESQAAMAGQEETSQDETY---EVKMNHDTEACSEPSLLSTEM-- 1858
Query: 210 VKKFQSFQDHKLKISKEDSKILKKARKDGFLHETLLDRRA 249
+Q ++ +L + +ED + ++++ K GFL L RRA
Sbjct: 1859 -LSYQDDENRQLTLPEEDKRDIRQSPKRGFLRSASLGRRA 1897
>gi|193788540 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 16 [Homo sapiens]
Length = 2138
Score = 32.3 bits (72), Expect = 0.42
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 13/100 (13%)
Query: 150 LASNSCFIRCNEAGDIEAKSKTAGEEEMIKIRSCAERETKKKDDIPEEDKGNVKQCEINY 209
L+SN C R E+++ AG+EE + + E K D + ++ E+
Sbjct: 1811 LSSNRCHSR-------ESQAAMAGQEETSQDETY---EVKMNHDTEACSEPSLLSTEM-- 1858
Query: 210 VKKFQSFQDHKLKISKEDSKILKKARKDGFLHETLLDRRA 249
+Q ++ +L + +ED + ++++ K GFL L RRA
Sbjct: 1859 -LSYQDDENRQLTLPEEDKRDIRQSPKRGFLRSASLGRRA 1897
>gi|193788538 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 15 [Homo sapiens]
Length = 2138
Score = 32.3 bits (72), Expect = 0.42
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 13/100 (13%)
Query: 150 LASNSCFIRCNEAGDIEAKSKTAGEEEMIKIRSCAERETKKKDDIPEEDKGNVKQCEINY 209
L+SN C R E+++ AG+EE + + E K D + ++ E+
Sbjct: 1811 LSSNRCHSR-------ESQAAMAGQEETSQDETY---EVKMNHDTEACSEPSLLSTEM-- 1858
Query: 210 VKKFQSFQDHKLKISKEDSKILKKARKDGFLHETLLDRRA 249
+Q ++ +L + +ED + ++++ K GFL L RRA
Sbjct: 1859 -LSYQDDENRQLTLPEEDKRDIRQSPKRGFLRSASLGRRA 1897
>gi|193788536 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 14 [Homo sapiens]
Length = 2138
Score = 32.3 bits (72), Expect = 0.42
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 13/100 (13%)
Query: 150 LASNSCFIRCNEAGDIEAKSKTAGEEEMIKIRSCAERETKKKDDIPEEDKGNVKQCEINY 209
L+SN C R E+++ AG+EE + + E K D + ++ E+
Sbjct: 1811 LSSNRCHSR-------ESQAAMAGQEETSQDETY---EVKMNHDTEACSEPSLLSTEM-- 1858
Query: 210 VKKFQSFQDHKLKISKEDSKILKKARKDGFLHETLLDRRA 249
+Q ++ +L + +ED + ++++ K GFL L RRA
Sbjct: 1859 -LSYQDDENRQLTLPEEDKRDIRQSPKRGFLRSASLGRRA 1897
>gi|193794832 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoforom 13 [Homo sapiens]
Length = 2144
Score = 32.3 bits (72), Expect = 0.42
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 13/100 (13%)
Query: 150 LASNSCFIRCNEAGDIEAKSKTAGEEEMIKIRSCAERETKKKDDIPEEDKGNVKQCEINY 209
L+SN C R E+++ AG+EE + + E K D + ++ E+
Sbjct: 1817 LSSNRCHSR-------ESQAAMAGQEETSQDETY---EVKMNHDTEACSEPSLLSTEM-- 1864
Query: 210 VKKFQSFQDHKLKISKEDSKILKKARKDGFLHETLLDRRA 249
+Q ++ +L + +ED + ++++ K GFL L RRA
Sbjct: 1865 -LSYQDDENRQLTLPEEDKRDIRQSPKRGFLRSASLGRRA 1903
>gi|193788534 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 12 [Homo sapiens]
Length = 2146
Score = 32.3 bits (72), Expect = 0.42
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 13/100 (13%)
Query: 150 LASNSCFIRCNEAGDIEAKSKTAGEEEMIKIRSCAERETKKKDDIPEEDKGNVKQCEINY 209
L+SN C R E+++ AG+EE + + E K D + ++ E+
Sbjct: 1819 LSSNRCHSR-------ESQAAMAGQEETSQDETY---EVKMNHDTEACSEPSLLSTEM-- 1866
Query: 210 VKKFQSFQDHKLKISKEDSKILKKARKDGFLHETLLDRRA 249
+Q ++ +L + +ED + ++++ K GFL L RRA
Sbjct: 1867 -LSYQDDENRQLTLPEEDKRDIRQSPKRGFLRSASLGRRA 1905
>gi|193788532 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 11 [Homo sapiens]
Length = 2146
Score = 32.3 bits (72), Expect = 0.42
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 13/100 (13%)
Query: 150 LASNSCFIRCNEAGDIEAKSKTAGEEEMIKIRSCAERETKKKDDIPEEDKGNVKQCEINY 209
L+SN C R E+++ AG+EE + + E K D + ++ E+
Sbjct: 1819 LSSNRCHSR-------ESQAAMAGQEETSQDETY---EVKMNHDTEACSEPSLLSTEM-- 1866
Query: 210 VKKFQSFQDHKLKISKEDSKILKKARKDGFLHETLLDRRA 249
+Q ++ +L + +ED + ++++ K GFL L RRA
Sbjct: 1867 -LSYQDDENRQLTLPEEDKRDIRQSPKRGFLRSASLGRRA 1905
>gi|193794830 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 10 [Homo sapiens]
Length = 2155
Score = 32.3 bits (72), Expect = 0.42
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 13/100 (13%)
Query: 150 LASNSCFIRCNEAGDIEAKSKTAGEEEMIKIRSCAERETKKKDDIPEEDKGNVKQCEINY 209
L+SN C R E+++ AG+EE + + E K D + ++ E+
Sbjct: 1828 LSSNRCHSR-------ESQAAMAGQEETSQDETY---EVKMNHDTEACSEPSLLSTEM-- 1875
Query: 210 VKKFQSFQDHKLKISKEDSKILKKARKDGFLHETLLDRRA 249
+Q ++ +L + +ED + ++++ K GFL L RRA
Sbjct: 1876 -LSYQDDENRQLTLPEEDKRDIRQSPKRGFLRSASLGRRA 1914
>gi|193788530 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 9 [Homo sapiens]
Length = 2157
Score = 32.3 bits (72), Expect = 0.42
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 13/100 (13%)
Query: 150 LASNSCFIRCNEAGDIEAKSKTAGEEEMIKIRSCAERETKKKDDIPEEDKGNVKQCEINY 209
L+SN C R E+++ AG+EE + + E K D + ++ E+
Sbjct: 1830 LSSNRCHSR-------ESQAAMAGQEETSQDETY---EVKMNHDTEACSEPSLLSTEM-- 1877
Query: 210 VKKFQSFQDHKLKISKEDSKILKKARKDGFLHETLLDRRA 249
+Q ++ +L + +ED + ++++ K GFL L RRA
Sbjct: 1878 -LSYQDDENRQLTLPEEDKRDIRQSPKRGFLRSASLGRRA 1916
>gi|193788528 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 8 [Homo sapiens]
Length = 2157
Score = 32.3 bits (72), Expect = 0.42
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 13/100 (13%)
Query: 150 LASNSCFIRCNEAGDIEAKSKTAGEEEMIKIRSCAERETKKKDDIPEEDKGNVKQCEINY 209
L+SN C R E+++ AG+EE + + E K D + ++ E+
Sbjct: 1830 LSSNRCHSR-------ESQAAMAGQEETSQDETY---EVKMNHDTEACSEPSLLSTEM-- 1877
Query: 210 VKKFQSFQDHKLKISKEDSKILKKARKDGFLHETLLDRRA 249
+Q ++ +L + +ED + ++++ K GFL L RRA
Sbjct: 1878 -LSYQDDENRQLTLPEEDKRDIRQSPKRGFLRSASLGRRA 1916
>gi|193794828 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 7 [Homo sapiens]
Length = 2157
Score = 32.3 bits (72), Expect = 0.42
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 13/100 (13%)
Query: 150 LASNSCFIRCNEAGDIEAKSKTAGEEEMIKIRSCAERETKKKDDIPEEDKGNVKQCEINY 209
L+SN C R E+++ AG+EE + + E K D + ++ E+
Sbjct: 1830 LSSNRCHSR-------ESQAAMAGQEETSQDETY---EVKMNHDTEACSEPSLLSTEM-- 1877
Query: 210 VKKFQSFQDHKLKISKEDSKILKKARKDGFLHETLLDRRA 249
+Q ++ +L + +ED + ++++ K GFL L RRA
Sbjct: 1878 -LSYQDDENRQLTLPEEDKRDIRQSPKRGFLRSASLGRRA 1916
>gi|193788526 calcium channel, voltage-dependent, L type, alpha 1C
subunit isoform 6 [Homo sapiens]
Length = 2158
Score = 32.3 bits (72), Expect = 0.42
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 13/100 (13%)
Query: 150 LASNSCFIRCNEAGDIEAKSKTAGEEEMIKIRSCAERETKKKDDIPEEDKGNVKQCEINY 209
L+SN C R E+++ AG+EE + + E K D + ++ E+
Sbjct: 1831 LSSNRCHSR-------ESQAAMAGQEETSQDETY---EVKMNHDTEACSEPSLLSTEM-- 1878
Query: 210 VKKFQSFQDHKLKISKEDSKILKKARKDGFLHETLLDRRA 249
+Q ++ +L + +ED + ++++ K GFL L RRA
Sbjct: 1879 -LSYQDDENRQLTLPEEDKRDIRQSPKRGFLRSASLGRRA 1917
>gi|4507115 fascin 1 [Homo sapiens]
Length = 493
Score = 32.0 bits (71), Expect = 0.55
Identities = 17/76 (22%), Positives = 39/76 (51%)
Query: 106 RIALKSGYGKYLGINSDGLVVGRSDAIGPREQWEPVFQNGKMALLASNSCFIRCNEAGDI 165
+ A ++ GKY + + G V + + ++ +++ ++ L ASN F+ + G +
Sbjct: 304 KCAFRTHTGKYWTLTATGGVQSTASSKNASCYFDIEWRDRRITLRASNGKFVTSKKNGQL 363
Query: 166 EAKSKTAGEEEMIKIR 181
A +TAG+ E+ ++
Sbjct: 364 AASVETAGDSELFLMK 379
>gi|14589862 aspartate beta-hydroxylase isoform d [Homo sapiens]
Length = 210
Score = 31.6 bits (70), Expect = 0.72
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Query: 165 IEAKSKTAGEEEMIKIRSCAERETKKKDDIPEEDKGNVKQCEINYVKKFQSFQDHKLKIS 224
+E S A + K++ + E KK+ + PE K + K E KK +D K+ +
Sbjct: 78 LEGPSGVAKRKTKAKVKELTKEELKKEKEKPESRKES-KNEERKKGKKEDVRKDKKIADA 136
Query: 225 KEDSKILKKARKDGFLHETLLDRRAKLKADR 255
K K +KD + L++ AK K +R
Sbjct: 137 DLSRKESPKGKKDREKEKVDLEKSAKTKENR 167
>gi|9910364 aspartate beta-hydroxylase isoform e [Homo sapiens]
Length = 225
Score = 31.6 bits (70), Expect = 0.72
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Query: 165 IEAKSKTAGEEEMIKIRSCAERETKKKDDIPEEDKGNVKQCEINYVKKFQSFQDHKLKIS 224
+E S A + K++ + E KK+ + PE K + K E KK +D K+ +
Sbjct: 93 LEGPSGVAKRKTKAKVKELTKEELKKEKEKPESRKES-KNEERKKGKKEDVRKDKKIADA 151
Query: 225 KEDSKILKKARKDGFLHETLLDRRAKLKADR 255
K K +KD + L++ AK K +R
Sbjct: 152 DLSRKESPKGKKDREKEKVDLEKSAKTKENR 182
>gi|4759100 splicing factor, arginine/serine-rich 11 [Homo sapiens]
Length = 484
Score = 31.6 bits (70), Expect = 0.72
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 18 KTKSKKKKSKDKKRKREEDEETQLDI 43
++ SKKKKSKDK++ RE E+ D+
Sbjct: 393 RSTSKKKKSKDKEKDRERKSESDKDV 418
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.131 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,673,777
Number of Sequences: 37866
Number of extensions: 440994
Number of successful extensions: 3179
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 2880
Number of HSP's gapped (non-prelim): 296
length of query: 258
length of database: 18,247,518
effective HSP length: 100
effective length of query: 158
effective length of database: 14,460,918
effective search space: 2284825044
effective search space used: 2284825044
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.