Search of human proteins with 46593007

Search of human proteins with 46593007

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|46593007 ubiquinol-cytochrome c reductase core protein I
[Homo sapiens]
         (480 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|46593007 ubiquinol-cytochrome c reductase core protein I [Hom...   965   0.0  
gi|94538354 mitochondrial processing peptidase beta subunit prec...   544   e-155
gi|24308013 peptidase (mitochondrial processing) alpha [Homo sap...   166   6e-41
gi|50592988 ubiquinol-cytochrome c reductase core protein II [Ho...   100   2e-21
gi|156071452 nardilysin isoform b [Homo sapiens]                       44   3e-04
gi|155969707 insulin-degrading enzyme [Homo sapiens]                   43   6e-04
gi|156071450 nardilysin isoform a [Homo sapiens]                       42   0.001
gi|148596984 golgi autoantigen, golgin subfamily b, macrogolgin ...    32   1.7  
gi|114155142 nuclear pore complex-associated protein TPR [Homo s...    31   2.2  
gi|82617626 paralemmin 2 isoform b [Homo sapiens]                      31   2.2  
gi|82524851 paralemmin 2 isoform a [Homo sapiens]                      30   4.9  
gi|149773456 hypothetical protein LOC643314 [Homo sapiens]             30   6.3  
gi|153792669 cholinergic receptor, nicotinic, alpha polypeptide ...    30   6.3  
gi|22325356 PALM2-AKAP2 protein isoform 2 [Homo sapiens]               30   6.3  
gi|6005709 PALM2-AKAP2 protein isoform 1 [Homo sapiens]                30   6.3  
gi|126012497 dynein, axonemal, heavy polypeptide 8 [Homo sapiens]      29   8.3  

>gi|46593007 ubiquinol-cytochrome c reductase core protein I [Homo
           sapiens]
          Length = 480

 Score =  965 bits (2494), Expect = 0.0
 Identities = 480/480 (100%), Positives = 480/480 (100%)

Query: 1   MAASVVCRAATAGAQVLLRARRSPALLRTPALRSTATFAQALQFVPETQVSLLDNGLRVA 60
           MAASVVCRAATAGAQVLLRARRSPALLRTPALRSTATFAQALQFVPETQVSLLDNGLRVA
Sbjct: 1   MAASVVCRAATAGAQVLLRARRSPALLRTPALRSTATFAQALQFVPETQVSLLDNGLRVA 60

Query: 61  SEQSSQPTCTVGVWIDVGSRFETEKNNGAGYFLEHLAFKGTKNRPGSALEKEVESMGAHL 120
           SEQSSQPTCTVGVWIDVGSRFETEKNNGAGYFLEHLAFKGTKNRPGSALEKEVESMGAHL
Sbjct: 61  SEQSSQPTCTVGVWIDVGSRFETEKNNGAGYFLEHLAFKGTKNRPGSALEKEVESMGAHL 120

Query: 121 NAYSTREHTAYYIKALSKDLPKAVELLGDIVQNCSLEDSQIEKERDVILREMQENDASMR 180
           NAYSTREHTAYYIKALSKDLPKAVELLGDIVQNCSLEDSQIEKERDVILREMQENDASMR
Sbjct: 121 NAYSTREHTAYYIKALSKDLPKAVELLGDIVQNCSLEDSQIEKERDVILREMQENDASMR 180

Query: 181 DVVFNYLHATAFQGTPLAQAVEGPSENVRKLSRADLTEYLSTHYKAPRMVLAAAGGVEHQ 240
           DVVFNYLHATAFQGTPLAQAVEGPSENVRKLSRADLTEYLSTHYKAPRMVLAAAGGVEHQ
Sbjct: 181 DVVFNYLHATAFQGTPLAQAVEGPSENVRKLSRADLTEYLSTHYKAPRMVLAAAGGVEHQ 240

Query: 241 QLLDLAQKHLGGIPWTYAEDAVPTLTPCRFTGSEIRHRDDALPFAHVAIAVEGPGWASPD 300
           QLLDLAQKHLGGIPWTYAEDAVPTLTPCRFTGSEIRHRDDALPFAHVAIAVEGPGWASPD
Sbjct: 241 QLLDLAQKHLGGIPWTYAEDAVPTLTPCRFTGSEIRHRDDALPFAHVAIAVEGPGWASPD 300

Query: 301 NVALQVANAIIGHYDCTYGGGVHLSSPLASGAVANKLCQSFQTFSICYAETGLLGAHFVC 360
           NVALQVANAIIGHYDCTYGGGVHLSSPLASGAVANKLCQSFQTFSICYAETGLLGAHFVC
Sbjct: 301 NVALQVANAIIGHYDCTYGGGVHLSSPLASGAVANKLCQSFQTFSICYAETGLLGAHFVC 360

Query: 361 DRMKIDDMMFVLQGQWMRLCTSATESEVARGKNILRNALVSHLDGTTPVCEDIGRSLLTY 420
           DRMKIDDMMFVLQGQWMRLCTSATESEVARGKNILRNALVSHLDGTTPVCEDIGRSLLTY
Sbjct: 361 DRMKIDDMMFVLQGQWMRLCTSATESEVARGKNILRNALVSHLDGTTPVCEDIGRSLLTY 420

Query: 421 GRRIPLAEWESRIAEVDASVVREICSKYIYDQCPAVAGYGPIEQLPDYNRIRSGMFWLRF 480
           GRRIPLAEWESRIAEVDASVVREICSKYIYDQCPAVAGYGPIEQLPDYNRIRSGMFWLRF
Sbjct: 421 GRRIPLAEWESRIAEVDASVVREICSKYIYDQCPAVAGYGPIEQLPDYNRIRSGMFWLRF 480


>gi|94538354 mitochondrial processing peptidase beta subunit
           precursor [Homo sapiens]
          Length = 489

 Score =  544 bits (1402), Expect = e-155
 Identities = 258/448 (57%), Positives = 341/448 (76%), Gaps = 1/448 (0%)

Query: 32  LRSTATFAQALQFVPETQVSLLDNGLRVASEQSSQPTCTVGVWIDVGSRFETEKNNGAGY 91
           LRST    Q +  VPET+V+ L++GLRVASE S   TCTVG+WID GSR+E EKNNG  +
Sbjct: 42  LRSTQAATQVVLNVPETRVTCLESGLRVASEDSGLSTCTVGLWIDAGSRYENEKNNGTAH 101

Query: 92  FLEHLAFKGTKNRPGSALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVELLGDIV 151
           FLEH+AFKGTK R    LE E+E+MGAHLNAY++RE T YY KA SKDLP+AVE+L DI+
Sbjct: 102 FLEHMAFKGTKKRSQLDLELEIENMGAHLNAYTSREQTVYYAKAFSKDLPRAVEILADII 161

Query: 152 QNCSLEDSQIEKERDVILREMQENDASMRDVVFNYLHATAFQGTPLAQAVEGPSENVRKL 211
           QN +L +++IE+ER VILREMQE + ++++VVF+YLHATA+Q T L + + GP+EN++ +
Sbjct: 162 QNSTLGEAEIERERGVILREMQEVETNLQEVVFDYLHATAYQNTALGRTILGPTENIKSI 221

Query: 212 SRADLTEYLSTHYKAPRMVLAAAGGVEHQQLLDLAQKHLGGIPWTYAEDAVPTLTPCRFT 271
           SR DL +Y++THYK PR+VLAAAGGV H +LLDLA+ H G    T+ +  +P L PC+FT
Sbjct: 222 SRKDLVDYITTHYKGPRIVLAAAGGVSHDELLDLAKFHFGDSLCTH-KGEIPALPPCKFT 280

Query: 272 GSEIRHRDDALPFAHVAIAVEGPGWASPDNVALQVANAIIGHYDCTYGGGVHLSSPLASG 331
           GSEIR RDD +P AH+AIAVE  GWA PD + L VAN +IG++D ++GGG++LSS LA  
Sbjct: 281 GSEIRVRDDKMPLAHLAIAVEAVGWAHPDTICLMVANTLIGNWDRSFGGGMNLSSKLAQL 340

Query: 332 AVANKLCQSFQTFSICYAETGLLGAHFVCDRMKIDDMMFVLQGQWMRLCTSATESEVARG 391
                LC SFQ+F+  Y +TGL G + VC+   + DM+ V+Q +WMRLCTS TESEVAR 
Sbjct: 341 TCHGNLCHSFQSFNTSYTDTGLWGLYMVCESSTVADMLHVVQKEWMRLCTSVTESEVARA 400

Query: 392 KNILRNALVSHLDGTTPVCEDIGRSLLTYGRRIPLAEWESRIAEVDASVVREICSKYIYD 451
           +N+L+  ++  LDG+TP+CEDIGR +L Y RRIP+ E E+RI  V+A  +RE+C+KYIY+
Sbjct: 401 RNLLKTNMLLQLDGSTPICEDIGRQMLCYNRRIPIPELEARIDAVNAETIREVCTKYIYN 460

Query: 452 QCPAVAGYGPIEQLPDYNRIRSGMFWLR 479
           + PA+A  GPI+QLPD+ +IRS M WLR
Sbjct: 461 RSPAIAAVGPIKQLPDFKQIRSNMCWLR 488


>gi|24308013 peptidase (mitochondrial processing) alpha [Homo
           sapiens]
          Length = 525

 Score =  166 bits (419), Expect = 6e-41
 Identities = 134/456 (29%), Positives = 219/456 (48%), Gaps = 38/456 (8%)

Query: 47  ETQVSLLDNGLRVASEQSSQPTCTVGVWIDVGSRFETEKNNGAGYFLEHLAFKGTKNRPG 106
           ET+V+ LDNGLRVAS+      CTVG+ I+ GSR+E +  +G  +FLE LAF  T     
Sbjct: 66  ETKVTTLDNGLRVASQNKFGQFCTVGILINSGSRYEAKYLSGIAHFLEKLAFSSTARFDS 125

Query: 107 -SALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVELLGDIVQNCSLEDSQIEKER 165
              +   +E  G   +  ++R+ T Y + A SK L   V LL D+V    L D ++E  R
Sbjct: 126 KDEILLTLEKHGGICDCQTSRDTTMYAVSADSKGLDTVVALLADVVLQPRLTDEEVEMTR 185

Query: 166 DVILREMQENDASMR----DVVFNYLHATAFQGTPLAQAVEGPSENVRKLSRADLTEYLS 221
             +  E++  D ++R     ++   +H  A++   +      P+ENV K++R  L  YL 
Sbjct: 186 MAVQFELE--DLNLRPDPEPLLTEMIHEAAYRENTVGLHRFCPTENVAKINREVLHSYLR 243

Query: 222 THYKAPRMVLAAAGGVEHQQLLDLAQKHLGGI--PWTYAEDAVPTLTPCRFTG------- 272
            +Y   RMVLA   GVEH+ L+D A+K+L G+   W  AE      +  ++TG       
Sbjct: 244 NYYTPDRMVLAGV-GVEHEHLVDCARKYLLGVQPAWGSAEAVDIDRSVAQYTGGIAKLER 302

Query: 273 --SEIRHRDDALP-FAHVAIAVEGPGWASPDNVALQVANAIIGHYDCTYGGGVHLSSPLA 329
             S +      +P   H+ + +E   +   D +   V N ++G      GGG   +    
Sbjct: 303 DMSNVSLGPTPIPELTHIMVGLESCSFLEEDFIPFAVLNMMMG------GGGSFSAGGPG 356

Query: 330 SGA-------VANKLCQSFQTFSI--CYAETGLLGAHFVCDRMKIDDMMFVLQGQWMRLC 380
            G        V N+    +   S    Y +TGLL  H   D  ++ +M+ ++  +++ + 
Sbjct: 357 KGMFSRLYLNVLNRHHWMYNATSYHHSYEDTGLLCIHASADPRQVREMVEIITKEFILMG 416

Query: 381 TSATESEVARGKNILRNALVSHLDGTTPVCEDIGRSLL-TYGRRIPLAEWESRIAEVDAS 439
            +    E+ R K  L + L+ +L+    + ED+GR +L T  R++P  E  + I  V   
Sbjct: 417 GTVDTVELERAKTQLTSMLMMNLESRPVIFEDVGRQVLATRSRKLP-HELCTLIRNVKPE 475

Query: 440 VVREICSKYIYDQCPAVAGYGPIEQLPDYNRIRSGM 475
            V+ + SK +  + PAVA  G +  LP Y  I++ +
Sbjct: 476 DVKRVASKMLRGK-PAVAALGDLTDLPTYEHIQTAL 510


>gi|50592988 ubiquinol-cytochrome c reductase core protein II [Homo
           sapiens]
          Length = 453

 Score =  100 bits (250), Expect = 2e-21
 Identities = 98/442 (22%), Positives = 190/442 (42%), Gaps = 18/442 (4%)

Query: 30  PALRSTATFAQALQFVPETQVSLLDNGLRVASEQSSQPTCTVGVWIDVGSRFETEKNNGA 89
           P +++TA  A A     + + + L NGL +AS ++  P   +G++I  GSR+E   N G 
Sbjct: 20  PKVKATAAPAGAPPQPQDLEFTKLPNGLVIASLENYSPVSRIGLFIKAGSRYEDFSNLGT 79

Query: 90  GYFLEHLAFKGTKNRPGSALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVELLGD 149
            + L   +   TK      + + +E++G  L+  +TRE+ AY ++ L  D+   +E L +
Sbjct: 80  THLLRLTSSLTTKGASSFKITRGIEAVGGKLSVTATRENMAYTVECLRGDVDILMEFLLN 139

Query: 150 IVQNCSLEDSQIEKERDVILREMQENDASMRDVVFNYLHATAFQGTPLAQAVEGPSENVR 209
           +         ++   +  +  +      + +  V   LHA A++   LA  +  P   + 
Sbjct: 140 VTTAPEFRRWEVADLQPQLKIDKAVAFQNPQTHVIENLHAAAYRNA-LANPLYCPDYRIG 198

Query: 210 KLSRADLTEYLSTHYKAPRMVLAAAGGVEHQQLLDLAQKHL---GGIPWTYAEDAVPTLT 266
           K++  +L  ++  H+ + RM L    GV H  L  +A++ L   GG+  + A+       
Sbjct: 199 KVTSEELHYFVQNHFTSARMALIGL-GVSHPVLKQVAEQFLNMRGGLGLSGAK------- 250

Query: 267 PCRFTGSEIRHRD-DALPFAHVAIAVEGPGWASPDNVALQVANAIIGHYDCTYGGGVHLS 325
              + G EIR ++ D+L   H A   E     S +  A  V   ++G       G    S
Sbjct: 251 -ANYRGGEIREQNGDSL--VHAAFVAESAVAGSAEANAFSVLQHVLGAGPHVKRGSNTTS 307

Query: 326 SPLASGAVANKLCQSFQTFSICYAETGLLGAHFVCDRMKIDDMMFVLQGQWMRLCT-SAT 384
               + A A +       F+  Y+++GL G + +       D++     Q   +   + +
Sbjct: 308 HLHQAVAKATQQPFDVSAFNASYSDSGLFGIYTISQATAAGDVIKAAYNQVKTIAQGNLS 367

Query: 385 ESEVARGKNILRNALVSHLDGTTPVCEDIGRSLLTYGRRIPLAEWESRIAEVDASVVREI 444
            ++V   KN L+   +  ++ +    E++G   L  G  +P +    +I  V  + +   
Sbjct: 368 NTDVQAAKNKLKAGYLMSVESSECFLEEVGSQALVAGSYMPPSTVLQQIDSVANADIINA 427

Query: 445 CSKYIYDQCPAVAGYGPIEQLP 466
             K++  Q  ++A  G +   P
Sbjct: 428 AKKFVSGQ-KSMAASGNLGHTP 448


>gi|156071452 nardilysin isoform b [Homo sapiens]
          Length = 1151

 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 43/200 (21%), Positives = 88/200 (44%), Gaps = 18/200 (9%)

Query: 60  ASEQSSQPTCTVGVWIDVGSRFETEKNNGAGYFLEHLAFKGTKNRPG-SALEKEVESMGA 118
           A +++++      + + VGS  + +   G  +FLEH+ F G+   P  +  +  ++  G 
Sbjct: 202 ARKKTTEKQSAAALCVGVGSFADPDDLPGLAHFLEHMVFMGSLKYPDENGFDAFLKKHGG 261

Query: 119 HLNAYSTREHTAYYIKALSKDLPKAVELLGDIVQNCSLEDSQIEKERDVILREMQ---EN 175
             NA +  E T +      K   +A++       +  +    I++E + +  E Q    +
Sbjct: 262 SDNASTDCERTVFQFDVQRKYFKEALDRWAQFFIHPLMIRDAIDREVEAVDSEYQLARPS 321

Query: 176 DASMRDVVFNYLHATAFQGTPLAQAVEGPSENVRKLSR-------ADLTEYLSTHYKAPR 228
           DA+ ++++F  L   A  G P+ +   G +E ++   R       A L E+   +Y +  
Sbjct: 322 DANRKEMLFGSL---ARPGHPMGKFFWGNAETLKHEPRKNNIDTHARLREFWMRYYSSHY 378

Query: 229 MVLAAAGGVEHQQLLDLAQK 248
           M L     V+ ++ LD  +K
Sbjct: 379 MTLV----VQSKETLDTLEK 394


>gi|155969707 insulin-degrading enzyme [Homo sapiens]
          Length = 1019

 Score = 43.1 bits (100), Expect = 6e-04
 Identities = 45/207 (21%), Positives = 83/207 (40%), Gaps = 13/207 (6%)

Query: 53  LDNGLRVASEQSSQPTC---TVGVWIDVGSRFETEKNNGAGYFLEHLAFKGTKNRP-GSA 108
           L NG++V     S PT    +  + + +GS  +     G  +F EH+ F GTK  P  + 
Sbjct: 69  LANGIKVLL--ISDPTTDKSSAALDVHIGSLSDPPNIAGLSHFCEHMLFLGTKKYPKENE 126

Query: 109 LEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVELLGDIVQNCSLEDSQIEKERDVI 168
             + +       NA+++ EHT YY     + L  A++           ++S  ++E + +
Sbjct: 127 YSQFLSEHAGSSNAFTSGEHTNYYFDVSHEHLEGALDRFAQFFLCPLFDESCKDREVNAV 186

Query: 169 LREMQENDASMRDVVFNYLHATAFQGTPLAQAVEGPSENVRKLS-------RADLTEYLS 221
             E ++N  +    +F    AT     P ++   G    +           R +L ++ S
Sbjct: 187 DSEHEKNVMNDAWRLFQLEKATGNPKHPFSKFGTGNKYTLETRPNQEGIDVRQELLKFHS 246

Query: 222 THYKAPRMVLAAAGGVEHQQLLDLAQK 248
            +Y +  M +   G      L +L  K
Sbjct: 247 AYYSSNLMAVCVLGRESLDDLTNLVVK 273


>gi|156071450 nardilysin isoform a [Homo sapiens]
          Length = 1219

 Score = 42.0 bits (97), Expect = 0.001
 Identities = 42/185 (22%), Positives = 81/185 (43%), Gaps = 18/185 (9%)

Query: 75  IDVGSRFETEKNNGAGYFLEHLAFKGTKNRPG-SALEKEVESMGAHLNAYSTREHTAYYI 133
           + VGS  + +   G  +FLEH+ F G+   P  +  +  ++  G   NA +  E T +  
Sbjct: 285 VGVGSFADPDDLPGLAHFLEHMVFMGSLKYPDENGFDAFLKKHGGSDNASTDCERTVFQF 344

Query: 134 KALSKDLPKAVELLGDIVQNCSLEDSQIEKERDVILREMQ---ENDASMRDVVFNYLHAT 190
               K   +A++       +  +    I++E + +  E Q    +DA+ ++++F  L   
Sbjct: 345 DVQRKYFKEALDRWAQFFIHPLMIRDAIDREVEAVDSEYQLARPSDANRKEMLFGSL--- 401

Query: 191 AFQGTPLAQAVEGPSENVRKLSR-------ADLTEYLSTHYKAPRMVLAAAGGVEHQQLL 243
           A  G P+ +   G +E ++   R       A L E+   +Y +  M L     V+ ++ L
Sbjct: 402 ARPGHPMGKFFWGNAETLKHEPRKNNIDTHARLREFWMRYYSSHYMTLV----VQSKETL 457

Query: 244 DLAQK 248
           D  +K
Sbjct: 458 DTLEK 462


>gi|148596984 golgi autoantigen, golgin subfamily b, macrogolgin (with
            transmembrane signal), 1 [Homo sapiens]
          Length = 3259

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 7/121 (5%)

Query: 109  LEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVELLGDIVQNCSLEDSQIEKERDVI 168
            L KE+ES+ +   A ST     +      K+L K  E+L    +N S E  +I+   + +
Sbjct: 1586 LVKEIESLKSSKIAESTEWQEKH------KELQKEYEILLQSYENVSNEAERIQHVVEAV 1639

Query: 169  LREMQENDASMRDVVFNYLHATAFQGTPLAQAVEGPSENVRKLSRADLTEYLSTHYKAPR 228
             +E QE    +R    N    T  Q     Q +E   E +RK +++   + L    +  R
Sbjct: 1640 RQEKQELYGKLRSTEAN-KKETEKQLQEAEQEMEEMKEKMRKFAKSKQQKILELEEENDR 1698

Query: 229  M 229
            +
Sbjct: 1699 L 1699


>gi|114155142 nuclear pore complex-associated protein TPR [Homo
           sapiens]
          Length = 2363

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 37/140 (26%), Positives = 63/140 (45%), Gaps = 20/140 (14%)

Query: 79  SRFETEKNNGAGYFLEHLA---------FKGTKNRPGSALEKEVESMGAHLNAYSTREHT 129
           SR E E+ NG     EHL           K  K +  S  EK    + AH+   +  +  
Sbjct: 234 SRLE-EQMNGLKTSNEHLQKHVEDLLTKLKEAKEQQASMEEKFHNELNAHIKLSNLYKSA 292

Query: 130 AYYIKALSKDLPKAVELLGDIVQ-----NCSLEDS--QIEKERDVILREMQENDASMRDV 182
           A   +A S +L +AVE L  +++     N +++D   ++E+ +D + +EM E    +   
Sbjct: 293 ADDSEAKSNELTRAVEELHKLLKEAGEANKAIQDHLLEVEQSKDQMEKEMLEKIGRLEKE 352

Query: 183 VFN---YLHATAFQGTPLAQ 199
           + N    L AT  +G  L++
Sbjct: 353 LENANDLLSATKRKGAILSE 372


>gi|82617626 paralemmin 2 isoform b [Homo sapiens]
          Length = 379

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 8/93 (8%)

Query: 138 KDLPKAVELLGDIVQNCSLEDSQIEKERDVILREMQENDASMRDVVFNYLHATAFQGTPL 197
           K L   ++ L   +Q    E+SQI  +  +IL +++E + S +D          F  T  
Sbjct: 80  KQLEDNIQRLEQEIQTLESEESQISAKEQIILEKLKETEKSFKD------FQKGFSSTD- 132

Query: 198 AQAVEGPSENVRKLSRADLTEYLSTHYKAPRMV 230
             AV     NV K  +   T+ LST    P  V
Sbjct: 133 -GAVYAMEINVEKDKQTGETKILSTSTIGPEGV 164


>gi|82524851 paralemmin 2 isoform a [Homo sapiens]
          Length = 413

 Score = 30.0 bits (66), Expect = 4.9
 Identities = 29/119 (24%), Positives = 44/119 (36%), Gaps = 26/119 (21%)

Query: 138 KDLPKAVELLGDIVQNCSLEDSQIEKERDVILREMQENDASMRDV----------VFNYL 187
           K L   ++ L   +Q    E+SQI  +  +IL +++E + S +D             NY+
Sbjct: 80  KQLEDNIQRLEQEIQTLESEESQISAKEQIILEKLKETEKSFKDFQKGFSSTDGDAVNYI 139

Query: 188 H----------------ATAFQGTPLAQAVEGPSENVRKLSRADLTEYLSTHYKAPRMV 230
                            +    GT  A AV     NV K  +   T+ LST    P  V
Sbjct: 140 SSQLPDLPILCSRTAEPSPGQDGTSRAAAVYAMEINVEKDKQTGETKILSTSTIGPEGV 198


>gi|149773456 hypothetical protein LOC643314 [Homo sapiens]
          Length = 1427

 Score = 29.6 bits (65), Expect = 6.3
 Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 4/54 (7%)

Query: 106 GSALEKEVESMGAHLNA--YSTREHTAYYIKALSKDLPKAVELLG--DIVQNCS 155
           G+ALEKE      H+ A  Y TR    Y+    S  +P AVEL+   DI+++ S
Sbjct: 512 GAALEKEQHLGLLHVRAKDYDTRLDCGYFNTLDSSQVPNAVELIAHVDIMRDTS 565


>gi|153792669 cholinergic receptor, nicotinic, alpha polypeptide 2
           (neuronal) [Homo sapiens]
          Length = 529

 Score = 29.6 bits (65), Expect = 6.3
 Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 10/88 (11%)

Query: 289 IAVEGPGWASPDNVALQVANAIIGHYDCTYGGGVHLSSPLASGAVANKLCQSFQTFSICY 348
           +  E   WA   +VA  V         C++G   HL S  ASG  A  L Q  +     +
Sbjct: 416 VVEEEDRWACAGHVAPSVGTL------CSHG---HLHSG-ASGPKAEALLQEGELLLSPH 465

Query: 349 AETGLLGAHFVCDRMKIDDMMFVLQGQW 376
            +  L G H++ D ++ +D    ++  W
Sbjct: 466 MQKALEGVHYIADHLRSEDADSSVKEDW 493


>gi|22325356 PALM2-AKAP2 protein isoform 2 [Homo sapiens]
          Length = 1090

 Score = 29.6 bits (65), Expect = 6.3
 Identities = 13/44 (29%), Positives = 24/44 (54%)

Query: 138 KDLPKAVELLGDIVQNCSLEDSQIEKERDVILREMQENDASMRD 181
           K L   ++ L   +Q    E+SQI  +  +IL +++E + S +D
Sbjct: 78  KQLEDNIQRLEQEIQTLESEESQISAKEQIILEKLKETEKSFKD 121


>gi|6005709 PALM2-AKAP2 protein isoform 1 [Homo sapiens]
          Length = 1103

 Score = 29.6 bits (65), Expect = 6.3
 Identities = 13/44 (29%), Positives = 24/44 (54%)

Query: 138 KDLPKAVELLGDIVQNCSLEDSQIEKERDVILREMQENDASMRD 181
           K L   ++ L   +Q    E+SQI  +  +IL +++E + S +D
Sbjct: 78  KQLEDNIQRLEQEIQTLESEESQISAKEQIILEKLKETEKSFKD 121


>gi|126012497 dynein, axonemal, heavy polypeptide 8 [Homo sapiens]
          Length = 4490

 Score = 29.3 bits (64), Expect = 8.3
 Identities = 29/104 (27%), Positives = 44/104 (42%), Gaps = 13/104 (12%)

Query: 101  TKNRPGSALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVELLGDIVQNC------ 154
            T    G  L+KE  S    + A   +    Y   A  KD+ K V LL   V +       
Sbjct: 945  THQNTGKLLKKEERSFEEAIPARKLKNF--YPGVAEHKDISKLVLLLSSSVNSLRKAAHE 1002

Query: 155  SLEDSQIEK-----ERDVILREMQENDASMRDVVFNYLHATAFQ 193
            +L+D Q  K     +RDV ++E   N+ S+ ++    LH   F+
Sbjct: 1003 ALQDFQKYKTLWTEDRDVKVKEFLANNPSLTEIRSEILHYATFE 1046


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.133    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,874,774
Number of Sequences: 37866
Number of extensions: 776563
Number of successful extensions: 1798
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1781
Number of HSP's gapped (non-prelim): 17
length of query: 480
length of database: 18,247,518
effective HSP length: 106
effective length of query: 374
effective length of database: 14,233,722
effective search space: 5323412028
effective search space used: 5323412028
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.