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Search of human proteins with 46485773
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|46485773 syncytin 2 [Homo sapiens]
(538 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|46485773 syncytin 2 [Homo sapiens] 1105 0.0
gi|195963433 syncytin precursor [Homo sapiens] 187 2e-47
gi|48949851 syncytin precursor [Homo sapiens] 187 2e-47
gi|239753837 PREDICTED: similar to Uncharacterized protein LP905... 73 8e-13
gi|239748400 PREDICTED: hypothetical protein XP_002346661 [Homo ... 73 8e-13
gi|239742330 PREDICTED: hypothetical protein XP_002342492 [Homo ... 73 8e-13
gi|145651814 endogenous retroviral sequence 3 [Homo sapiens] 59 1e-08
gi|40805854 isthmin 2 homolog isoform 3 [Homo sapiens] 33 0.86
gi|40805858 isthmin 2 homolog isoform 1 [Homo sapiens] 33 0.86
gi|19115954 dynein, axonemal, heavy chain 5 [Homo sapiens] 31 3.3
gi|50843948 Rho GTPase activating protein 10 [Homo sapiens] 30 7.3
gi|168823443 RAD54-like 2 [Homo sapiens] 30 7.3
gi|6912396 glyoxylate reductase/hydroxypyruvate reductase [Homo ... 29 9.5
gi|122937269 Wilms tumor 1 interacting protein [Homo sapiens] 29 9.5
>gi|46485773 syncytin 2 [Homo sapiens]
Length = 538
Score = 1105 bits (2859), Expect = 0.0
Identities = 538/538 (100%), Positives = 538/538 (100%)
Query: 1 MGLLLLVLILTPSLAAYRHPDFPLLEKAQQLLQSTGSPYSTNCWLCTSSSTETPGTAYPA 60
MGLLLLVLILTPSLAAYRHPDFPLLEKAQQLLQSTGSPYSTNCWLCTSSSTETPGTAYPA
Sbjct: 1 MGLLLLVLILTPSLAAYRHPDFPLLEKAQQLLQSTGSPYSTNCWLCTSSSTETPGTAYPA 60
Query: 61 SPREWTSIEAELHISYRWDPNLKGLMRPANSLLSTVKQDFPDIRQKPPIFGPIFTNINLM 120
SPREWTSIEAELHISYRWDPNLKGLMRPANSLLSTVKQDFPDIRQKPPIFGPIFTNINLM
Sbjct: 61 SPREWTSIEAELHISYRWDPNLKGLMRPANSLLSTVKQDFPDIRQKPPIFGPIFTNINLM 120
Query: 121 GIAPICVMAKRKNGTNVGTLPSTVCNVTFTVDSNQQTYQTYTHNQFRHQPRFPKPPNITF 180
GIAPICVMAKRKNGTNVGTLPSTVCNVTFTVDSNQQTYQTYTHNQFRHQPRFPKPPNITF
Sbjct: 121 GIAPICVMAKRKNGTNVGTLPSTVCNVTFTVDSNQQTYQTYTHNQFRHQPRFPKPPNITF 180
Query: 181 PQGTLLDKSSRFCQGRPSSCSTRNFWFRPADYNQCLQISNLSSTAEWVLLDQTRNSLFWE 240
PQGTLLDKSSRFCQGRPSSCSTRNFWFRPADYNQCLQISNLSSTAEWVLLDQTRNSLFWE
Sbjct: 181 PQGTLLDKSSRFCQGRPSSCSTRNFWFRPADYNQCLQISNLSSTAEWVLLDQTRNSLFWE 240
Query: 241 NKTKGANQSQTPCVQVLAGMTIATSYLGISAVSEFFGTSLTPLFHFHISTCLKTQGAFYI 300
NKTKGANQSQTPCVQVLAGMTIATSYLGISAVSEFFGTSLTPLFHFHISTCLKTQGAFYI
Sbjct: 241 NKTKGANQSQTPCVQVLAGMTIATSYLGISAVSEFFGTSLTPLFHFHISTCLKTQGAFYI 300
Query: 301 CGQSIHQCLPSNWTGTCTIGYVTPDIFIAPGNLSLPIPIYGNSPLPRVRRAIHFIPLLAG 360
CGQSIHQCLPSNWTGTCTIGYVTPDIFIAPGNLSLPIPIYGNSPLPRVRRAIHFIPLLAG
Sbjct: 301 CGQSIHQCLPSNWTGTCTIGYVTPDIFIAPGNLSLPIPIYGNSPLPRVRRAIHFIPLLAG 360
Query: 361 LGILAGTGTGIAGITKASLTYSQLSKEIANNIDTMAKALTTMQEQIDSLAAVVLQNRRGL 420
LGILAGTGTGIAGITKASLTYSQLSKEIANNIDTMAKALTTMQEQIDSLAAVVLQNRRGL
Sbjct: 361 LGILAGTGTGIAGITKASLTYSQLSKEIANNIDTMAKALTTMQEQIDSLAAVVLQNRRGL 420
Query: 421 DMLTAAQGGICLALDEKCCFWVNQSGKVQDNIRQLLNQASSLRERATQGWLNWEGTWKWF 480
DMLTAAQGGICLALDEKCCFWVNQSGKVQDNIRQLLNQASSLRERATQGWLNWEGTWKWF
Sbjct: 421 DMLTAAQGGICLALDEKCCFWVNQSGKVQDNIRQLLNQASSLRERATQGWLNWEGTWKWF 480
Query: 481 SWVLPLTGPLVSLLLLLLFGPCLLNLITQFVSSRLQAIKLQTNLSAGRHPRNIQESPF 538
SWVLPLTGPLVSLLLLLLFGPCLLNLITQFVSSRLQAIKLQTNLSAGRHPRNIQESPF
Sbjct: 481 SWVLPLTGPLVSLLLLLLFGPCLLNLITQFVSSRLQAIKLQTNLSAGRHPRNIQESPF 538
>gi|195963433 syncytin precursor [Homo sapiens]
Length = 538
Score = 187 bits (476), Expect = 2e-47
Identities = 99/242 (40%), Positives = 151/242 (62%), Gaps = 29/242 (11%)
Query: 291 CLKTQGAFYICGQSIHQCLPSNWTGTCTIGYVTPDIFIAPGNLSLPIPIYGNSPL----- 345
CL + G F++CG S ++CL + C + ++ P P+ IY L
Sbjct: 263 CLPS-GIFFVCGTSAYRCLNGSSESMCFLSFLVP-----------PMTIYTEQDLYSYVI 310
Query: 346 --PRVRRAIHFIPLLAGLGILAGTGTGIAGITKASLTYSQLSKEIANNIDTMAKALTTMQ 403
PR +R + +P + G G+L GTGI GIT ++ Y +LS+E+ +++ +A +L T+Q
Sbjct: 311 SKPRNKR-VPILPFVIGAGVLGALGTGIGGITTSTQFYYKLSQELNGDMERVADSLVTLQ 369
Query: 404 EQIDSLAAVVLQNRRGLDMLTAAQGGICLALDEKCCFWVNQSGKVQDNIRQLLN----QA 459
+Q++SLAAVVLQNRR LD+LTA +GG CL L E+CC++VNQSG V + ++++ + +A
Sbjct: 370 DQLNSLAAVVLQNRRALDLLTAERGGTCLFLGEECCYYVNQSGIVTEKVKEIRDRIQRRA 429
Query: 460 SSLRERATQGWLNWEGTWKWFSWVLPLTGPLVSLLLLLLFGPCLLNLITQFVSSRLQAIK 519
LR G L+ +W W+LP GPL +++LLLLFGPC+ NL+ FVSSR++A+K
Sbjct: 430 EELRNTGPWGLLS-----QWMPWILPFLGPLAAIILLLLFGPCIFNLLVNFVSSRIEAVK 484
Query: 520 LQ 521
LQ
Sbjct: 485 LQ 486
>gi|48949851 syncytin precursor [Homo sapiens]
Length = 538
Score = 187 bits (476), Expect = 2e-47
Identities = 99/242 (40%), Positives = 151/242 (62%), Gaps = 29/242 (11%)
Query: 291 CLKTQGAFYICGQSIHQCLPSNWTGTCTIGYVTPDIFIAPGNLSLPIPIYGNSPL----- 345
CL + G F++CG S ++CL + C + ++ P P+ IY L
Sbjct: 263 CLPS-GIFFVCGTSAYRCLNGSSESMCFLSFLVP-----------PMTIYTEQDLYSYVI 310
Query: 346 --PRVRRAIHFIPLLAGLGILAGTGTGIAGITKASLTYSQLSKEIANNIDTMAKALTTMQ 403
PR +R + +P + G G+L GTGI GIT ++ Y +LS+E+ +++ +A +L T+Q
Sbjct: 311 SKPRNKR-VPILPFVIGAGVLGALGTGIGGITTSTQFYYKLSQELNGDMERVADSLVTLQ 369
Query: 404 EQIDSLAAVVLQNRRGLDMLTAAQGGICLALDEKCCFWVNQSGKVQDNIRQLLN----QA 459
+Q++SLAAVVLQNRR LD+LTA +GG CL L E+CC++VNQSG V + ++++ + +A
Sbjct: 370 DQLNSLAAVVLQNRRALDLLTAERGGTCLFLGEECCYYVNQSGIVTEKVKEIRDRIQRRA 429
Query: 460 SSLRERATQGWLNWEGTWKWFSWVLPLTGPLVSLLLLLLFGPCLLNLITQFVSSRLQAIK 519
LR G L+ +W W+LP GPL +++LLLLFGPC+ NL+ FVSSR++A+K
Sbjct: 430 EELRNTGPWGLLS-----QWMPWILPFLGPLAAIILLLLFGPCIFNLLVNFVSSRIEAVK 484
Query: 520 LQ 521
LQ
Sbjct: 485 LQ 486
>gi|239753837 PREDICTED: similar to Uncharacterized protein LP9056
[Homo sapiens]
Length = 563
Score = 72.8 bits (177), Expect = 8e-13
Identities = 128/588 (21%), Positives = 215/588 (36%), Gaps = 121/588 (20%)
Query: 5 LLVLILTPSLAAYRHPDFPLLEKAQQLLQSTGSPYSTNCWLCTS-SSTETPGTAY-PASP 62
LL L LT L P L + L T +NCWLC + E P + PAS
Sbjct: 9 LLQLTLTAFLTILVQPQHLLAPVFRTLSILTNQ---SNCWLCEHLDNAEQPELVFVPASA 65
Query: 63 REWTSIEAELHISYRWDPNLKGLMRPANSLLSTVKQDFPDIRQKPPIFGPIFTNINLM-G 121
W + + W P + N S+ ++ G F + L+ G
Sbjct: 66 STWWTYSGQWMYERVWYPQAE----VQNHSTSSYRKVTWHWEASMEAQGLSFAQVRLLEG 121
Query: 122 IAPICVMAKRKNGTNVGTLPSTVCNVTFTVDSNQQTYQTYTH--NQFRHQPRFPKPPNIT 179
+CV K +G +G +P CN DS T+ N+ R+
Sbjct: 122 NFSLCVENKNGSGPFLGNIPKQYCNQILWFDSTDGTFMPSIDVTNESRND---------- 171
Query: 180 FPQGTLLDKSSRFCQGRPSSCSTRNFWFRPADY----NQCLQISNLSSTAEWVLLDQTRN 235
D + C G CS WF + + + L +T ++ +D+ +
Sbjct: 172 -------DDDTSVCLGT-RQCS----WFAGCTNRTWNSSAVPLIGLPNTQDYKWVDRN-S 218
Query: 236 SLFW----------ENKTKGANQSQTPCVQVLAGMTIATSYLGISAVS-------EFFGT 278
L W +N+TKG + G+T A + S + T
Sbjct: 219 GLTWSGNDTCLYSCQNQTKGLLYQLFRNLFCSYGLTEAHGKWRCADASITNDKGHDGHRT 278
Query: 279 SLTPLFHFHISTCLKTQGAFYICGQSIHQCLPSNWTGTCTIGYVTPDI------------ 326
L +++ + G F++CG +++ P W+G C +GY+ P +
Sbjct: 279 PTWWLTGSNLTLSVNNSGLFFLCGNGVYKGFPPKWSGRCGLGYLVPSLTRYLTLNASQIT 338
Query: 327 ----FI--------APGNLSLPIPIYGNSPLPRVRRAIHFIPLLAGLGILAGTGTGIAGI 374
FI G+ P P+Y N RA+ P L G +
Sbjct: 339 NLRSFIHKVTPHRCTQGDTDNP-PLYCNPKDNSTIRAL--FPSL-----------GTYDL 384
Query: 375 TKASLTYSQLSKEIANNIDTMAKALTTMQEQIDSLAAVVLQNRRGLDMLTAAQGGICLAL 434
KA L +SK + + L Q ++ SLA+ ++ LD+ T + C +
Sbjct: 385 EKAILN---ISKAMEQEFSATKQTLEAHQSKVSSLASASRKDHV-LDIPTTQRQTACGTV 440
Query: 435 DEKCCFWVNQSGKVQDNIRQLLNQASSLRERATQGWLNWEGTW----KWF-SWVLPLTGP 489
++CC ++N S +++ NI++L + +L+ L+W+G + WF SW
Sbjct: 441 GKQCCLYINYSEEIKSNIQRLHEASENLKNVPL---LDWQGIFAKVGDWFRSWGY----- 492
Query: 490 LVSLLLLLLFGPCLLNLITQFVSSRLQAIKLQTNLSAGRHPRNIQESP 537
+LL++LF CL + +V + ++ S P N+ SP
Sbjct: 493 ---VLLIVLF--CLFIFVLIYV-----RVFRKSRRSLNSQPLNLALSP 530
>gi|239748400 PREDICTED: hypothetical protein XP_002346661 [Homo
sapiens]
Length = 563
Score = 72.8 bits (177), Expect = 8e-13
Identities = 128/588 (21%), Positives = 215/588 (36%), Gaps = 121/588 (20%)
Query: 5 LLVLILTPSLAAYRHPDFPLLEKAQQLLQSTGSPYSTNCWLCTS-SSTETPGTAY-PASP 62
LL L LT L P L + L T +NCWLC + E P + PAS
Sbjct: 9 LLQLTLTAFLTILVQPQHLLAPVFRTLSILTNQ---SNCWLCEHLDNAEQPELVFVPASA 65
Query: 63 REWTSIEAELHISYRWDPNLKGLMRPANSLLSTVKQDFPDIRQKPPIFGPIFTNINLM-G 121
W + + W P + N S+ ++ G F + L+ G
Sbjct: 66 STWWTYSGQWMYERVWYPQAE----VQNHSTSSYRKVTWHWEASMEAQGLSFAQVRLLEG 121
Query: 122 IAPICVMAKRKNGTNVGTLPSTVCNVTFTVDSNQQTYQTYTH--NQFRHQPRFPKPPNIT 179
+CV K +G +G +P CN DS T+ N+ R+
Sbjct: 122 NFSLCVENKNGSGPFLGNIPKQYCNQILWFDSTDGTFMPSIDVTNESRND---------- 171
Query: 180 FPQGTLLDKSSRFCQGRPSSCSTRNFWFRPADY----NQCLQISNLSSTAEWVLLDQTRN 235
D + C G CS WF + + + L +T ++ +D+ +
Sbjct: 172 -------DDDTSVCLGT-RQCS----WFAGCTNRTWNSSAVPLIGLPNTQDYKWVDRN-S 218
Query: 236 SLFW----------ENKTKGANQSQTPCVQVLAGMTIATSYLGISAVS-------EFFGT 278
L W +N+TKG + G+T A + S + T
Sbjct: 219 GLTWSGNDTCLYSCQNQTKGLLYQLFRNLFCSYGLTEAHGKWRCADASITNDKGHDGHRT 278
Query: 279 SLTPLFHFHISTCLKTQGAFYICGQSIHQCLPSNWTGTCTIGYVTPDI------------ 326
L +++ + G F++CG +++ P W+G C +GY+ P +
Sbjct: 279 PTWWLTGSNLTLSVNNSGLFFLCGNGVYKGFPPKWSGRCGLGYLVPSLTRYLTLNASQIT 338
Query: 327 ----FI--------APGNLSLPIPIYGNSPLPRVRRAIHFIPLLAGLGILAGTGTGIAGI 374
FI G+ P P+Y N RA+ P L G +
Sbjct: 339 NLRSFIHKVTPHRCTQGDTDNP-PLYCNPKDNSTIRAL--FPSL-----------GTYDL 384
Query: 375 TKASLTYSQLSKEIANNIDTMAKALTTMQEQIDSLAAVVLQNRRGLDMLTAAQGGICLAL 434
KA L +SK + + L Q ++ SLA+ ++ LD+ T + C +
Sbjct: 385 EKAILN---ISKAMEQEFSATKQTLEAHQSKVSSLASASRKDHV-LDIPTTQRQTACGTV 440
Query: 435 DEKCCFWVNQSGKVQDNIRQLLNQASSLRERATQGWLNWEGTW----KWF-SWVLPLTGP 489
++CC ++N S +++ NI++L + +L+ L+W+G + WF SW
Sbjct: 441 GKQCCLYINYSEEIKSNIQRLHEASENLKNVPL---LDWQGIFAKVGDWFRSWGY----- 492
Query: 490 LVSLLLLLLFGPCLLNLITQFVSSRLQAIKLQTNLSAGRHPRNIQESP 537
+LL++LF CL + +V + ++ S P N+ SP
Sbjct: 493 ---VLLIVLF--CLFIFVLIYV-----RVFRKSRRSLNSQPLNLALSP 530
>gi|239742330 PREDICTED: hypothetical protein XP_002342492 [Homo
sapiens]
Length = 563
Score = 72.8 bits (177), Expect = 8e-13
Identities = 128/588 (21%), Positives = 215/588 (36%), Gaps = 121/588 (20%)
Query: 5 LLVLILTPSLAAYRHPDFPLLEKAQQLLQSTGSPYSTNCWLCTS-SSTETPGTAY-PASP 62
LL L LT L P L + L T +NCWLC + E P + PAS
Sbjct: 9 LLQLTLTAFLTILVQPQHLLAPVFRTLSILTNQ---SNCWLCEHLDNAEQPELVFVPASA 65
Query: 63 REWTSIEAELHISYRWDPNLKGLMRPANSLLSTVKQDFPDIRQKPPIFGPIFTNINLM-G 121
W + + W P + N S+ ++ G F + L+ G
Sbjct: 66 STWWTYSGQWMYERVWYPQAE----VQNHSTSSYRKVTWHWEASMEAQGLSFAQVRLLEG 121
Query: 122 IAPICVMAKRKNGTNVGTLPSTVCNVTFTVDSNQQTYQTYTH--NQFRHQPRFPKPPNIT 179
+CV K +G +G +P CN DS T+ N+ R+
Sbjct: 122 NFSLCVENKNGSGPFLGNIPKQYCNQILWFDSTDGTFMPSIDVTNESRND---------- 171
Query: 180 FPQGTLLDKSSRFCQGRPSSCSTRNFWFRPADY----NQCLQISNLSSTAEWVLLDQTRN 235
D + C G CS WF + + + L +T ++ +D+ +
Sbjct: 172 -------DDDTSVCLGT-RQCS----WFAGCTNRTWNSSAVPLIGLPNTQDYKWVDRN-S 218
Query: 236 SLFW----------ENKTKGANQSQTPCVQVLAGMTIATSYLGISAVS-------EFFGT 278
L W +N+TKG + G+T A + S + T
Sbjct: 219 GLTWSGNDTCLYSCQNQTKGLLYQLFRNLFCSYGLTEAHGKWRCADASITNDKGHDGHRT 278
Query: 279 SLTPLFHFHISTCLKTQGAFYICGQSIHQCLPSNWTGTCTIGYVTPDI------------ 326
L +++ + G F++CG +++ P W+G C +GY+ P +
Sbjct: 279 PTWWLTGSNLTLSVNNSGLFFLCGNGVYKGFPPKWSGRCGLGYLVPSLTRYLTLNASQIT 338
Query: 327 ----FI--------APGNLSLPIPIYGNSPLPRVRRAIHFIPLLAGLGILAGTGTGIAGI 374
FI G+ P P+Y N RA+ P L G +
Sbjct: 339 NLRSFIHKVTPHRCTQGDTDNP-PLYCNPKDNSTIRAL--FPSL-----------GTYDL 384
Query: 375 TKASLTYSQLSKEIANNIDTMAKALTTMQEQIDSLAAVVLQNRRGLDMLTAAQGGICLAL 434
KA L +SK + + L Q ++ SLA+ ++ LD+ T + C +
Sbjct: 385 EKAILN---ISKAMEQEFSATKQTLEAHQSKVSSLASASRKDHV-LDIPTTQRQTACGTV 440
Query: 435 DEKCCFWVNQSGKVQDNIRQLLNQASSLRERATQGWLNWEGTW----KWF-SWVLPLTGP 489
++CC ++N S +++ NI++L + +L+ L+W+G + WF SW
Sbjct: 441 GKQCCLYINYSEEIKSNIQRLHEASENLKNVPL---LDWQGIFAKVGDWFRSWGY----- 492
Query: 490 LVSLLLLLLFGPCLLNLITQFVSSRLQAIKLQTNLSAGRHPRNIQESP 537
+LL++LF CL + +V + ++ S P N+ SP
Sbjct: 493 ---VLLIVLF--CLFIFVLIYV-----RVFRKSRRSLNSQPLNLALSP 530
>gi|145651814 endogenous retroviral sequence 3 [Homo sapiens]
Length = 604
Score = 58.9 bits (141), Expect = 1e-08
Identities = 49/194 (25%), Positives = 81/194 (41%), Gaps = 26/194 (13%)
Query: 296 GAFYICGQSIHQCLPSNWTGTCTIGYVTPDIFIAP--GNLSLPIPIYG------------ 341
G ++ICG ++ LP+ W+G C +G + P F+ P +L PIY
Sbjct: 416 GLYWICGPQAYRQLPAKWSGACVLGTIRPSFFLMPLKQGEALGYPIYDETKRKSKRGITI 475
Query: 342 ----NSPLPRVRRAIHFIPLLAGLGILAGTGTGIAGITKASLTYSQLSKEIANNIDTMAK 397
++ P R ++ P + G T + + + + Q EI N A
Sbjct: 476 GDWKDNEWPPERIIQYYGPATWAEDGMWGYRTPVYMLNR--IIRLQAVLEIITN--ETAG 531
Query: 398 ALTTMQEQIDSLAAVVLQNRRGLDMLTAAQGGICLALD-EKCCFWVNQSGKVQDNIRQLL 456
AL + +Q + V+ QNR LD L A + G+C + CC ++ GKV I+++
Sbjct: 532 ALNLLAQQATKMRNVIYQNRLALDYLLAQEEGVCGKFNLTNCCLELDDEGKV---IKEIT 588
Query: 457 NQASSLRERATQGW 470
+ L Q W
Sbjct: 589 AKIQKLAHIPVQTW 602
>gi|40805854 isthmin 2 homolog isoform 3 [Homo sapiens]
Length = 292
Score = 32.7 bits (73), Expect = 0.86
Identities = 22/62 (35%), Positives = 26/62 (41%), Gaps = 10/62 (16%)
Query: 38 PYSTNCWLCTSSSTETPGTAYPASPREWTSIEAELHISYRWDPNLKGLMRPANSLLSTVK 97
P+ CW T + TPG A P E T + EL L GL AN+ LST
Sbjct: 75 PHQHGCWTVTEPAAMTPGNATPPRTPEVTPLRLELQ-------KLPGL---ANTTLSTPN 124
Query: 98 QD 99
D
Sbjct: 125 PD 126
>gi|40805858 isthmin 2 homolog isoform 1 [Homo sapiens]
Length = 571
Score = 32.7 bits (73), Expect = 0.86
Identities = 22/62 (35%), Positives = 26/62 (41%), Gaps = 10/62 (16%)
Query: 38 PYSTNCWLCTSSSTETPGTAYPASPREWTSIEAELHISYRWDPNLKGLMRPANSLLSTVK 97
P+ CW T + TPG A P E T + EL L GL AN+ LST
Sbjct: 75 PHQHGCWTVTEPAAMTPGNATPPRTPEVTPLRLELQ-------KLPGL---ANTTLSTPN 124
Query: 98 QD 99
D
Sbjct: 125 PD 126
>gi|19115954 dynein, axonemal, heavy chain 5 [Homo sapiens]
Length = 4624
Score = 30.8 bits (68), Expect = 3.3
Identities = 47/198 (23%), Positives = 80/198 (40%), Gaps = 18/198 (9%)
Query: 314 TGTCTIGYVT-PDIFIAPGNLSLPIPIY-----GNSPLPRVRRAIH--FIPLLAGLGILA 365
TG C T P I P N+ + L VRR + FIP L
Sbjct: 124 TGVCVFFIRTDPSKAITPDNIHQEVSFNMLDAADGGLLNSVRRLLSDIFIPALRATS--H 181
Query: 366 GTGTGIAGITKASLTYSQLSKEIANNIDTMAKALTTMQEQIDSLAAVVLQNR---RGLDM 422
G G + G+ A+ + + ++ ++ A +++E+++ +L+ + D
Sbjct: 182 GWGE-LEGLQDAANIRQEFLSSLEGFVNVLSGAQESLKEKVNLRKCDILELKTLKEPTDY 240
Query: 423 LTAAQGGICLALDEKCC-FWVNQSGKVQDNIRQLLNQASSLRERATQGWLNWEGTWKWFS 481
LT A L E C W+ Q+ +V QLL +A + RA +W+ F+
Sbjct: 241 LTLANNPETLGKIEDCMKVWIKQTEQVLAENNQLLKEADDVGPRAELE--HWKKRLSKFN 298
Query: 482 WVL-PLTGPLVSLLLLLL 498
++L L P V +L +L
Sbjct: 299 YLLEQLKSPDVKAVLAVL 316
>gi|50843948 Rho GTPase activating protein 10 [Homo sapiens]
Length = 786
Score = 29.6 bits (65), Expect = 7.3
Identities = 17/53 (32%), Positives = 24/53 (45%)
Query: 168 HQPRFPKPPNITFPQGTLLDKSSRFCQGRPSSCSTRNFWFRPADYNQCLQISN 220
H+ F PP+ TFP+ T L S R S + A YN CL++ +
Sbjct: 570 HEKIFRTPPDTTFPEPTCLSASPPNAPPRQSKRQGQRTKRPVAVYNLCLELED 622
>gi|168823443 RAD54-like 2 [Homo sapiens]
Length = 1467
Score = 29.6 bits (65), Expect = 7.3
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Query: 58 YPASPREWTSIEAELHISYR-WDPNLKGLMRPANSLLSTVKQDFPDIRQKPPIFGPI 113
YPAS + TSI A S R W P LKG +P S+ P + + P+ G +
Sbjct: 991 YPASDQSLTSIPA---FSQRNWQPTLKGDEKPVASVRPVQSTPIPMMPRHVPLGGSV 1044
>gi|6912396 glyoxylate reductase/hydroxypyruvate reductase [Homo
sapiens]
Length = 328
Score = 29.3 bits (64), Expect = 9.5
Identities = 39/166 (23%), Positives = 66/166 (39%), Gaps = 34/166 (20%)
Query: 379 LTYSQLSKEIANNIDTMAKALTTMQEQIDSLAAVVLQNRRGL------DMLTAAQGGICL 432
L + K I + K ++TM ID LA ++ +RG+ D+LT + +
Sbjct: 58 LLSDHVDKRILDAAGANLKVISTMSVGIDHLALDEIK-KRGIRVGYTPDVLTDTTAELAV 116
Query: 433 ALDEKCCFWVNQSGKVQDNIRQLLNQASSLRERATQGWLNWEGTWKWFSWVLPLTGPLVS 492
+L C R+L ++ E GW +W+ W L G ++
Sbjct: 117 SLLLTTC-------------RRL---PEAIEEVKNGGWTSWKPLW--------LCGYGLT 152
Query: 493 LLLLLLFGPCLLNLITQFVSSRLQAIKLQTNLSAGRHPRNIQESPF 538
+ + G L I Q ++ RL+ +Q L GR PR + + F
Sbjct: 153 QSTVGIIG---LGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEF 195
>gi|122937269 Wilms tumor 1 interacting protein [Homo sapiens]
Length = 430
Score = 29.3 bits (64), Expect = 9.5
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 28 AQQLLQSTGSPYSTNCWLCTSSSTETPGTAY 58
AQQ Q+ GS Y T+C+ C S G A+
Sbjct: 235 AQQACQAMGSLYHTDCFTCDSCGRRLRGKAF 265
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.135 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,309,435
Number of Sequences: 37866
Number of extensions: 985388
Number of successful extensions: 2405
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2379
Number of HSP's gapped (non-prelim): 26
length of query: 538
length of database: 18,247,518
effective HSP length: 107
effective length of query: 431
effective length of database: 14,195,856
effective search space: 6118413936
effective search space used: 6118413936
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.