Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: CACNA2D4 Sequence: fasta or formatted (1137aa) NCBI GI: 132566536
Description:

voltage-gated calcium channel alpha(2)delta-4 subunit

Referenced in:

Calcium and TRP Cation Channels

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.1         81           4
 C cysteine            2.0         23           1
 D aspartate           6.1         69           1
 E glutamate           6.7         76           2
 F phenylalanine       4.5         51           2
 G glycine             5.3         60           2
 H histidine           2.3         26           3
 I isoleucine          4.1         47           2
 K lysine              4.7         54           2
 L leucine            11.2        127           4
 M methionine          2.6         29           1
 N asparagine          4.3         49           2
 P proline             5.2         59           2
 Q glutamine           3.7         42           2
 R arginine            4.6         52           3
 S serine              7.2         82           4
 T threonine           5.5         62           2
 V valine              7.9         90           2
 W tryptophan          1.9         22           1
 Y tyrosine            3.2         36           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   voltage-gated calcium channel alpha(2)delta-4 subun... 
CACNA2D3              0.582   calcium channel, voltage-dependent, alpha 2/delta 3 ...
CACNA2D2              0.181   calcium channel, voltage-dependent, alpha 2/delta su...
CACNA2D2              0.180   calcium channel, voltage-dependent, alpha 2/delta su...
CACNA2D1              0.162   calcium channel, voltage-dependent, alpha 2/delta su...
CACHD1                0.025   cache domain containing 1 
ITIH2                 0.015   inter-alpha globulin inhibitor H2 polypeptide 
ITIH3                 0.013   inter-alpha (globulin) inhibitor H3 preproprotein [...
ITIH4                 0.012   inter-alpha (globulin) inhibitor H4 
ITIH1                 0.011   inter-alpha (globulin) inhibitor H1 
ITIH5L                0.009   inter-alpha (globulin) inhibitor H5-like 
ITIH5                 0.008   inter-alpha trypsin inhibitor heavy chain precursor ...
ITIH5                 0.008   inter-alpha trypsin inhibitor heavy chain precursor...
ITIH5                 0.008   inter-alpha trypsin inhibitor heavy chain precursor...
ZNF175                0.006   zinc finger protein 175 
C14orf37              0.004   hypothetical protein LOC145407 
AKD1                  0.003   adenylate kinase domain containing 1 isoform 1 [Hom...
MATN3                 0.003   matrilin 3 precursor 
SLC12A2               0.003   solute carrier family 12 (sodium/potassium/chloride t...
MRFAP1L1              0.003   Morf4 family associated protein 1-like 1 
PARP4                 0.003   poly (ADP-ribose) polymerase family, member 4 [Homo...
PAWR                  0.003   PRKC, apoptosis, WT1, regulator 
ATP11B                0.003   ATPase, class VI, type 11B 
SGSH                  0.002   N-sulfoglucosamine sulfohydrolase precursor 
C2CD3                 0.002   C2 calcium-dependent domain containing 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press