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Search of human proteins with 4507723
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4507723 tocopherol (alpha) transfer protein [Homo sapiens]
(278 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4507723 tocopherol (alpha) transfer protein [Homo sapiens] 562 e-160
gi|85861243 tocopherol (alpha) transfer protein-like [Homo sapiens] 162 2e-40
gi|85861250 tocopherol (alpha) transfer protein-like [Homo sapiens] 162 2e-40
gi|71896667 retinaldehyde binding protein 1-like 2 [Homo sapiens] 142 2e-34
gi|27734849 retinaldehyde binding protein 1-like 1 [Homo sapiens] 141 5e-34
gi|4506541 retinaldehyde binding protein 1 [Homo sapiens] 133 2e-31
gi|238624167 SEC14p-like protein TAP3 isoform b [Homo sapiens] 95 6e-20
gi|28376621 SEC14p-like protein TAP3 isoform a [Homo sapiens] 95 6e-20
gi|209364516 SEC14-like 2 isoform 2 [Homo sapiens] 92 7e-19
gi|7110715 SEC14-like 2 isoform 1 [Homo sapiens] 92 7e-19
gi|27923592 SEC14-like 3 [Homo sapiens] 88 9e-18
gi|4506301 protein tyrosine phosphatase, non-receptor type 9 [Ho... 86 3e-17
gi|169216042 PREDICTED: similar to SEC14p-like protein TAP3 [Hom... 84 1e-16
gi|169215836 PREDICTED: similar to SEC14p-like protein TAP3 [Hom... 83 3e-16
gi|169215635 PREDICTED: similar to SEC14p-like protein TAP3 [Hom... 83 3e-16
gi|150010661 SEC14-like 5 [Homo sapiens] 64 1e-10
gi|221316687 SEC14 (S. cerevisiae)-like 1 isoform c [Homo sapiens] 57 1e-08
gi|221316680 SEC14 (S. cerevisiae)-like 1 isoform a [Homo sapiens] 57 1e-08
gi|221316676 SEC14 (S. cerevisiae)-like 1 isoform a [Homo sapiens] 57 1e-08
gi|221316684 SEC14 (S. cerevisiae)-like 1 isoform b [Homo sapiens] 57 1e-08
gi|221316682 SEC14 (S. cerevisiae)-like 1 isoform a [Homo sapiens] 57 1e-08
gi|55770862 thyroglobulin [Homo sapiens] 31 1.4
gi|148539848 desmocollin 3 isoform Dsc3b preproprotein [Homo sap... 29 4.0
gi|148539846 desmocollin 3 isoform Dsc3a preproprotein [Homo sap... 29 4.0
gi|146219843 Snf2-related CBP activator protein [Homo sapiens] 29 4.0
gi|148529025 pleckstrin homology domain containing, family G (wi... 29 5.2
gi|158138530 cytochrome P450, family 4, subfamily F, polypeptide... 28 6.8
gi|34452688 regulator of G-protein signalling 11 isoform 1 [Homo... 28 6.8
gi|38201692 RAS p21 protein activator 3 [Homo sapiens] 28 6.8
gi|4506507 regulator of G-protein signalling 11 isoform 2 [Homo ... 28 6.8
>gi|4507723 tocopherol (alpha) transfer protein [Homo sapiens]
Length = 278
Score = 562 bits (1448), Expect = e-160
Identities = 278/278 (100%), Positives = 278/278 (100%)
Query: 1 MAEARSQPSAGPQLNALPDHSPLLQPGLAALRRRAREAGVPLAPLPLTDSFLLRFLRARD 60
MAEARSQPSAGPQLNALPDHSPLLQPGLAALRRRAREAGVPLAPLPLTDSFLLRFLRARD
Sbjct: 1 MAEARSQPSAGPQLNALPDHSPLLQPGLAALRRRAREAGVPLAPLPLTDSFLLRFLRARD 60
Query: 61 FDLDLAWRLLKNYYKWRAECPEISADLHPRSIIGLLKAGYHGVLRSRDPTGSKVLIYRIA 120
FDLDLAWRLLKNYYKWRAECPEISADLHPRSIIGLLKAGYHGVLRSRDPTGSKVLIYRIA
Sbjct: 61 FDLDLAWRLLKNYYKWRAECPEISADLHPRSIIGLLKAGYHGVLRSRDPTGSKVLIYRIA 120
Query: 121 HWDPKVFTAYDVFRVSLITSELIVQEVETQRNGIKAIFDLEGWQFSHAFQITPSVAKKIA 180
HWDPKVFTAYDVFRVSLITSELIVQEVETQRNGIKAIFDLEGWQFSHAFQITPSVAKKIA
Sbjct: 121 HWDPKVFTAYDVFRVSLITSELIVQEVETQRNGIKAIFDLEGWQFSHAFQITPSVAKKIA 180
Query: 181 AVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMHGNNYKQSLLQHFPDI 240
AVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMHGNNYKQSLLQHFPDI
Sbjct: 181 AVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMHGNNYKQSLLQHFPDI 240
Query: 241 LPLEYGGEEFSMEDICQEWTNFIMKSEDYLSSISESIQ 278
LPLEYGGEEFSMEDICQEWTNFIMKSEDYLSSISESIQ
Sbjct: 241 LPLEYGGEEFSMEDICQEWTNFIMKSEDYLSSISESIQ 278
>gi|85861243 tocopherol (alpha) transfer protein-like [Homo sapiens]
Length = 342
Score = 162 bits (411), Expect = 2e-40
Identities = 94/240 (39%), Positives = 134/240 (55%), Gaps = 5/240 (2%)
Query: 30 ALRRRAREAGVPLAPLPLTDSFLLRFLRARDFDLDLAWRLLKNYYKWRAECPEISADLHP 89
ALR R+ P L D+FLLRFLRAR FD D A +LL NY+ R PE+ +L P
Sbjct: 60 ALRDMVRKE-YPNLSTSLDDAFLLRFLRARKFDYDRALQLLVNYHSCRRSWPEVFNNLKP 118
Query: 90 RSIIGLLKAGYHGVLRSRDPTGSKVLIYRIAHWDPKVFTAYDVFRVSLITSELIVQEVET 149
++ +L +G+ VL DP G V+ R W P + + R +T E ++Q ET
Sbjct: 119 SALKDVLASGFLTVLPHTDPRGCHVVCIRPDRWIPSNYPITENIRAIYLTLEKLIQSEET 178
Query: 150 QRNGIKAIFDLEGWQFSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSM 209
Q NGI + D +G S A P +AKK+ +L D FP++++ +H++NEP IF +F++
Sbjct: 179 QVNGIVILADYKGVSLSKASHFGPFIAKKVIGILQDGFPIRIKAVHVVNEPRIFKGIFAI 238
Query: 210 IKPFLTEKIKERIHMHGNNYKQSLLQHFP-DILPLEYGGEEFSMEDICQEWTNFIMKSED 268
IKPFL EKI R +HG++ SL + P ILP EYGG ++ W ++ SED
Sbjct: 239 IKPFLKEKIANRFFLHGSDL-NSLHTNLPRSILPKEYGGTAGELD--TATWNAVLLASED 295
>gi|85861250 tocopherol (alpha) transfer protein-like [Homo sapiens]
Length = 342
Score = 162 bits (411), Expect = 2e-40
Identities = 94/240 (39%), Positives = 134/240 (55%), Gaps = 5/240 (2%)
Query: 30 ALRRRAREAGVPLAPLPLTDSFLLRFLRARDFDLDLAWRLLKNYYKWRAECPEISADLHP 89
ALR R+ P L D+FLLRFLRAR FD D A +LL NY+ R PE+ +L P
Sbjct: 60 ALRDMVRKE-YPNLSTSLDDAFLLRFLRARKFDYDRALQLLVNYHSCRRSWPEVFNNLKP 118
Query: 90 RSIIGLLKAGYHGVLRSRDPTGSKVLIYRIAHWDPKVFTAYDVFRVSLITSELIVQEVET 149
++ +L +G+ VL DP G V+ R W P + + R +T E ++Q ET
Sbjct: 119 SALKDVLASGFLTVLPHTDPRGCHVVCIRPDRWIPSNYPITENIRAIYLTLEKLIQSEET 178
Query: 150 QRNGIKAIFDLEGWQFSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSM 209
Q NGI + D +G S A P +AKK+ +L D FP++++ +H++NEP IF +F++
Sbjct: 179 QVNGIVILADYKGVSLSKASHFGPFIAKKVIGILQDGFPIRIKAVHVVNEPRIFKGIFAI 238
Query: 210 IKPFLTEKIKERIHMHGNNYKQSLLQHFP-DILPLEYGGEEFSMEDICQEWTNFIMKSED 268
IKPFL EKI R +HG++ SL + P ILP EYGG ++ W ++ SED
Sbjct: 239 IKPFLKEKIANRFFLHGSDL-NSLHTNLPRSILPKEYGGTAGELD--TATWNAVLLASED 295
>gi|71896667 retinaldehyde binding protein 1-like 2 [Homo sapiens]
Length = 327
Score = 142 bits (359), Expect = 2e-34
Identities = 77/201 (38%), Positives = 117/201 (58%), Gaps = 2/201 (0%)
Query: 49 DSFLLRFLRARDFDLDLAWRLLKNYYKWRAECPEI--SADLHPRSIIGLLKAGYHGVLRS 106
D+F+LRFLRAR F A+RLL Y+++R + ++ S I LK G+ G L +
Sbjct: 51 DAFILRFLRARKFHHFEAFRLLAQYFEYRQQNLDMFKSFKATDPGIKQALKDGFPGGLAN 110
Query: 107 RDPTGSKVLIYRIAHWDPKVFTAYDVFRVSLITSELIVQEVETQRNGIKAIFDLEGWQFS 166
D G K+L+ A+WD +T D+ R L++ E ++++ E Q NG I D + F
Sbjct: 111 LDHYGRKILVLFAANWDQSRYTLVDILRAILLSLEAMIEDPELQVNGFVLIIDWSNFTFK 170
Query: 167 HAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMHG 226
A ++TPS+ + L DSFP + GIH +N+P HA++++I+PFL EK ++RI +HG
Sbjct: 171 QASKLTPSMLRLAIEGLQDSFPARFGGIHFVNQPWYIHALYTVIRPFLKEKTRKRIFLHG 230
Query: 227 NNYKQSLLQHFPDILPLEYGG 247
NN P+ILP E+GG
Sbjct: 231 NNLNSLHQLIHPEILPSEFGG 251
>gi|27734849 retinaldehyde binding protein 1-like 1 [Homo sapiens]
Length = 354
Score = 141 bits (356), Expect = 5e-34
Identities = 76/205 (37%), Positives = 118/205 (57%), Gaps = 10/205 (4%)
Query: 49 DSFLLRFLRARDFDLDLAWRLLKNYYKWRAECPEISADLHPR------SIIGLLKAGYHG 102
D+F+LRFLRAR F A+RLL Y+++R +++ D+ I L G+ G
Sbjct: 73 DAFILRFLRARKFHQADAFRLLAQYFQYR----QLNLDMFKNFKADDPGIKRALIDGFPG 128
Query: 103 VLRSRDPTGSKVLIYRIAHWDPKVFTAYDVFRVSLITSELIVQEVETQRNGIKAIFDLEG 162
VL +RD G K+L+ A+WD + D+ R L++ E+++++ E Q NG I D
Sbjct: 129 VLENRDHYGRKILLLFAANWDQSRNSFTDILRAILLSLEVLIEDPELQINGFILIIDWSN 188
Query: 163 WQFSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERI 222
+ F A ++TPS+ K L DSFP + G+H +N+P HA++++IKPFL +K ++RI
Sbjct: 189 FSFKQASKLTPSILKLAIEGLQDSFPARFGGVHFVNQPWYIHALYTLIKPFLKDKTRKRI 248
Query: 223 HMHGNNYKQSLLQHFPDILPLEYGG 247
+HGNN P+ LP E+GG
Sbjct: 249 FLHGNNLNSLHQLIHPEFLPSEFGG 273
>gi|4506541 retinaldehyde binding protein 1 [Homo sapiens]
Length = 317
Score = 133 bits (334), Expect = 2e-31
Identities = 66/197 (33%), Positives = 113/197 (57%)
Query: 51 FLLRFLRARDFDLDLAWRLLKNYYKWRAECPEISADLHPRSIIGLLKAGYHGVLRSRDPT 110
F LRF+RAR F++ A+ LL+ Y +R + PE+ L P ++ ++AGY GVL SRD
Sbjct: 95 FFLRFIRARKFNVGRAYELLRGYVNFRLQYPELFDSLSPEAVRCTIEAGYPGVLSSRDKY 154
Query: 111 GSKVLIYRIAHWDPKVFTAYDVFRVSLITSELIVQEVETQRNGIKAIFDLEGWQFSHAFQ 170
G V+++ I +W + T ++ + E +++ ETQ NG I + +G+ A
Sbjct: 155 GRVVMLFNIENWQSQEITFDEILQAYCFILEKLLENEETQINGFCIIENFKGFTMQQAAS 214
Query: 171 ITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMHGNNYK 230
+ S +K+ +L DSFP + + IH I++P F ++++KPFL K+ ER+ +HG++
Sbjct: 215 LRTSDLRKMVDMLQDSFPARFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFVHGDDLS 274
Query: 231 QSLLQHFPDILPLEYGG 247
+ +ILP ++GG
Sbjct: 275 GFYQEIDENILPSDFGG 291
>gi|238624167 SEC14p-like protein TAP3 isoform b [Homo sapiens]
Length = 360
Score = 95.1 bits (235), Expect = 6e-20
Identities = 73/242 (30%), Positives = 124/242 (51%), Gaps = 18/242 (7%)
Query: 19 DHSPLLQPGLAALRRRAREAGVPLAPLPLTDSFLLRFLRARDFDLDLAWRLLKNYYKWRA 78
D SP Q LA R ++ +P+ P D FLLR+LRAR+FDL + +L+ + ++R
Sbjct: 7 DLSPQQQEALARFRENLQDL-LPILP-NADDYFLLRWLRARNFDLQKSEDMLRRHMEFRK 64
Query: 79 ECP-EISADLHPRSIIGLLKAGYHGVLRSRDPTGSKVLIYRIAHWDPKVF----TAYDVF 133
+ + P +I L +G L D G V I DPK + D+
Sbjct: 65 QQDLDNIVTWQPPEVIQLYDSGG---LCGYDYEGCPVYFNIIGSLDPKGLLLSASKQDMI 121
Query: 134 RVSLITSELIVQEVE--TQRNGIKA-----IFDLEGWQFSHAFQITPSVAKKIAAVLTDS 186
R + EL++ E E TQ+ G K +FD+EG H ++ V ++ ++L +
Sbjct: 122 RKRIKVCELLLHECELQTQKLGRKIEMALMVFDMEGLSLKHLWKPAVEVYQQFFSILEAN 181
Query: 187 FPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMHGNNYKQSLLQHF-PDILPLEY 245
+P ++ + +I P +F F+++K F++E+ + +I + G+N+KQ L + PD LP+E+
Sbjct: 182 YPETLKNLIVIRAPKLFPVAFNLVKSFMSEETRRKIVILGDNWKQELTKFISPDQLPVEF 241
Query: 246 GG 247
GG
Sbjct: 242 GG 243
>gi|28376621 SEC14p-like protein TAP3 isoform a [Homo sapiens]
Length = 406
Score = 95.1 bits (235), Expect = 6e-20
Identities = 73/242 (30%), Positives = 124/242 (51%), Gaps = 18/242 (7%)
Query: 19 DHSPLLQPGLAALRRRAREAGVPLAPLPLTDSFLLRFLRARDFDLDLAWRLLKNYYKWRA 78
D SP Q LA R ++ +P+ P D FLLR+LRAR+FDL + +L+ + ++R
Sbjct: 7 DLSPQQQEALARFRENLQDL-LPILP-NADDYFLLRWLRARNFDLQKSEDMLRRHMEFRK 64
Query: 79 ECP-EISADLHPRSIIGLLKAGYHGVLRSRDPTGSKVLIYRIAHWDPKVF----TAYDVF 133
+ + P +I L +G L D G V I DPK + D+
Sbjct: 65 QQDLDNIVTWQPPEVIQLYDSGG---LCGYDYEGCPVYFNIIGSLDPKGLLLSASKQDMI 121
Query: 134 RVSLITSELIVQEVE--TQRNGIKA-----IFDLEGWQFSHAFQITPSVAKKIAAVLTDS 186
R + EL++ E E TQ+ G K +FD+EG H ++ V ++ ++L +
Sbjct: 122 RKRIKVCELLLHECELQTQKLGRKIEMALMVFDMEGLSLKHLWKPAVEVYQQFFSILEAN 181
Query: 187 FPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMHGNNYKQSLLQHF-PDILPLEY 245
+P ++ + +I P +F F+++K F++E+ + +I + G+N+KQ L + PD LP+E+
Sbjct: 182 YPETLKNLIVIRAPKLFPVAFNLVKSFMSEETRRKIVILGDNWKQELTKFISPDQLPVEF 241
Query: 246 GG 247
GG
Sbjct: 242 GG 243
>gi|209364516 SEC14-like 2 isoform 2 [Homo sapiens]
Length = 392
Score = 91.7 bits (226), Expect = 7e-19
Identities = 74/243 (30%), Positives = 122/243 (50%), Gaps = 20/243 (8%)
Query: 19 DHSPLLQPGLAALRRRAREAGVPLAPLPLTDSFLLRFLRARDFDLDLAWRLLKNYYKWRA 78
D SP + LA R ++ +P P P D FLLR+LRAR FDL + +L+ + ++R
Sbjct: 7 DLSPRQKEALAKFRENVQDV-LPALPNP-DDYFLLRWLRARSFDLQKSEAMLRKHVEFRK 64
Query: 79 E--CPEISADLHPRSIIGLLKAGYHGVLRSRDPTGSKVLIYRIAHWDPK--VFTA--YDV 132
+ I + P I L G G D G V I D K +F+A D+
Sbjct: 65 QKDIDNIISWQPPEVIQQYLSGGMCGY----DLDGCPVWYDIIGPLDAKGLLFSASKQDL 120
Query: 133 FRVSLITSELIVQEV--ETQRNGIKA-----IFDLEGWQFSHAFQITPSVAKKIAAVLTD 185
R + EL++QE +T + G K I+D EG H ++ + + +
Sbjct: 121 LRTKMRECELLLQECAHQTTKLGRKVETITIIYDCEGLGLKHLWKPAVEAYGEFLCMFEE 180
Query: 186 SFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMHGNNYKQSLLQHF-PDILPLE 244
++P ++ + ++ P +F +++IKPFL+E +++I + G N+K+ LL+H PD +P+E
Sbjct: 181 NYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGANWKEVLLKHISPDQVPVE 240
Query: 245 YGG 247
YGG
Sbjct: 241 YGG 243
>gi|7110715 SEC14-like 2 isoform 1 [Homo sapiens]
Length = 403
Score = 91.7 bits (226), Expect = 7e-19
Identities = 74/243 (30%), Positives = 122/243 (50%), Gaps = 20/243 (8%)
Query: 19 DHSPLLQPGLAALRRRAREAGVPLAPLPLTDSFLLRFLRARDFDLDLAWRLLKNYYKWRA 78
D SP + LA R ++ +P P P D FLLR+LRAR FDL + +L+ + ++R
Sbjct: 7 DLSPRQKEALAKFRENVQDV-LPALPNP-DDYFLLRWLRARSFDLQKSEAMLRKHVEFRK 64
Query: 79 E--CPEISADLHPRSIIGLLKAGYHGVLRSRDPTGSKVLIYRIAHWDPK--VFTA--YDV 132
+ I + P I L G G D G V I D K +F+A D+
Sbjct: 65 QKDIDNIISWQPPEVIQQYLSGGMCGY----DLDGCPVWYDIIGPLDAKGLLFSASKQDL 120
Query: 133 FRVSLITSELIVQEV--ETQRNGIKA-----IFDLEGWQFSHAFQITPSVAKKIAAVLTD 185
R + EL++QE +T + G K I+D EG H ++ + + +
Sbjct: 121 LRTKMRECELLLQECAHQTTKLGRKVETITIIYDCEGLGLKHLWKPAVEAYGEFLCMFEE 180
Query: 186 SFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMHGNNYKQSLLQHF-PDILPLE 244
++P ++ + ++ P +F +++IKPFL+E +++I + G N+K+ LL+H PD +P+E
Sbjct: 181 NYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGANWKEVLLKHISPDQVPVE 240
Query: 245 YGG 247
YGG
Sbjct: 241 YGG 243
>gi|27923592 SEC14-like 3 [Homo sapiens]
Length = 400
Score = 87.8 bits (216), Expect = 9e-18
Identities = 70/250 (28%), Positives = 125/250 (50%), Gaps = 34/250 (13%)
Query: 19 DHSPLLQPGLAALRRRAREAGVPLAPLPLTDSFLLRFLRARDFDLDLAWRLLKNYYKWRA 78
D SP LA R ++ +P P P D FLLR+LRAR+FDL + LL+ Y ++R
Sbjct: 7 DLSPKQAETLAKFRENVQDV-LPALPNP-DDYFLLRWLRARNFDLQKSEALLRKYMEFRK 64
Query: 79 ----------ECPEISADLHPRSIIGLLKAG---YHGVLRSRDPTGSKVLIYRIAHWDPK 125
+ PE+ P + G + G ++ ++ DP G L++ +
Sbjct: 65 TMDIDHILDWQPPEVIQKYMPGGLCGYDRDGCPVWYDIIGPLDPKG---LLFSV------ 115
Query: 126 VFTAYDVFRVSLITSELIVQE--VETQRNGIKA-----IFDLEGWQFSHAFQITPSVAKK 178
T D+ + + E I+ E ++T+R G K IFD EG H ++ V ++
Sbjct: 116 --TKQDLLKTKMRDCERILHECDLQTERLGKKIETIVMIFDCEGLGLKHFWKPLVEVYQE 173
Query: 179 IAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMHGNNYKQSLLQHF- 237
+L +++P ++ + ++ +F ++++KPFL+E + +I + GNN+K+ LL+
Sbjct: 174 FFGLLEENYPETLKFMLIVKATKLFPVGYNLMKPFLSEDTRRKIIVLGNNWKEGLLKLIS 233
Query: 238 PDILPLEYGG 247
P+ LP ++GG
Sbjct: 234 PEELPAQFGG 243
>gi|4506301 protein tyrosine phosphatase, non-receptor type 9 [Homo
sapiens]
Length = 593
Score = 86.3 bits (212), Expect = 3e-17
Identities = 59/242 (24%), Positives = 115/242 (47%), Gaps = 7/242 (2%)
Query: 7 QPSAGPQLNALPDHSPLLQPGLAALRRRAREAGVPLAPLPLTDSFLLRFLRARDFDLDLA 66
+P+ P+ + P+ +P + + V PL+ + ++FL AR FD+ A
Sbjct: 2 EPATAPRPDMAPELTPEEEQATKQFLEEINKWTVQYNVSPLSWNVAVKFLMARKFDVLRA 61
Query: 67 WRLLKNYYKWRAECPEISADLHPRSIIGLLKAGYHGVLRSRDPTGSKVLIYRIAHWDPKV 126
L +Y + R + + H + + +G +L RDPTG+ + ++ P
Sbjct: 62 IELFHSYRETRRKEGIVKLKPHEEPLRSEILSGKFTILNVRDPTGASIALFTARLHHPHK 121
Query: 127 FTAYDVFRVSLITSELIVQEVETQRNGIKAIFDLEGWQFSHAFQITPSVAKKIAAVLTDS 186
+ V + + V ETQRNG+ I+D+ G +++ F++ + KK+ +L +
Sbjct: 122 SVQHVVLQALFYLLDRAVDSFETQRNGLVFIYDMCGSNYAN-FEL--DLGKKVLNLLKGA 178
Query: 187 FPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMHGNNYKQSLLQHFP-DILPLEY 245
FP +++ + ++ P+ F +S+I L +K++ERI + + + QH P + LP
Sbjct: 179 FPARLKKVLIVGAPIWFRVPYSIISLLLKDKVRERIQILKTS---EVTQHLPRECLPENL 235
Query: 246 GG 247
GG
Sbjct: 236 GG 237
>gi|169216042 PREDICTED: similar to SEC14p-like protein TAP3 [Homo
sapiens]
Length = 397
Score = 84.3 bits (207), Expect = 1e-16
Identities = 68/244 (27%), Positives = 126/244 (51%), Gaps = 22/244 (9%)
Query: 19 DHSPLLQPGLAALRRRAREAGVPLAPLPLTDS-FLLRFLRARDFDLDLAWRLLKNYYKWR 77
D SP + LA R ++ L+ LP D FLLR+LRAR FDL + +L+ + ++R
Sbjct: 7 DLSPSQEKSLAQFRENIQDV---LSALPNPDDYFLLRWLRARSFDLQKSEDMLRKHMEFR 63
Query: 78 AECPEISADL--HPRSIIGLLKAGYHGVLRSRDPTGSKVLIYRIAHWDPKVF----TAYD 131
+ +++ L P ++ L A +G+ D GS V + + DPK + +
Sbjct: 64 KQ-QDLANILAWQPPEVVRLYNA--NGIC-GHDGEGSPVWYHIVGSLDPKGLLLSASKQE 119
Query: 132 VFRVSLITSELIVQEVETQRNG-------IKAIFDLEGWQFSHAFQITPSVAKKIAAVLT 184
+ R S + EL+++E E Q I AIF LEG ++ + ++ + L
Sbjct: 120 LLRDSFRSCELLLRECELQSQKLGKKVEKIIAIFGLEGLGLRDLWKPGIELLQEFFSALE 179
Query: 185 DSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMHGNNYKQSLLQHF-PDILPL 243
++P ++ + ++ P +F F+++K +++E+ + ++ + G+N+KQ L + PD LP+
Sbjct: 180 ANYPEILKSLIVVRAPKLFAVAFNLVKSYMSEETRRKVVILGDNWKQELTKFISPDQLPV 239
Query: 244 EYGG 247
E+GG
Sbjct: 240 EFGG 243
>gi|169215836 PREDICTED: similar to SEC14p-like protein TAP3 [Homo
sapiens]
Length = 397
Score = 82.8 bits (203), Expect = 3e-16
Identities = 67/244 (27%), Positives = 126/244 (51%), Gaps = 22/244 (9%)
Query: 19 DHSPLLQPGLAALRRRAREAGVPLAPLPLTDS-FLLRFLRARDFDLDLAWRLLKNYYKWR 77
D SP + LA R ++ L+ LP D FLLR+L+AR FDL + +L+ + ++R
Sbjct: 7 DLSPSQEKSLAQFRENIQDV---LSALPNPDDYFLLRWLQARSFDLQKSEDMLRKHMEFR 63
Query: 78 AECPEISADL--HPRSIIGLLKAGYHGVLRSRDPTGSKVLIYRIAHWDPKVF----TAYD 131
+ +++ L P ++ L A +G+ D GS V + + DPK + +
Sbjct: 64 KQ-QDLANILAWQPPEVVRLYNA--NGIC-GHDGEGSPVWYHIVGSLDPKGLLLSASKQE 119
Query: 132 VFRVSLITSELIVQEVETQRNG-------IKAIFDLEGWQFSHAFQITPSVAKKIAAVLT 184
+ R S + EL+++E E Q I AIF LEG ++ + ++ + L
Sbjct: 120 LLRDSFRSCELLLRECELQSQKLGKRVEKIIAIFGLEGLGLRDLWKPGIELLQEFFSALE 179
Query: 185 DSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMHGNNYKQSLLQHF-PDILPL 243
++P ++ + ++ P +F F+++K +++E+ + ++ + G+N+KQ L + PD LP+
Sbjct: 180 ANYPEILKSLIVVRAPKLFAVAFNLVKSYMSEETRRKVVILGDNWKQELTKFISPDQLPV 239
Query: 244 EYGG 247
E+GG
Sbjct: 240 EFGG 243
>gi|169215635 PREDICTED: similar to SEC14p-like protein TAP3 [Homo
sapiens]
Length = 397
Score = 82.8 bits (203), Expect = 3e-16
Identities = 67/244 (27%), Positives = 126/244 (51%), Gaps = 22/244 (9%)
Query: 19 DHSPLLQPGLAALRRRAREAGVPLAPLPLTDS-FLLRFLRARDFDLDLAWRLLKNYYKWR 77
D SP + LA R ++ L+ LP D FLLR+L+AR FDL + +L+ + ++R
Sbjct: 7 DLSPSQEKSLAQFRENIQDV---LSALPNPDDYFLLRWLQARSFDLQKSEDMLRKHMEFR 63
Query: 78 AECPEISADL--HPRSIIGLLKAGYHGVLRSRDPTGSKVLIYRIAHWDPKVF----TAYD 131
+ +++ L P ++ L A +G+ D GS V + + DPK + +
Sbjct: 64 KQ-QDLANILAWQPPEVVRLYNA--NGIC-GHDGEGSPVWYHIVGSLDPKGLLLSASKQE 119
Query: 132 VFRVSLITSELIVQEVETQRNG-------IKAIFDLEGWQFSHAFQITPSVAKKIAAVLT 184
+ R S + EL+++E E Q I AIF LEG ++ + ++ + L
Sbjct: 120 LLRDSFRSCELLLRECELQSQKLGKRVEKIIAIFGLEGLGLRDLWKPGIELLQEFFSALE 179
Query: 185 DSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMHGNNYKQSLLQHF-PDILPL 243
++P ++ + ++ P +F F+++K +++E+ + ++ + G+N+KQ L + PD LP+
Sbjct: 180 ANYPEILKSLIVVRAPKLFAVAFNLVKSYMSEETRRKVVILGDNWKQELTKFISPDQLPV 239
Query: 244 EYGG 247
E+GG
Sbjct: 240 EFGG 243
>gi|150010661 SEC14-like 5 [Homo sapiens]
Length = 696
Score = 63.9 bits (154), Expect = 1e-10
Identities = 60/244 (24%), Positives = 107/244 (43%), Gaps = 21/244 (8%)
Query: 21 SPLLQPGLAALRRRAREAGVPLAPLPLTDSFLLRFLRARDFDLDLAWRLLKNYYKWRAEC 80
+P+ + L LR +E P D +LRFLRA DF LD A +L+ WR +
Sbjct: 239 TPMQESCLIQLRHWLQETHKGKIP---KDEHILRFLRAHDFHLDKAREMLRQSLSWRKQ- 294
Query: 81 PEISADLHPRSIIGLLKAGYHGVLRSRDPTGSKVLIYRIAHWDPKVFTAYDVFRVSLITS 140
++ L LL+ Y G +D G + I R+ D K V +L+
Sbjct: 295 HQVDLLLQTWQPPALLEEFYAGGWHYQDIDGRPLYILRLGQMDTKGLMKA-VGEEALLRH 353
Query: 141 ELIVQEVETQR------------NGIKAIFDLEGWQFSHAFQITPSVAKKIAAVLTDSFP 188
L V E +R + + DLEG H ++ ++ V+ D++P
Sbjct: 354 VLSVNEEGQKRCEGSTRQLGRPISSWTCLLDLEGLNMRHLWRPGVKALLRMIEVVEDNYP 413
Query: 189 LKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMH-GNNYK--QSLLQHFP-DILPLE 244
+ + ++ P +F ++++I PF+ E + + ++ G+NY+ L+ + +++P
Sbjct: 414 ETLGRLLIVRAPRVFPVLWTLISPFINENTRRKFLIYSGSNYQGPGGLVDYLDREVIPDF 473
Query: 245 YGGE 248
GGE
Sbjct: 474 LGGE 477
>gi|221316687 SEC14 (S. cerevisiae)-like 1 isoform c [Homo sapiens]
Length = 681
Score = 57.4 bits (137), Expect = 1e-08
Identities = 51/227 (22%), Positives = 100/227 (44%), Gaps = 18/227 (7%)
Query: 17 LPDHSPLLQPGLAALRRRAREAGVPLAPLPLTDSFLLRFLRARDFDLDLAWRLLKNYYKW 76
L D +PL + L LR+ +E P D +LRFLRARDF++D A ++ W
Sbjct: 214 LGDLTPLQESCLIRLRQWLQETHKGKIP---KDEHILRFLRARDFNIDKAREIMCQSLTW 270
Query: 77 RAECPEISADLHPRSIIGLLKAGYHGVLRSRDPTGSKVLIYRIAHWDPKVFTAYDVFRVS 136
R + ++ L + +L+ Y G D G + + R+ D K + +
Sbjct: 271 RKQ-HQVDYILETWTPPQVLQDYYAGGWHHHDKDGRPLYVLRLGQMDTKGLVR-ALGEEA 328
Query: 137 LITSELIVQEVETQR------------NGIKAIFDLEGWQFSHAFQITPSVAKKIAAVLT 184
L+ L + E +R + + DLEG H ++ +I V+
Sbjct: 329 LLRYVLSINEEGLRRCEENTKVFGRPISSWTCLVDLEGLNMRHLWRPGVKALLRIIEVVE 388
Query: 185 DSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMH-GNNYK 230
++P + + ++ P +F +++++ PF+ + + + ++ GN+Y+
Sbjct: 389 ANYPETLGRLLILRAPRVFPVLWTLVSPFIDDNTRRKFLIYAGNDYQ 435
>gi|221316680 SEC14 (S. cerevisiae)-like 1 isoform a [Homo sapiens]
Length = 715
Score = 57.4 bits (137), Expect = 1e-08
Identities = 51/227 (22%), Positives = 100/227 (44%), Gaps = 18/227 (7%)
Query: 17 LPDHSPLLQPGLAALRRRAREAGVPLAPLPLTDSFLLRFLRARDFDLDLAWRLLKNYYKW 76
L D +PL + L LR+ +E P D +LRFLRARDF++D A ++ W
Sbjct: 248 LGDLTPLQESCLIRLRQWLQETHKGKIP---KDEHILRFLRARDFNIDKAREIMCQSLTW 304
Query: 77 RAECPEISADLHPRSIIGLLKAGYHGVLRSRDPTGSKVLIYRIAHWDPKVFTAYDVFRVS 136
R + ++ L + +L+ Y G D G + + R+ D K + +
Sbjct: 305 RKQ-HQVDYILETWTPPQVLQDYYAGGWHHHDKDGRPLYVLRLGQMDTKGLVR-ALGEEA 362
Query: 137 LITSELIVQEVETQR------------NGIKAIFDLEGWQFSHAFQITPSVAKKIAAVLT 184
L+ L + E +R + + DLEG H ++ +I V+
Sbjct: 363 LLRYVLSINEEGLRRCEENTKVFGRPISSWTCLVDLEGLNMRHLWRPGVKALLRIIEVVE 422
Query: 185 DSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMH-GNNYK 230
++P + + ++ P +F +++++ PF+ + + + ++ GN+Y+
Sbjct: 423 ANYPETLGRLLILRAPRVFPVLWTLVSPFIDDNTRRKFLIYAGNDYQ 469
>gi|221316676 SEC14 (S. cerevisiae)-like 1 isoform a [Homo sapiens]
Length = 715
Score = 57.4 bits (137), Expect = 1e-08
Identities = 51/227 (22%), Positives = 100/227 (44%), Gaps = 18/227 (7%)
Query: 17 LPDHSPLLQPGLAALRRRAREAGVPLAPLPLTDSFLLRFLRARDFDLDLAWRLLKNYYKW 76
L D +PL + L LR+ +E P D +LRFLRARDF++D A ++ W
Sbjct: 248 LGDLTPLQESCLIRLRQWLQETHKGKIP---KDEHILRFLRARDFNIDKAREIMCQSLTW 304
Query: 77 RAECPEISADLHPRSIIGLLKAGYHGVLRSRDPTGSKVLIYRIAHWDPKVFTAYDVFRVS 136
R + ++ L + +L+ Y G D G + + R+ D K + +
Sbjct: 305 RKQ-HQVDYILETWTPPQVLQDYYAGGWHHHDKDGRPLYVLRLGQMDTKGLVR-ALGEEA 362
Query: 137 LITSELIVQEVETQR------------NGIKAIFDLEGWQFSHAFQITPSVAKKIAAVLT 184
L+ L + E +R + + DLEG H ++ +I V+
Sbjct: 363 LLRYVLSINEEGLRRCEENTKVFGRPISSWTCLVDLEGLNMRHLWRPGVKALLRIIEVVE 422
Query: 185 DSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMH-GNNYK 230
++P + + ++ P +F +++++ PF+ + + + ++ GN+Y+
Sbjct: 423 ANYPETLGRLLILRAPRVFPVLWTLVSPFIDDNTRRKFLIYAGNDYQ 469
>gi|221316684 SEC14 (S. cerevisiae)-like 1 isoform b [Homo sapiens]
Length = 719
Score = 57.4 bits (137), Expect = 1e-08
Identities = 51/227 (22%), Positives = 100/227 (44%), Gaps = 18/227 (7%)
Query: 17 LPDHSPLLQPGLAALRRRAREAGVPLAPLPLTDSFLLRFLRARDFDLDLAWRLLKNYYKW 76
L D +PL + L LR+ +E P D +LRFLRARDF++D A ++ W
Sbjct: 248 LGDLTPLQESCLIRLRQWLQETHKGKIP---KDEHILRFLRARDFNIDKAREIMCQSLTW 304
Query: 77 RAECPEISADLHPRSIIGLLKAGYHGVLRSRDPTGSKVLIYRIAHWDPKVFTAYDVFRVS 136
R + ++ L + +L+ Y G D G + + R+ D K + +
Sbjct: 305 RKQ-HQVDYILETWTPPQVLQDYYAGGWHHHDKDGRPLYVLRLGQMDTKGLVR-ALGEEA 362
Query: 137 LITSELIVQEVETQR------------NGIKAIFDLEGWQFSHAFQITPSVAKKIAAVLT 184
L+ L + E +R + + DLEG H ++ +I V+
Sbjct: 363 LLRYVLSINEEGLRRCEENTKVFGRPISSWTCLVDLEGLNMRHLWRPGVKALLRIIEVVE 422
Query: 185 DSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMH-GNNYK 230
++P + + ++ P +F +++++ PF+ + + + ++ GN+Y+
Sbjct: 423 ANYPETLGRLLILRAPRVFPVLWTLVSPFIDDNTRRKFLIYAGNDYQ 469
>gi|221316682 SEC14 (S. cerevisiae)-like 1 isoform a [Homo sapiens]
Length = 715
Score = 57.4 bits (137), Expect = 1e-08
Identities = 51/227 (22%), Positives = 100/227 (44%), Gaps = 18/227 (7%)
Query: 17 LPDHSPLLQPGLAALRRRAREAGVPLAPLPLTDSFLLRFLRARDFDLDLAWRLLKNYYKW 76
L D +PL + L LR+ +E P D +LRFLRARDF++D A ++ W
Sbjct: 248 LGDLTPLQESCLIRLRQWLQETHKGKIP---KDEHILRFLRARDFNIDKAREIMCQSLTW 304
Query: 77 RAECPEISADLHPRSIIGLLKAGYHGVLRSRDPTGSKVLIYRIAHWDPKVFTAYDVFRVS 136
R + ++ L + +L+ Y G D G + + R+ D K + +
Sbjct: 305 RKQ-HQVDYILETWTPPQVLQDYYAGGWHHHDKDGRPLYVLRLGQMDTKGLVR-ALGEEA 362
Query: 137 LITSELIVQEVETQR------------NGIKAIFDLEGWQFSHAFQITPSVAKKIAAVLT 184
L+ L + E +R + + DLEG H ++ +I V+
Sbjct: 363 LLRYVLSINEEGLRRCEENTKVFGRPISSWTCLVDLEGLNMRHLWRPGVKALLRIIEVVE 422
Query: 185 DSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMH-GNNYK 230
++P + + ++ P +F +++++ PF+ + + + ++ GN+Y+
Sbjct: 423 ANYPETLGRLLILRAPRVFPVLWTLVSPFIDDNTRRKFLIYAGNDYQ 469
>gi|55770862 thyroglobulin [Homo sapiens]
Length = 2768
Score = 30.8 bits (68), Expect = 1.4
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 22 PLLQPGLAALRRRAREAGVPLAPL-PLTDSFLLRFLRARDFDLDLAWRLLKNYYKWRAEC 80
PL + L A R R + L PL P ++F +FLR D+ + LA + ++Y+ R
Sbjct: 952 PLGESFLVAKGIRLRNEDLGLPPLFPPREAFAEQFLRGSDYAIRLAAQSTLSFYQRRRFS 1011
Query: 81 PEISA 85
P+ SA
Sbjct: 1012 PDDSA 1016
>gi|148539848 desmocollin 3 isoform Dsc3b preproprotein [Homo
sapiens]
Length = 839
Score = 29.3 bits (64), Expect = 4.0
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 115 LIYRIAHWDPKVFTAYDVFRVSLITSELIVQEVETQRN 152
L Y+ H DPK + D S+ITS+++ +EVET +N
Sbjct: 506 LRYKKLH-DPKGWITIDEISGSIITSKILDREVETPKN 542
>gi|148539846 desmocollin 3 isoform Dsc3a preproprotein [Homo
sapiens]
Length = 896
Score = 29.3 bits (64), Expect = 4.0
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 115 LIYRIAHWDPKVFTAYDVFRVSLITSELIVQEVETQRN 152
L Y+ H DPK + D S+ITS+++ +EVET +N
Sbjct: 506 LRYKKLH-DPKGWITIDEISGSIITSKILDREVETPKN 542
>gi|146219843 Snf2-related CBP activator protein [Homo sapiens]
Length = 3230
Score = 29.3 bits (64), Expect = 4.0
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 7 QPSAGPQLNALPDHSPLLQPGLAALRRRAREAGVPLAP 44
+P GP+L+A P P+ Q A+L A AG PL P
Sbjct: 1025 RPPPGPELSAQPTPGPVPQVLPASLMVSASPAGPPLIP 1062
>gi|148529025 pleckstrin homology domain containing, family G (with
RhoGef domain) member 4B [Homo sapiens]
Length = 1271
Score = 28.9 bits (63), Expect = 5.2
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 7 QPSAGPQLNALPDHSPLLQPGLAALRRRAREAGVPL 42
QP +GP+ + PDH+ + GL A E +PL
Sbjct: 734 QPDSGPRDSCQPDHTSVFSKGLEVTSTVATEKKLPL 769
>gi|158138530 cytochrome P450, family 4, subfamily F, polypeptide 22
[Homo sapiens]
Length = 531
Score = 28.5 bits (62), Expect = 6.8
Identities = 26/79 (32%), Positives = 34/79 (43%), Gaps = 9/79 (11%)
Query: 203 FHAVFSMIKPFLTEKIKER---IHMHGNNY----KQSLLQHFPDILPL--EYGGEEFSME 253
F M+ F TE I+ER + G KQ F D+L L + G+E S E
Sbjct: 264 FRQACDMVHHFTTEVIQERRRALRQQGAEAWLKAKQGKTLDFIDVLLLARDEDGKELSDE 323
Query: 254 DICQEWTNFIMKSEDYLSS 272
DI E F+ + D SS
Sbjct: 324 DIRAEADTFMFEGHDTTSS 342
>gi|34452688 regulator of G-protein signalling 11 isoform 1 [Homo
sapiens]
Length = 467
Score = 28.5 bits (62), Expect = 6.8
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 205 AVFSMIKPFLTEKIKERIHMHGNNYKQSLLQ-----HFPDILPLEYGGEEFSMEDICQE 258
A + M P + K R+ G ++++ L HF D L E+ GE S + C+E
Sbjct: 280 AYWVMNAPTVAAPTKLRVERWGFSFRELLEDPVGRAHFMDFLGKEFSGENLSFWEACEE 338
>gi|38201692 RAS p21 protein activator 3 [Homo sapiens]
Length = 834
Score = 28.5 bits (62), Expect = 6.8
Identities = 28/138 (20%), Positives = 60/138 (43%), Gaps = 13/138 (9%)
Query: 131 DVFRVSLITSELIVQEVETQR-NGIKAIFDLEGWQFSHAFQITPSVAKKIAAVLTDSFPL 189
DVFR I ++ +Q+ + Q+ + F L+ Q + +++ V+TD+ +
Sbjct: 84 DVFRRDSIIGKVAIQKEDLQKYHNRDTWFQLQHVDADSEVQGKVHLELRLSEVITDTGVV 143
Query: 190 ---------KVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMHGNNYKQSLLQHFPDI 240
+ +G+ ++N +A ++ PF +E K ++ NN + + +F
Sbjct: 144 CHKLATRIVECQGLPIVNGQCDPYATVTLAGPFRSEAKKTKVKRKTNNPQFDEVFYFEVT 203
Query: 241 LPLEYGGE---EFSMEDI 255
P Y + +F ED+
Sbjct: 204 RPCSYSKKSHFDFEEEDV 221
>gi|4506507 regulator of G-protein signalling 11 isoform 2 [Homo
sapiens]
Length = 446
Score = 28.5 bits (62), Expect = 6.8
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 205 AVFSMIKPFLTEKIKERIHMHGNNYKQSLLQ-----HFPDILPLEYGGEEFSMEDICQE 258
A + M P + K R+ G ++++ L HF D L E+ GE S + C+E
Sbjct: 259 AYWVMNAPTVAAPTKLRVERWGFSFRELLEDPVGRAHFMDFLGKEFSGENLSFWEACEE 317
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.138 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,430,223
Number of Sequences: 37866
Number of extensions: 452378
Number of successful extensions: 1150
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1099
Number of HSP's gapped (non-prelim): 32
length of query: 278
length of database: 18,247,518
effective HSP length: 101
effective length of query: 177
effective length of database: 14,423,052
effective search space: 2552880204
effective search space used: 2552880204
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.