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Search of human proteins with 4506453
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4506453 retinol-binding protein 3 precursor [Homo sapiens]
(1247 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4506453 retinol-binding protein 3 precursor [Homo sapiens] 2466 0.0
gi|58761508 midnolin [Homo sapiens] 36 0.26
gi|153791893 zinc finger, BED-type containing 4 [Homo sapiens] 35 0.45
gi|154426306 kinesin family member 24 [Homo sapiens] 35 0.58
gi|126507087 bone morphogenetic protein 3 preproprotein [Homo sa... 34 1.00
gi|110349719 titin isoform N2-A [Homo sapiens] 33 1.3
gi|110349717 titin isoform novex-2 [Homo sapiens] 33 1.3
gi|110349713 titin isoform novex-1 [Homo sapiens] 33 1.3
gi|110349715 titin isoform N2-B [Homo sapiens] 33 1.3
gi|64084766 fidgetin [Homo sapiens] 33 1.3
gi|83627721 NIMA-related kinase 5 [Homo sapiens] 32 3.8
gi|213512168 hypothetical protein LOC259308 [Homo sapiens] 32 3.8
gi|115430231 REC8 homolog [Homo sapiens] 32 4.9
gi|115430229 REC8 homolog [Homo sapiens] 32 4.9
gi|31543063 glycerate kinase isoform 1 [Homo sapiens] 31 6.5
gi|191252785 centrobin, centrosomal BRCA2 interacting protein is... 31 6.5
gi|80861396 centrobin, centrosomal BRCA2 interacting protein iso... 31 6.5
gi|68160937 tripartite motif-containing 25 [Homo sapiens] 31 8.4
gi|194306623 immunoglobulin superfamily containing leucine-rich ... 31 8.4
gi|194306621 immunoglobulin superfamily containing leucine-rich ... 31 8.4
gi|39930401 immunoglobulin superfamily containing leucine-rich r... 31 8.4
gi|194306618 immunoglobulin superfamily containing leucine-rich ... 31 8.4
>gi|4506453 retinol-binding protein 3 precursor [Homo sapiens]
Length = 1247
Score = 2466 bits (6391), Expect = 0.0
Identities = 1247/1247 (100%), Positives = 1247/1247 (100%)
Query: 1 MMREWVLLMSVLLCGLAGPTHLFQPSLVLDMAKVLLDNYCFPENLLGMQEAIQQAIKSHE 60
MMREWVLLMSVLLCGLAGPTHLFQPSLVLDMAKVLLDNYCFPENLLGMQEAIQQAIKSHE
Sbjct: 1 MMREWVLLMSVLLCGLAGPTHLFQPSLVLDMAKVLLDNYCFPENLLGMQEAIQQAIKSHE 60
Query: 61 ILSISDPQTLASVLTAGVQSSLNDPRLVISYEPSTPEPPPQVPALTSLSEEELLAWLQRG 120
ILSISDPQTLASVLTAGVQSSLNDPRLVISYEPSTPEPPPQVPALTSLSEEELLAWLQRG
Sbjct: 61 ILSISDPQTLASVLTAGVQSSLNDPRLVISYEPSTPEPPPQVPALTSLSEEELLAWLQRG 120
Query: 121 LRHEVLEGNVGYLRVDSVPGQEVLSMMGEFLVAHVWGNLMGTSALVLDLRHCTGGQVSGI 180
LRHEVLEGNVGYLRVDSVPGQEVLSMMGEFLVAHVWGNLMGTSALVLDLRHCTGGQVSGI
Sbjct: 121 LRHEVLEGNVGYLRVDSVPGQEVLSMMGEFLVAHVWGNLMGTSALVLDLRHCTGGQVSGI 180
Query: 181 PYIISYLHPGNTILHVDTIYNRPSNTTTEIWTLPQVLGERYGADKDVVVLTSSQTRGVAE 240
PYIISYLHPGNTILHVDTIYNRPSNTTTEIWTLPQVLGERYGADKDVVVLTSSQTRGVAE
Sbjct: 181 PYIISYLHPGNTILHVDTIYNRPSNTTTEIWTLPQVLGERYGADKDVVVLTSSQTRGVAE 240
Query: 241 DIAHILKQMRRAIVVGERTGGGALDLRKLRIGESDFFFTVPVSRSLGPLGGGSQTWEGSG 300
DIAHILKQMRRAIVVGERTGGGALDLRKLRIGESDFFFTVPVSRSLGPLGGGSQTWEGSG
Sbjct: 241 DIAHILKQMRRAIVVGERTGGGALDLRKLRIGESDFFFTVPVSRSLGPLGGGSQTWEGSG 300
Query: 301 VLPCVGTPAEQALEKALAILTLRSALPGVVHCLQEVLKDYYTLVDRVPTLLQHLASMDFS 360
VLPCVGTPAEQALEKALAILTLRSALPGVVHCLQEVLKDYYTLVDRVPTLLQHLASMDFS
Sbjct: 301 VLPCVGTPAEQALEKALAILTLRSALPGVVHCLQEVLKDYYTLVDRVPTLLQHLASMDFS 360
Query: 361 TVVSEEDLVTKLNAGLQAASEDPRLLVRAIGPTETPSWPAPDAAAEDSPGVAPELPEDEA 420
TVVSEEDLVTKLNAGLQAASEDPRLLVRAIGPTETPSWPAPDAAAEDSPGVAPELPEDEA
Sbjct: 361 TVVSEEDLVTKLNAGLQAASEDPRLLVRAIGPTETPSWPAPDAAAEDSPGVAPELPEDEA 420
Query: 421 IRQALVDSVFQVSVLPGNVGYLRFDSFADASVLGVLAPYVLRQVWEPLQDTEHLIMDLRH 480
IRQALVDSVFQVSVLPGNVGYLRFDSFADASVLGVLAPYVLRQVWEPLQDTEHLIMDLRH
Sbjct: 421 IRQALVDSVFQVSVLPGNVGYLRFDSFADASVLGVLAPYVLRQVWEPLQDTEHLIMDLRH 480
Query: 481 NPGGPSSAVPLLLSYFQGPEAGPVHLFTTYDRRTNITQEHFSHMELPGPRYSTQRGVYLL 540
NPGGPSSAVPLLLSYFQGPEAGPVHLFTTYDRRTNITQEHFSHMELPGPRYSTQRGVYLL
Sbjct: 481 NPGGPSSAVPLLLSYFQGPEAGPVHLFTTYDRRTNITQEHFSHMELPGPRYSTQRGVYLL 540
Query: 541 TSHRTATAAEEFAFLMQSLGWATLVGEITAGNLLHTRTVPLLDTPEGSLALTVPVLTFID 600
TSHRTATAAEEFAFLMQSLGWATLVGEITAGNLLHTRTVPLLDTPEGSLALTVPVLTFID
Sbjct: 541 TSHRTATAAEEFAFLMQSLGWATLVGEITAGNLLHTRTVPLLDTPEGSLALTVPVLTFID 600
Query: 601 NHGEAWLGGGVVPDAIVLAEEALDKAQEVLEFHQSLGALVEGTGHLLEAHYARPEVVGQT 660
NHGEAWLGGGVVPDAIVLAEEALDKAQEVLEFHQSLGALVEGTGHLLEAHYARPEVVGQT
Sbjct: 601 NHGEAWLGGGVVPDAIVLAEEALDKAQEVLEFHQSLGALVEGTGHLLEAHYARPEVVGQT 660
Query: 661 SALLRAKLAQGAYRTAVDLESLASQLTADLQEVSGDHRLLVFHSPGELVVEEAPPPPPAV 720
SALLRAKLAQGAYRTAVDLESLASQLTADLQEVSGDHRLLVFHSPGELVVEEAPPPPPAV
Sbjct: 661 SALLRAKLAQGAYRTAVDLESLASQLTADLQEVSGDHRLLVFHSPGELVVEEAPPPPPAV 720
Query: 721 PSPEELTYLIEALFKTEVLPGQLGYLRFDAMAELETVKAVGPQLVRLVWQQLVDTAALVI 780
PSPEELTYLIEALFKTEVLPGQLGYLRFDAMAELETVKAVGPQLVRLVWQQLVDTAALVI
Sbjct: 721 PSPEELTYLIEALFKTEVLPGQLGYLRFDAMAELETVKAVGPQLVRLVWQQLVDTAALVI 780
Query: 781 DLRYNPGSYSTAIPLLCSYFFEAEPRQHLYSVFDRATSKVTEVWTLPQVAGQRYGSHKDL 840
DLRYNPGSYSTAIPLLCSYFFEAEPRQHLYSVFDRATSKVTEVWTLPQVAGQRYGSHKDL
Sbjct: 781 DLRYNPGSYSTAIPLLCSYFFEAEPRQHLYSVFDRATSKVTEVWTLPQVAGQRYGSHKDL 840
Query: 841 YILMSHTSGSAAEAFAHTMQDLQRATVIGEPTAGGALSVGIYQVGSSPLYASMPTQMAMS 900
YILMSHTSGSAAEAFAHTMQDLQRATVIGEPTAGGALSVGIYQVGSSPLYASMPTQMAMS
Sbjct: 841 YILMSHTSGSAAEAFAHTMQDLQRATVIGEPTAGGALSVGIYQVGSSPLYASMPTQMAMS 900
Query: 901 ATTGKAWDLAGVEPDITVPMSEALSIAQDIVALRAKVPTVLQTAGKLVADNYASAELGAK 960
ATTGKAWDLAGVEPDITVPMSEALSIAQDIVALRAKVPTVLQTAGKLVADNYASAELGAK
Sbjct: 901 ATTGKAWDLAGVEPDITVPMSEALSIAQDIVALRAKVPTVLQTAGKLVADNYASAELGAK 960
Query: 961 MATKLSGLQSRYSRVTSEVALAEILGADLQMLSGDPHLKAAHIPENAKDRIPGIVPMQIP 1020
MATKLSGLQSRYSRVTSEVALAEILGADLQMLSGDPHLKAAHIPENAKDRIPGIVPMQIP
Sbjct: 961 MATKLSGLQSRYSRVTSEVALAEILGADLQMLSGDPHLKAAHIPENAKDRIPGIVPMQIP 1020
Query: 1021 SPEVFEELIKFSFHTNVLEDNIGYLRFDMFGDGELLTQVSRLLVEHIWKKIMHTDAMIID 1080
SPEVFEELIKFSFHTNVLEDNIGYLRFDMFGDGELLTQVSRLLVEHIWKKIMHTDAMIID
Sbjct: 1021 SPEVFEELIKFSFHTNVLEDNIGYLRFDMFGDGELLTQVSRLLVEHIWKKIMHTDAMIID 1080
Query: 1081 MRFNIGGPTSSIPILCSYFFDEGPPVLLDKIYSRPDDSVSELWTHAQVVGERYGSKKSMV 1140
MRFNIGGPTSSIPILCSYFFDEGPPVLLDKIYSRPDDSVSELWTHAQVVGERYGSKKSMV
Sbjct: 1081 MRFNIGGPTSSIPILCSYFFDEGPPVLLDKIYSRPDDSVSELWTHAQVVGERYGSKKSMV 1140
Query: 1141 ILTSSVTAGTAEEFTYIMKRLGRALVIGEVTSGGCQPPQTYHVDDTNLYLTIPTARSVGA 1200
ILTSSVTAGTAEEFTYIMKRLGRALVIGEVTSGGCQPPQTYHVDDTNLYLTIPTARSVGA
Sbjct: 1141 ILTSSVTAGTAEEFTYIMKRLGRALVIGEVTSGGCQPPQTYHVDDTNLYLTIPTARSVGA 1200
Query: 1201 SDGSSWEGVGVTPHVVVPAEEALARAKEMLQHNQLRVKRSPGLQDHL 1247
SDGSSWEGVGVTPHVVVPAEEALARAKEMLQHNQLRVKRSPGLQDHL
Sbjct: 1201 SDGSSWEGVGVTPHVVVPAEEALARAKEMLQHNQLRVKRSPGLQDHL 1247
>gi|58761508 midnolin [Homo sapiens]
Length = 468
Score = 35.8 bits (81), Expect = 0.26
Identities = 38/124 (30%), Positives = 57/124 (45%), Gaps = 16/124 (12%)
Query: 870 EPTAGGALSV------GIYQVGSSPLYASMPTQMAMSATTGKAWDLAGVEPDITVP---- 919
EP GGA S G ++G P + P +A+ +TTG +DLA V PD TV
Sbjct: 2 EPQPGGARSCRRGAPGGACELG--PAAEAAPMSLAIHSTTGTRYDLA-VPPDETVEGLRK 58
Query: 920 -MSEALSIAQDIVALRAKVPTVLQTAGKLVADNYASAELGAKMATKLSGLQSRYSRVTSE 978
+S+ L + ++ +AL K + ++GKL + T +GL S+ SR
Sbjct: 59 RLSQRLKVPKERLALLHKDTRL--SSGKLQEFGVGDGSKLTLVPTVEAGLMSQASRPEQS 116
Query: 979 VALA 982
V A
Sbjct: 117 VMQA 120
>gi|153791893 zinc finger, BED-type containing 4 [Homo sapiens]
Length = 1171
Score = 35.0 bits (79), Expect = 0.45
Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 642 GTGHLLEAHYAR-PEVVGQTSALLRAKLAQGAYRTAVDLESLASQLTADLQEVSGDHRLL 700
GT L+ Y R PEVVG L A LA Y T ES +S+LT DL V + +
Sbjct: 493 GTSCLMRHLYRRHPEVVGSQKGFLGASLANSPYATLASAESSSSKLT-DLPTVVTKNNQV 551
Query: 701 VF 702
+F
Sbjct: 552 MF 553
>gi|154426306 kinesin family member 24 [Homo sapiens]
Length = 1368
Score = 34.7 bits (78), Expect = 0.58
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Query: 321 TLRSALPGVVHCLQEVLKDYYTLVDRVPTLLQHLASMDFSTVVSEEDLVTKLNAG-LQAA 379
TL A V+ QE L + L + TL+ LAS DF V++ D + L + +Q+
Sbjct: 1286 TLEQAQQVVIRAHQEQLDEMAELGFKEETLMSQLASNDFEDFVTQLDEIMVLKSKCIQSL 1345
Query: 380 SEDPRLLVRAIGPTETPSWPAP 401
+L + GPT P P
Sbjct: 1346 RSQLQLYLTCHGPTAAPEGTVP 1367
>gi|126507087 bone morphogenetic protein 3 preproprotein [Homo
sapiens]
Length = 472
Score = 33.9 bits (76), Expect = 1.00
Identities = 30/88 (34%), Positives = 38/88 (43%), Gaps = 14/88 (15%)
Query: 251 RAIVVGERTGGGALDLR---KLRIGES-----DFFFTVPVSRSLGPLGGGSQTW------ 296
R V G+RT GG D + ++ E D + TV +R+ G L GGSQ W
Sbjct: 33 RKAVPGDRTAGGGPDSELQPQDKVSEHMLRLYDRYSTVQAARTPGSLEGGSQPWRPRLLR 92
Query: 297 EGSGVLPCVGTPAEQALEKALAILTLRS 324
EG+ V AE K L I L S
Sbjct: 93 EGNTVRSFRAAAAETLERKGLYIFNLTS 120
>gi|110349719 titin isoform N2-A [Homo sapiens]
Length = 33423
Score = 33.5 bits (75), Expect = 1.3
Identities = 26/99 (26%), Positives = 41/99 (41%), Gaps = 3/99 (3%)
Query: 324 SALPGVVHCLQEVLKDYYTLVDRVPTLLQHLASMDFSTVVSEEDLVTKLNA---GLQAAS 380
S + G + +EV D + V++VP + S + + E VT +NA G +
Sbjct: 29961 SQVTGYIVERKEVRADRWVRVNKVPVTMTRYRSTGLTEGLEYEHRVTAINARGSGKPSRP 30020
Query: 381 EDPRLLVRAIGPTETPSWPAPDAAAEDSPGVAPELPEDE 419
P + + I P P P S +A +PEDE
Sbjct: 30021 SKPIVAMDPIAPPGKPQNPRVTDTTRTSVSLAWSVPEDE 30059
>gi|110349717 titin isoform novex-2 [Homo sapiens]
Length = 27118
Score = 33.5 bits (75), Expect = 1.3
Identities = 26/99 (26%), Positives = 41/99 (41%), Gaps = 3/99 (3%)
Query: 324 SALPGVVHCLQEVLKDYYTLVDRVPTLLQHLASMDFSTVVSEEDLVTKLNA---GLQAAS 380
S + G + +EV D + V++VP + S + + E VT +NA G +
Sbjct: 23656 SQVTGYIVERKEVRADRWVRVNKVPVTMTRYRSTGLTEGLEYEHRVTAINARGSGKPSRP 23715
Query: 381 EDPRLLVRAIGPTETPSWPAPDAAAEDSPGVAPELPEDE 419
P + + I P P P S +A +PEDE
Sbjct: 23716 SKPIVAMDPIAPPGKPQNPRVTDTTRTSVSLAWSVPEDE 23754
>gi|110349713 titin isoform novex-1 [Homo sapiens]
Length = 27051
Score = 33.5 bits (75), Expect = 1.3
Identities = 26/99 (26%), Positives = 41/99 (41%), Gaps = 3/99 (3%)
Query: 324 SALPGVVHCLQEVLKDYYTLVDRVPTLLQHLASMDFSTVVSEEDLVTKLNA---GLQAAS 380
S + G + +EV D + V++VP + S + + E VT +NA G +
Sbjct: 23589 SQVTGYIVERKEVRADRWVRVNKVPVTMTRYRSTGLTEGLEYEHRVTAINARGSGKPSRP 23648
Query: 381 EDPRLLVRAIGPTETPSWPAPDAAAEDSPGVAPELPEDE 419
P + + I P P P S +A +PEDE
Sbjct: 23649 SKPIVAMDPIAPPGKPQNPRVTDTTRTSVSLAWSVPEDE 23687
>gi|110349715 titin isoform N2-B [Homo sapiens]
Length = 26926
Score = 33.5 bits (75), Expect = 1.3
Identities = 26/99 (26%), Positives = 41/99 (41%), Gaps = 3/99 (3%)
Query: 324 SALPGVVHCLQEVLKDYYTLVDRVPTLLQHLASMDFSTVVSEEDLVTKLNA---GLQAAS 380
S + G + +EV D + V++VP + S + + E VT +NA G +
Sbjct: 23464 SQVTGYIVERKEVRADRWVRVNKVPVTMTRYRSTGLTEGLEYEHRVTAINARGSGKPSRP 23523
Query: 381 EDPRLLVRAIGPTETPSWPAPDAAAEDSPGVAPELPEDE 419
P + + I P P P S +A +PEDE
Sbjct: 23524 SKPIVAMDPIAPPGKPQNPRVTDTTRTSVSLAWSVPEDE 23562
>gi|64084766 fidgetin [Homo sapiens]
Length = 759
Score = 33.5 bits (75), Expect = 1.3
Identities = 27/109 (24%), Positives = 39/109 (35%)
Query: 612 VPDAIVLAEEALDKAQEVLEFHQSLGALVEGTGHLLEAHYARPEVVGQTSALLRAKLAQG 671
VPD I ++ + A + S+G+ +L E Y+ T L A L
Sbjct: 124 VPDVITASKAGVSSALPPADVSASIGSSPGVASNLTEPSYSSSTCGSHTVPSLHAGLPSQ 183
Query: 672 AYRTAVDLESLASQLTADLQEVSGDHRLLVFHSPGELVVEEAPPPPPAV 720
Y + L S ++ HS G L PPPPPA+
Sbjct: 184 EYAPGYNGSYLHSTYSSQPAPALPSPHPSPLHSSGLLQPPPPPPPPPAL 232
>gi|83627721 NIMA-related kinase 5 [Homo sapiens]
Length = 708
Score = 32.0 bits (71), Expect = 3.8
Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 29/118 (24%)
Query: 109 SEEELLAW---LQRGLRH----EVLEGNVGYLRVDSVPGQEVLSMMGEFLVAHVWGNLMG 161
SE+++L W + GL+H ++L ++ + + +++ +G+F +A V N M
Sbjct: 101 SEDQILGWFVQISLGLKHIHDRKILHRDIKAQNI-FLSKNGMVAKLGDFGIARVLNNSME 159
Query: 162 TSALVLDLRHCTGGQVSGIPYIISYLHPGNTILHVDTIYNRPSNTTTEIWTLPQVLGE 219
+ R C G PY YL P + N+P N T+IW+L VL E
Sbjct: 160 LA------RTCIG-----TPY---YLSP-------EICQNKPYNNKTDIWSLGCVLYE 196
>gi|213512168 hypothetical protein LOC259308 [Homo sapiens]
Length = 1335
Score = 32.0 bits (71), Expect = 3.8
Identities = 18/84 (21%), Positives = 36/84 (42%)
Query: 640 VEGTGHLLEAHYARPEVVGQTSALLRAKLAQGAYRTAVDLESLASQLTADLQEVSGDHRL 699
+E H H + ++ + + LR K+ + + + Q A + +S L
Sbjct: 871 LESQTHPTSPHSLQTHILTKLNFHLRKKVLEIQWGIPIRARKSREQTVAAPENISTQKSL 930
Query: 700 LVFHSPGELVVEEAPPPPPAVPSP 723
+ GE +++E P PP +P+P
Sbjct: 931 ESLNHQGETLLQELPIPPDTLPAP 954
>gi|115430231 REC8 homolog [Homo sapiens]
Length = 547
Score = 31.6 bits (70), Expect = 4.9
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 368 LVTKLNAGLQAASEDPRLLVRAIGPTETPSWPAPDAAAEDSPGVAPELPE 417
L+ L L+AA E+ + + I P E +WP +A + V PELPE
Sbjct: 413 LMVSLEISLEAAEEE-KSRISLIPPEERWAWPEVEAPEAPALPVVPELPE 461
>gi|115430229 REC8 homolog [Homo sapiens]
Length = 547
Score = 31.6 bits (70), Expect = 4.9
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 368 LVTKLNAGLQAASEDPRLLVRAIGPTETPSWPAPDAAAEDSPGVAPELPE 417
L+ L L+AA E+ + + I P E +WP +A + V PELPE
Sbjct: 413 LMVSLEISLEAAEEE-KSRISLIPPEERWAWPEVEAPEAPALPVVPELPE 461
>gi|31543063 glycerate kinase isoform 1 [Homo sapiens]
Length = 523
Score = 31.2 bits (69), Expect = 6.5
Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 11/113 (9%)
Query: 626 AQEVLEFHQSLGALVEGTGHLLEAHYARPEVVGQTSALL----RAKLAQGAYRTAVDLES 681
A+E+L H LV+G + + A E G+ LL R ++ +GA D ++
Sbjct: 97 AEELLGQH-----LVQGVISVPKGIRAAMERAGKQEMLLKPHSRVQVFEGAEDNLPDRDA 151
Query: 682 LASQLTAD--LQEVSGDHRLLVFHSPGELVVEEAPPPPPAVPSPEELTYLIEA 732
L + L + ++ D LLV S G + AP PP + + LT L+ A
Sbjct: 152 LRAALAIQQLAEGLTADDLLLVLISGGGSALLPAPIPPVTLEEKQTLTRLLAA 204
>gi|191252785 centrobin, centrosomal BRCA2 interacting protein
isoform alpha [Homo sapiens]
Length = 903
Score = 31.2 bits (69), Expect = 6.5
Identities = 29/89 (32%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
Query: 334 QEVLKDYYTLVDRVPTLLQHLASMDFSTVVSEEDLVTKLNAGLQAASEDPRLLVRAIGPT 393
Q+V +DY + R + L S + +LV +L A LQA ++ L+ P
Sbjct: 515 QQVAEDYELRLAREQARVCELQSGNQQLEEQRVELVERLQAMLQAHWDEANQLLSTTLPP 574
Query: 394 ETPSWPAPDAAAEDSPGVAPELPEDEAIR 422
P PAP A SPG P+ PE E R
Sbjct: 575 PNP--PAP-PAGPSSPG--PQEPEKEERR 598
>gi|80861396 centrobin, centrosomal BRCA2 interacting protein
isoform beta [Homo sapiens]
Length = 925
Score = 31.2 bits (69), Expect = 6.5
Identities = 29/89 (32%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
Query: 334 QEVLKDYYTLVDRVPTLLQHLASMDFSTVVSEEDLVTKLNAGLQAASEDPRLLVRAIGPT 393
Q+V +DY + R + L S + +LV +L A LQA ++ L+ P
Sbjct: 515 QQVAEDYELRLAREQARVCELQSGNQQLEEQRVELVERLQAMLQAHWDEANQLLSTTLPP 574
Query: 394 ETPSWPAPDAAAEDSPGVAPELPEDEAIR 422
P PAP A SPG P+ PE E R
Sbjct: 575 PNP--PAP-PAGPSSPG--PQEPEKEERR 598
>gi|68160937 tripartite motif-containing 25 [Homo sapiens]
Length = 630
Score = 30.8 bits (68), Expect = 8.4
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 21/90 (23%)
Query: 664 LRAKLAQGAYRTAVDLESLASQLTADLQEVS------GDHRLLVFHS---PGELVVEE-- 712
L KL +G +++ +DL++ Q LQE + G+H H P + V +E
Sbjct: 329 LNHKLIKGIHQSTIDLKNELKQCIGRLQEPTPSSGDPGEHDPASTHKSTRPVKKVSKEEK 388
Query: 713 ---APPPPPAVPS-------PEELTYLIEA 732
PPP PA+PS PE+L L +A
Sbjct: 389 KSKKPPPVPALPSKLPTFGAPEQLVDLKQA 418
>gi|194306623 immunoglobulin superfamily containing leucine-rich
repeat 2 [Homo sapiens]
Length = 745
Score = 30.8 bits (68), Expect = 8.4
Identities = 34/111 (30%), Positives = 46/111 (41%), Gaps = 19/111 (17%)
Query: 302 LPCVGTPAEQALEKALAI--LTLRSALPGVVHCLQEVLKDYYTLVDRVPT-LLQHLASMD 358
LPC + E L LR+ L V+HC+ D PT LQ +
Sbjct: 228 LPCAPPSVHLSAEPPLEAPGTPLRAGLAFVLHCI----------ADGHPTPRLQWQLQIP 277
Query: 359 FSTVVSEEDLVTKLNAGLQA----ASEDPRLLVR--AIGPTETPSWPAPDA 403
TVV E +++ + G+ A D LL + A PT P+WPAP A
Sbjct: 278 GGTVVLEPPVLSGEDDGVGAEEGEGEGDGDLLTQTQAQTPTPAPAWPAPPA 328
>gi|194306621 immunoglobulin superfamily containing leucine-rich
repeat 2 [Homo sapiens]
Length = 745
Score = 30.8 bits (68), Expect = 8.4
Identities = 34/111 (30%), Positives = 46/111 (41%), Gaps = 19/111 (17%)
Query: 302 LPCVGTPAEQALEKALAI--LTLRSALPGVVHCLQEVLKDYYTLVDRVPT-LLQHLASMD 358
LPC + E L LR+ L V+HC+ D PT LQ +
Sbjct: 228 LPCAPPSVHLSAEPPLEAPGTPLRAGLAFVLHCI----------ADGHPTPRLQWQLQIP 277
Query: 359 FSTVVSEEDLVTKLNAGLQA----ASEDPRLLVR--AIGPTETPSWPAPDA 403
TVV E +++ + G+ A D LL + A PT P+WPAP A
Sbjct: 278 GGTVVLEPPVLSGEDDGVGAEEGEGEGDGDLLTQTQAQTPTPAPAWPAPPA 328
>gi|39930401 immunoglobulin superfamily containing leucine-rich
repeat 2 [Homo sapiens]
Length = 745
Score = 30.8 bits (68), Expect = 8.4
Identities = 34/111 (30%), Positives = 46/111 (41%), Gaps = 19/111 (17%)
Query: 302 LPCVGTPAEQALEKALAI--LTLRSALPGVVHCLQEVLKDYYTLVDRVPT-LLQHLASMD 358
LPC + E L LR+ L V+HC+ D PT LQ +
Sbjct: 228 LPCAPPSVHLSAEPPLEAPGTPLRAGLAFVLHCI----------ADGHPTPRLQWQLQIP 277
Query: 359 FSTVVSEEDLVTKLNAGLQA----ASEDPRLLVR--AIGPTETPSWPAPDA 403
TVV E +++ + G+ A D LL + A PT P+WPAP A
Sbjct: 278 GGTVVLEPPVLSGEDDGVGAEEGEGEGDGDLLTQTQAQTPTPAPAWPAPPA 328
>gi|194306618 immunoglobulin superfamily containing leucine-rich
repeat 2 [Homo sapiens]
Length = 745
Score = 30.8 bits (68), Expect = 8.4
Identities = 34/111 (30%), Positives = 46/111 (41%), Gaps = 19/111 (17%)
Query: 302 LPCVGTPAEQALEKALAI--LTLRSALPGVVHCLQEVLKDYYTLVDRVPT-LLQHLASMD 358
LPC + E L LR+ L V+HC+ D PT LQ +
Sbjct: 228 LPCAPPSVHLSAEPPLEAPGTPLRAGLAFVLHCI----------ADGHPTPRLQWQLQIP 277
Query: 359 FSTVVSEEDLVTKLNAGLQA----ASEDPRLLVR--AIGPTETPSWPAPDA 403
TVV E +++ + G+ A D LL + A PT P+WPAP A
Sbjct: 278 GGTVVLEPPVLSGEDDGVGAEEGEGEGDGDLLTQTQAQTPTPAPAWPAPPA 328
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.134 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,581,018
Number of Sequences: 37866
Number of extensions: 2343455
Number of successful extensions: 10325
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 10150
Number of HSP's gapped (non-prelim): 154
length of query: 1247
length of database: 18,247,518
effective HSP length: 114
effective length of query: 1133
effective length of database: 13,930,794
effective search space: 15783589602
effective search space used: 15783589602
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 68 (30.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.