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Search of human proteins with 4504033
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4504033 glycosylphosphatidylinositol anchored molecule like
protein [Homo sapiens]
(158 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4504033 glycosylphosphatidylinositol anchored molecule like p... 331 2e-91
gi|237820711 lymphocyte antigen 6 complex, locus K isoform 1 [Ho... 55 2e-08
gi|11321575 lymphocyte antigen 6 complex, locus D [Homo sapiens] 40 6e-04
gi|29294645 Ly-6 neurotoxin-like protein 1 isoform c [Homo sapiens] 39 0.001
gi|29337283 Ly-6 neurotoxin-like protein 1 isoform c [Homo sapiens] 39 0.001
gi|29294641 Ly-6 neurotoxin-like protein 1 isoform c [Homo sapiens] 39 0.001
gi|5031995 prostate stem cell antigen preproprotein [Homo sapiens] 34 0.059
gi|40255210 LY6/PLAUR domain containing 6B [Homo sapiens] 34 0.059
gi|29337281 Ly-6 neurotoxin-like protein 1 isoform a [Homo sapiens] 33 0.13
gi|116812612 LY6/PLAUR domain containing 1 isoform a [Homo sapiens] 32 0.17
gi|237858797 lymphocyte antigen 6 complex, locus K isoform 3 [Ho... 31 0.38
gi|237858795 lymphocyte antigen 6 complex, locus K isoform 2 [Ho... 30 0.66
gi|223555935 dynein, axonemal, heavy polypeptide 14 isoform 1 [H... 29 1.5
gi|150456451 hypothetical protein LOC54914 [Homo sapiens] 29 1.5
gi|45387925 LY6/PLAUR domain containing 2 [Homo sapiens] 29 1.5
gi|13376874 lymphocyte antigen 6 complex G6C [Homo sapiens] 28 4.3
gi|53829379 plasminogen activator, urokinase receptor isoform 2 ... 27 7.3
gi|4505865 plasminogen activator, urokinase receptor isoform 1 p... 27 7.3
gi|195963412 transforming growth factor, beta receptor I isoform... 27 7.3
>gi|4504033 glycosylphosphatidylinositol anchored molecule like
protein [Homo sapiens]
Length = 158
Score = 331 bits (848), Expect = 2e-91
Identities = 158/158 (100%), Positives = 158/158 (100%)
Query: 1 MLLFALLLAMELPLVAASATMRAQWTYSLRCHDCAVINDFNCPNIRVCPYHIRRCMTISI 60
MLLFALLLAMELPLVAASATMRAQWTYSLRCHDCAVINDFNCPNIRVCPYHIRRCMTISI
Sbjct: 1 MLLFALLLAMELPLVAASATMRAQWTYSLRCHDCAVINDFNCPNIRVCPYHIRRCMTISI 60
Query: 61 RINSRELLVYKNCTNNCTFVYAAEQPPEAPGKIFKTNSFYWVCCCNSMVCNAGGPTNLER 120
RINSRELLVYKNCTNNCTFVYAAEQPPEAPGKIFKTNSFYWVCCCNSMVCNAGGPTNLER
Sbjct: 61 RINSRELLVYKNCTNNCTFVYAAEQPPEAPGKIFKTNSFYWVCCCNSMVCNAGGPTNLER 120
Query: 121 DMLPDEVTEEELPEGTVRLGVSKLLLSFASIIVSNILP 158
DMLPDEVTEEELPEGTVRLGVSKLLLSFASIIVSNILP
Sbjct: 121 DMLPDEVTEEELPEGTVRLGVSKLLLSFASIIVSNILP 158
>gi|237820711 lymphocyte antigen 6 complex, locus K isoform 1 [Homo
sapiens]
Length = 165
Score = 55.1 bits (131), Expect = 2e-08
Identities = 39/130 (30%), Positives = 56/130 (43%), Gaps = 19/130 (14%)
Query: 1 MLLFALLLAMELPLVAASATMRA------------QWTYSLRCHDCAVINDFNCPNIRVC 48
M L ALLL + LP V A + A + + CH C N F C N R C
Sbjct: 1 MALLALLLVVALPRVWTDANLTARQRDPEDSQRTDEGDNRVWCHVCERENTFECQNPRRC 60
Query: 49 PYHIRRCMTISIRINSRELLVYKNCTNNCTFVYAAEQPPEAPGKIF---KTNSFYWVCCC 105
+ C+ +++I R +V K C+ C AA + P+ K F + F+++ CC
Sbjct: 61 KWTEPYCVIAAVKIFPRFFMVAKQCSAGC----AAMERPKPEEKRFLLEEPMPFFYLKCC 116
Query: 106 NSMVCNAGGP 115
CN GP
Sbjct: 117 KIRYCNLEGP 126
>gi|11321575 lymphocyte antigen 6 complex, locus D [Homo sapiens]
Length = 128
Score = 40.4 bits (93), Expect = 6e-04
Identities = 29/98 (29%), Positives = 42/98 (42%), Gaps = 10/98 (10%)
Query: 14 LVAASATMRAQWTYSLRCHDCAVINDFNCPNIRVCPYHIRRCMTISIRINSRELLVYKNC 73
L+ A+ + +LRCH C + NC + VCP R C T + R LV K+C
Sbjct: 6 LLLAALAVATGPALTLRCHVCT--SSSNCKHSVVCPASSRFCKTTNTVEPLRGNLVKKDC 63
Query: 74 TNNCTFVYAAEQPPEAPGKIFKTNSFYWVCCCNSMVCN 111
+CT Y + G++ S CC +CN
Sbjct: 64 AESCTPSYTLQ------GQVSSGTSS--TQCCQEDLCN 93
>gi|29294645 Ly-6 neurotoxin-like protein 1 isoform c [Homo sapiens]
Length = 116
Score = 39.3 bits (90), Expect = 0.001
Identities = 34/114 (29%), Positives = 42/114 (36%), Gaps = 22/114 (19%)
Query: 1 MLLFALLLAMELPLVAASATMRAQWTYSLRCHDCAVINDFNCPNIRVCPYHIRRCMTISI 60
+L L++ M LPL A L CH CA D NC N CP + CMT
Sbjct: 4 LLTLILVVLMGLPLAQA-----------LDCHVCAYNGD-NCFNPMRCPAMVAYCMTTRT 51
Query: 61 RINSRELLVYKNCTNNCTFVYAAEQPPEAPGKIFKTNSFYWVCCCNSMVCNAGG 114
+ V K+C C E + K T S CC +CN G
Sbjct: 52 YYTPTRMKVSKSCVPRC-----FETVYDGYSKHASTTS-----CCQYDLCNGTG 95
>gi|29337283 Ly-6 neurotoxin-like protein 1 isoform c [Homo sapiens]
Length = 116
Score = 39.3 bits (90), Expect = 0.001
Identities = 34/114 (29%), Positives = 42/114 (36%), Gaps = 22/114 (19%)
Query: 1 MLLFALLLAMELPLVAASATMRAQWTYSLRCHDCAVINDFNCPNIRVCPYHIRRCMTISI 60
+L L++ M LPL A L CH CA D NC N CP + CMT
Sbjct: 4 LLTLILVVLMGLPLAQA-----------LDCHVCAYNGD-NCFNPMRCPAMVAYCMTTRT 51
Query: 61 RINSRELLVYKNCTNNCTFVYAAEQPPEAPGKIFKTNSFYWVCCCNSMVCNAGG 114
+ V K+C C E + K T S CC +CN G
Sbjct: 52 YYTPTRMKVSKSCVPRC-----FETVYDGYSKHASTTS-----CCQYDLCNGTG 95
>gi|29294641 Ly-6 neurotoxin-like protein 1 isoform c [Homo sapiens]
Length = 116
Score = 39.3 bits (90), Expect = 0.001
Identities = 34/114 (29%), Positives = 42/114 (36%), Gaps = 22/114 (19%)
Query: 1 MLLFALLLAMELPLVAASATMRAQWTYSLRCHDCAVINDFNCPNIRVCPYHIRRCMTISI 60
+L L++ M LPL A L CH CA D NC N CP + CMT
Sbjct: 4 LLTLILVVLMGLPLAQA-----------LDCHVCAYNGD-NCFNPMRCPAMVAYCMTTRT 51
Query: 61 RINSRELLVYKNCTNNCTFVYAAEQPPEAPGKIFKTNSFYWVCCCNSMVCNAGG 114
+ V K+C C E + K T S CC +CN G
Sbjct: 52 YYTPTRMKVSKSCVPRC-----FETVYDGYSKHASTTS-----CCQYDLCNGTG 95
>gi|5031995 prostate stem cell antigen preproprotein [Homo sapiens]
Length = 123
Score = 33.9 bits (76), Expect = 0.059
Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 12/93 (12%)
Query: 28 SLRCHDC-AVINDFNCPNIRVCPYHIRRCMTISIRINSRELLVYKNCTNNCTFVYAAEQP 86
+L C+ C A +++ +C + C +C T IR ++ K C+ NC
Sbjct: 20 ALLCYSCKAQVSNEDCLQVENCTQLGEQCWTARIRAVGLLTVISKGCSLNCV-------D 72
Query: 87 PEAPGKIFKTNSFYWVCCCNSMVCNAGGPTNLE 119
+ K N + CC++ +CNA G L+
Sbjct: 73 DSQDYYVGKKN----ITCCDTDLCNASGAHALQ 101
>gi|40255210 LY6/PLAUR domain containing 6B [Homo sapiens]
Length = 207
Score = 33.9 bits (76), Expect = 0.059
Identities = 27/99 (27%), Positives = 40/99 (40%), Gaps = 19/99 (19%)
Query: 28 SLRCHDCAVIND-FNC---PNIRVCPYHIRRCMTIS-IRINSRELLVYKNCTNN--CTFV 80
S +C C D +NC + CP + + C+T+ + R + K C + C FV
Sbjct: 83 SFKCFTCENAGDNYNCNRWAEDKWCPQNTQYCLTVHHFTSHGRSTSITKKCASRSECHFV 142
Query: 81 YAAEQPPEAPGKIFKTNSFYWVC--CCNSMVCNAGGPTN 117
G +S + C CC M+CN PTN
Sbjct: 143 ----------GCHHSRDSEHTECRSCCEGMICNVELPTN 171
>gi|29337281 Ly-6 neurotoxin-like protein 1 isoform a [Homo
sapiens]
Length = 131
Score = 32.7 bits (73), Expect = 0.13
Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 14/74 (18%)
Query: 1 MLLFALLLAMELPLVAASATMRAQWTYSLRCHDCAVINDFNCPNIRVCPYHIRRCMTISI 60
+L L++ M LPL A L CH CA D NC N CP + CMT
Sbjct: 4 LLTLILVVLMGLPLAQA-----------LDCHVCAYNGD-NCFNPMRCPAMVAYCMT--T 49
Query: 61 RINSRELLVYKNCT 74
R ++ E + CT
Sbjct: 50 RTSAAEAIWCHQCT 63
>gi|116812612 LY6/PLAUR domain containing 1 isoform a [Homo sapiens]
Length = 141
Score = 32.3 bits (72), Expect = 0.17
Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 7/89 (7%)
Query: 30 RCHDCAVINDFNCPNIRV-CPYHIRRCMTISIRINSRELLVYKNCTNN--CTFVYAAEQP 86
+C + + ND + P V C +++ + S ++ K+C ++ C A Q
Sbjct: 27 QCEEFQLNNDCSSPEFIVNCTVNVQDMCQKEVMEQSAGIMYRKSCASSAACLIASAGYQS 86
Query: 87 PEAPGKIFKTNSFYWVCCCNSMVCNAGGP 115
+PGK+ + + CCN+ +CN P
Sbjct: 87 FCSPGKL----NSVCISCCNTPLCNGPRP 111
>gi|237858797 lymphocyte antigen 6 complex, locus K isoform 3
[Homo sapiens]
Length = 105
Score = 31.2 bits (69), Expect = 0.38
Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 12/74 (16%)
Query: 1 MLLFALLLAMELPLVAASATMRA------------QWTYSLRCHDCAVINDFNCPNIRVC 48
M L ALLL + LP V A + A + + CH C N F C N R C
Sbjct: 1 MALLALLLVVALPRVWTDANLTARQRDPEDSQRTDEGDNRVWCHVCERENTFECQNPRRC 60
Query: 49 PYHIRRCMTISIRI 62
+ C+ ++ +
Sbjct: 61 KWTEPYCVIAAVTV 74
>gi|237858795 lymphocyte antigen 6 complex, locus K isoform 2
[Homo sapiens]
Length = 120
Score = 30.4 bits (67), Expect = 0.66
Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 12/72 (16%)
Query: 1 MLLFALLLAMELPLVAASATMRA------------QWTYSLRCHDCAVINDFNCPNIRVC 48
M L ALLL + LP V A + A + + CH C N F C N R C
Sbjct: 1 MALLALLLVVALPRVWTDANLTARQRDPEDSQRTDEGDNRVWCHVCERENTFECQNPRRC 60
Query: 49 PYHIRRCMTISI 60
+ C+ ++
Sbjct: 61 KWTEPYCVIAAV 72
>gi|223555935 dynein, axonemal, heavy polypeptide 14 isoform 1 [Homo
sapiens]
Length = 4515
Score = 29.3 bits (64), Expect = 1.5
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 8/44 (18%)
Query: 14 LVAASATMRAQWTYSLRCHD--------CAVINDFNCPNIRVCP 49
L+ + T QW + CH C ++ FN PN+ + P
Sbjct: 3870 LILKALTKTQQWVFLQNCHLATSFMPRLCTIVESFNSPNVTIDP 3913
>gi|150456451 hypothetical protein LOC54914 [Homo sapiens]
Length = 1801
Score = 29.3 bits (64), Expect = 1.5
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 19/74 (25%)
Query: 81 YAAEQPPEAPGKIFKTNSFYWVCCCNSMVCNAGGPTNLERDMLPDEVTEEELPEGTVRLG 140
+ E+P E K K+ ++ WV RDML DE+T+ E V G
Sbjct: 918 HGKEEPEEVQYK--KSTAWLWV-----------------RDMLTDEITKAAAKESPVVKG 958
Query: 141 VSKLLLSFASIIVS 154
+ L LS +++VS
Sbjct: 959 NALLALSSLAVVVS 972
>gi|45387925 LY6/PLAUR domain containing 2 [Homo sapiens]
Length = 125
Score = 29.3 bits (64), Expect = 1.5
Identities = 27/112 (24%), Positives = 41/112 (36%), Gaps = 23/112 (20%)
Query: 12 LPLVAASATMRAQWTYSLRCHDCAVINDFN-CPNIRVCPYHIRRCMTISIRINSRELL-- 68
L L+A + +LRC+ C + C I C + C T + SRE++
Sbjct: 6 LALLALVLAACGELAPALRCYVCPEPTGVSDCVTIATCTTNETMCKTT---LYSREIVYP 62
Query: 69 ------VYKNCTNNCTFVYAAEQPPEAPGKIFKTNSFYWVCCCNSMVCNAGG 114
V K+C + C P + V CCN+ +CN G
Sbjct: 63 FQGDSTVTKSCASKCK-----------PSDVDGIGQTLPVSCCNTELCNVDG 103
>gi|13376874 lymphocyte antigen 6 complex G6C [Homo sapiens]
Length = 125
Score = 27.7 bits (60), Expect = 4.3
Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 6/88 (6%)
Query: 29 LRCHDCAVINDFNCPNIRVCPYHI-RRCMTISIRINSRELLVYKNCTNNCTFVYAAEQPP 87
+RCH C + C + + C ++C+T + ++ V+ N E
Sbjct: 20 IRCHSCYKVPVLGCVDRQSCRLEPGQQCLTTHAYLG--KMWVFSNLRCGTPEEPCQEAFN 77
Query: 88 EAPGKIFKTNSFYWVCCCNSMVCNAGGP 115
+ K+ T Y CCN CN+ GP
Sbjct: 78 QTNRKLGLT---YNTTCCNKDNCNSAGP 102
>gi|53829379 plasminogen activator, urokinase receptor isoform 2
precursor [Homo sapiens]
Length = 281
Score = 26.9 bits (58), Expect = 7.3
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 87 PEAPGK--IFKTNSFYWVCCCNSMVCNAGGPTNLE 119
P PG ++F+++ CCN+ CN G LE
Sbjct: 173 PGCPGSNGFHNNDTFHFLKCCNTTKCNEGPILELE 207
>gi|4505865 plasminogen activator, urokinase receptor isoform 1
precursor [Homo sapiens]
Length = 335
Score = 26.9 bits (58), Expect = 7.3
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 87 PEAPGK--IFKTNSFYWVCCCNSMVCNAGGPTNLE 119
P PG ++F+++ CCN+ CN G LE
Sbjct: 173 PGCPGSNGFHNNDTFHFLKCCNTTKCNEGPILELE 207
>gi|195963412 transforming growth factor, beta receptor I isoform 2
precursor [Homo sapiens]
Length = 426
Score = 26.9 bits (58), Expect = 7.3
Identities = 31/136 (22%), Positives = 48/136 (35%), Gaps = 17/136 (12%)
Query: 6 LLLAMELPLVAASATMRAQWTYSLRCHDCAVINDFNCPNIRVCPYHIRRCMTISIRINSR 65
LLL + AA+A + CH C N F C +C +S+ +
Sbjct: 13 LLLVLAAAAAAAAALLPGATALQCFCHLCTKDN-FTCVTDGLC--------FVSVTETTD 63
Query: 66 ELLVYKNCTNNCTFVYAAEQPPEAPGKIFKTNSFYWVCCCNSMVCN------AGGPTNLE 119
+++ C + AP KT S CCN CN G P ++
Sbjct: 64 KVIHNSMCIAEIDLIPRDRPFVCAPSS--KTGSVTTTYCCNQDHCNKIELPTTGLPLLVQ 121
Query: 120 RDMLPDEVTEEELPEG 135
R + V +E + +G
Sbjct: 122 RTIARTIVLQESIGKG 137
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.326 0.137 0.443
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,153,195
Number of Sequences: 37866
Number of extensions: 261714
Number of successful extensions: 702
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 692
Number of HSP's gapped (non-prelim): 19
length of query: 158
length of database: 18,247,518
effective HSP length: 94
effective length of query: 64
effective length of database: 14,688,114
effective search space: 940039296
effective search space used: 940039296
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.