Search of human proteins with 4502677

Search of human proteins with 4502677

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4502677 CD58 molecule isoform 1 [Homo sapiens]
         (250 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4502677 CD58 molecule isoform 1 [Homo sapiens]                     515   e-146
gi|221316575 CD58 molecule isoform 2 [Homo sapiens]                   509   e-144
gi|21361571 CD48 molecule [Homo sapiens]                               44   1e-04
gi|55925578 lymphocyte antigen 9 isoform a [Homo sapiens]              39   0.004
gi|58743369 hypothetical protein LOC139231 [Homo sapiens]              37   0.021
gi|118572606 hemicentin 1 [Homo sapiens]                               33   0.18 
gi|4885123 CD80 antigen precursor [Homo sapiens]                       33   0.23 
gi|4502687 CD84 molecule [Homo sapiens]                                33   0.23 
gi|28373117 contactin 1 isoform 1 precursor [Homo sapiens]             32   0.68 
gi|28373119 contactin 1 isoform 2 precursor [Homo sapiens]             32   0.68 
gi|7657361 contactin 6 [Homo sapiens]                                  31   1.2  
gi|108773787 retinoblastoma 1 [Homo sapiens]                           30   2.0  
gi|7657359 contactin 5 isoform long [Homo sapiens]                     29   4.4  
gi|28373129 contactin 5 isoform short [Homo sapiens]                   29   4.4  
gi|242332527 hypothetical protein LOC65250 [Homo sapiens]              28   5.8  
gi|57232746 nuclear receptor interacting protein 1 [Homo sapiens]      28   5.8  
gi|26080431 ATPase family, AAA domain containing 5 [Homo sapiens]      28   5.8  
gi|148719671 G-protein coupled receptor 116 [Homo sapiens]             28   9.8  
gi|148719673 G-protein coupled receptor 116 [Homo sapiens]             28   9.8  

>gi|4502677 CD58 molecule isoform 1 [Homo sapiens]
          Length = 250

 Score =  515 bits (1326), Expect = e-146
 Identities = 250/250 (100%), Positives = 250/250 (100%)

Query: 1   MVAGSDAGRALGVLSVVCLLHCFGFISCFSQQIYGVVYGNVTFHVPSNVPLKEVLWKKQK 60
           MVAGSDAGRALGVLSVVCLLHCFGFISCFSQQIYGVVYGNVTFHVPSNVPLKEVLWKKQK
Sbjct: 1   MVAGSDAGRALGVLSVVCLLHCFGFISCFSQQIYGVVYGNVTFHVPSNVPLKEVLWKKQK 60

Query: 61  DKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNITDTMKFFLYV 120
           DKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNITDTMKFFLYV
Sbjct: 61  DKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNITDTMKFFLYV 120

Query: 121 LESLPSPTLTCALTNGSIEVQCMIPEHYNSHRGLIMYSWDCPMEQCKRNSTSIYFKMEND 180
           LESLPSPTLTCALTNGSIEVQCMIPEHYNSHRGLIMYSWDCPMEQCKRNSTSIYFKMEND
Sbjct: 121 LESLPSPTLTCALTNGSIEVQCMIPEHYNSHRGLIMYSWDCPMEQCKRNSTSIYFKMEND 180

Query: 181 LPQKIQCTLSNPLFNTTSSIILTTCIPSSGHSRHRYALIPIPLAVITTCIVLYMNGILKC 240
           LPQKIQCTLSNPLFNTTSSIILTTCIPSSGHSRHRYALIPIPLAVITTCIVLYMNGILKC
Sbjct: 181 LPQKIQCTLSNPLFNTTSSIILTTCIPSSGHSRHRYALIPIPLAVITTCIVLYMNGILKC 240

Query: 241 DRKPDRTNSN 250
           DRKPDRTNSN
Sbjct: 241 DRKPDRTNSN 250


>gi|221316575 CD58 molecule isoform 2 [Homo sapiens]
          Length = 248

 Score =  509 bits (1310), Expect = e-144
 Identities = 247/247 (100%), Positives = 247/247 (100%)

Query: 1   MVAGSDAGRALGVLSVVCLLHCFGFISCFSQQIYGVVYGNVTFHVPSNVPLKEVLWKKQK 60
           MVAGSDAGRALGVLSVVCLLHCFGFISCFSQQIYGVVYGNVTFHVPSNVPLKEVLWKKQK
Sbjct: 1   MVAGSDAGRALGVLSVVCLLHCFGFISCFSQQIYGVVYGNVTFHVPSNVPLKEVLWKKQK 60

Query: 61  DKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNITDTMKFFLYV 120
           DKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNITDTMKFFLYV
Sbjct: 61  DKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNITDTMKFFLYV 120

Query: 121 LESLPSPTLTCALTNGSIEVQCMIPEHYNSHRGLIMYSWDCPMEQCKRNSTSIYFKMEND 180
           LESLPSPTLTCALTNGSIEVQCMIPEHYNSHRGLIMYSWDCPMEQCKRNSTSIYFKMEND
Sbjct: 121 LESLPSPTLTCALTNGSIEVQCMIPEHYNSHRGLIMYSWDCPMEQCKRNSTSIYFKMEND 180

Query: 181 LPQKIQCTLSNPLFNTTSSIILTTCIPSSGHSRHRYALIPIPLAVITTCIVLYMNGILKC 240
           LPQKIQCTLSNPLFNTTSSIILTTCIPSSGHSRHRYALIPIPLAVITTCIVLYMNGILKC
Sbjct: 181 LPQKIQCTLSNPLFNTTSSIILTTCIPSSGHSRHRYALIPIPLAVITTCIVLYMNGILKC 240

Query: 241 DRKPDRT 247
           DRKPDRT
Sbjct: 241 DRKPDRT 247


>gi|21361571 CD48 molecule [Homo sapiens]
          Length = 243

 Score = 44.3 bits (103), Expect = 1e-04
 Identities = 45/179 (25%), Positives = 78/179 (43%), Gaps = 21/179 (11%)

Query: 40  NVTFHVPSNVP--LKEVLWKKQKD-KVAELENSEFRAFSS-FKNRVYLDTVSGSLTIYNL 95
           NVT ++  ++P   K++ W    D K+ E ++ + + F S FK RV LD  SG+L I  +
Sbjct: 40  NVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGALYISKV 99

Query: 96  TSSDEDEYEMESPNIT---DTMKFFLYVLESLPSPTLTCAL-----TNGSIEVQCMIPEH 147
              D   Y M     T      K  L VL+ +P P +          N  +++ C+IP  
Sbjct: 100 QKEDNSTYIMRVLKKTGNEQEWKIKLQVLDPVPKPVIKIEKIEDMDDNCYLKLSCVIPGE 159

Query: 148 YNSHRGLIMYSW---DCPMEQCKRNSTSIYFKMENDLPQKIQCTLSNPLFNTTSSIILT 203
                  + Y+W     P  +  +NS      M ++  +   C +SN + +   ++ L+
Sbjct: 160 ------SVNYTWYGDKRPFPKELQNSVLETTLMPHNYSRCYTCQVSNSVSSKNGTVCLS 212


>gi|55925578 lymphocyte antigen 9 isoform a [Homo sapiens]
          Length = 655

 Score = 38.9 bits (89), Expect = 0.004
 Identities = 47/182 (25%), Positives = 76/182 (41%), Gaps = 19/182 (10%)

Query: 33  IYGVVYGNVTF--HVPSNVPLKEVLWKKQKDKVAELENSEFRAF--SSFKNRVYLDTVSG 88
           + G++ G+VT   ++  +  ++ V+W   K+ +A     E       S+  R+ +   S 
Sbjct: 55  VSGILGGSVTLPLNISVDTEIENVIWIGPKNALAFARPKENVTIMVKSYLGRLDITKWSY 114

Query: 89  SLTIYNLTSSDEDEYEME----SPNITDTMKFFLYVLESLPSPTLTCALTNGSIEVQCMI 144
           SL I NLT +D   Y+ +    +  +T   +F L+V E L  P +T      S    C I
Sbjct: 115 SLCISNLTLNDAGSYKAQINQRNFEVTTEEEFTLFVYEQLQEPQVTMKSVKVSENFSCNI 174

Query: 145 PE--HYNSHRGLIMYSWDCPME--QCKRNSTSIY----FKMENDLPQKIQCTLSNPLFNT 196
                       ++YSW  P E    + N  SI        + DLP    CT  NP+   
Sbjct: 175 TLMCSVKGAEKSVLYSW-TPREPHASESNGGSILTVSRTPCDPDLP--YICTAQNPVSQR 231

Query: 197 TS 198
           +S
Sbjct: 232 SS 233



 Score = 38.5 bits (88), Expect = 0.006
 Identities = 47/226 (20%), Positives = 94/226 (41%), Gaps = 32/226 (14%)

Query: 31  QQIYGVVYGNVTFHV--PSNVPLKEVLW-------KKQKDKVAELENSEFRAFSSFKNRV 81
           + + GV+   VT  +  P+    ++V+W        K++++ A  +    ++   +KNRV
Sbjct: 255 ETVVGVLGEPVTLPLALPACRDTEKVVWLFNTSIISKEREEAATADPL-IKSRDPYKNRV 313

Query: 82  YLDTVSGSLTIYNLTSSDEDEYE----MESPNITDTMKFFLYVLESLPSPTLTCALTNGS 137
           ++ +   SL I  L   D   Y      E+ ++T      L +   L  P +T +L +  
Sbjct: 314 WVSSQDCSLKISQLKIEDAGPYHAYVCSEASSVTSMTHVTLLIYRRLRKPKITWSLRHSE 373

Query: 138 -----IEVQCMIPEHYNSHRGLIMYSW-----DCPMEQCKRNSTSIYFKMENDLPQKIQC 187
                I + C + +  N+    +MY+W     +  + Q + +    +   EN     + C
Sbjct: 374 DGICRISLTCSVEDGGNT----VMYTWTPLQKEAVVSQGESHLNVSWRSSENH--PNLTC 427

Query: 188 TLSNPLFNTTSSIILTTCIPSSGHSRHRYALIPIPLAVITTCIVLY 233
           T SNP+  ++   +       SG  R+    I + L V   C+ ++
Sbjct: 428 TASNPVSRSSHQFLSENI--CSGPERNTKLWIGLFLMVCLLCVGIF 471


>gi|58743369 hypothetical protein LOC139231 [Homo sapiens]
          Length = 388

 Score = 36.6 bits (83), Expect = 0.021
 Identities = 25/101 (24%), Positives = 41/101 (40%), Gaps = 13/101 (12%)

Query: 59  QKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNITDTMKFFL 118
           Q D  + L++ +F +F  F        VS S++ Y   S  E E+++   +I        
Sbjct: 94  QDDCYSLLDDQDFTSFDLFPEGSVCSDVSSSISTYWDWSDSEFEWQLPGSDIASGSDVLS 153

Query: 119 YVLESLPSPTLTCALTNGSIEVQCMIPEHYNSHRGLIMYSW 159
            V+ S+PS               C++P+  N HR L    W
Sbjct: 154 DVIPSIPSSP-------------CLLPKKKNKHRNLDELPW 181


>gi|118572606 hemicentin 1 [Homo sapiens]
          Length = 5635

 Score = 33.5 bits (75), Expect = 0.18
 Identities = 47/228 (20%), Positives = 84/228 (36%), Gaps = 37/228 (16%)

Query: 40   NVTFHVPSNVPLKE------VLWKKQKDKVAELENSEFRAFSSFKNRVY------LDTVS 87
            N+  HVP  +  KE      VL  +  +   E+E +       +K+ V       + TV+
Sbjct: 1352 NLKVHVPPVIKDKEQVTNVSVLLNQLTNLFCEVEGTPSPIIMWYKDNVQVTESSTIQTVN 1411

Query: 88   GS--LTIYNLTSSDEDEYEMESPNITDTMKFFLYVLESLPS-------PTLTCALTNGSI 138
                L ++  T  D   Y  ++ NI  T + +  +   +P        P     + N  +
Sbjct: 1412 NGKILKLFRATPEDAGRYSCKAINIAGTSQKYFNIDVLVPPTIIGTNFPNEVSVVLNRDV 1471

Query: 139  EVQCMI-----PEHYNSHRGLIMYSWDCPMEQCKRNSTSIYFKMENDLPQKIQCTLSNPL 193
             ++C +     P+ +    G  ++  D  +E   R           +   + QCT+SN  
Sbjct: 1472 ALECQVKGTPFPDIHWFKDGKPLFLGDPNVELLDRGQVLHLKNARRNDKGRYQCTVSNAA 1531

Query: 194  FNTTSSIILTTCIPSSGHSRHRYALIPIPLAVITTCIVLYMNGILKCD 241
                  I LT  IP S           I    +TT I + +N ++K +
Sbjct: 1532 GKQAKDIKLTIYIPPS-----------IKGGNVTTDISVLINSLIKLE 1568


>gi|4885123 CD80 antigen precursor [Homo sapiens]
          Length = 288

 Score = 33.1 bits (74), Expect = 0.23
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 54  VLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSG-SLTIYNLTSSDEDEYE 104
           + W+K+K  V  + + +   +  +KNR   D  +  S+ I  L  SDE  YE
Sbjct: 64  IYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYE 115


>gi|4502687 CD84 molecule [Homo sapiens]
          Length = 328

 Score = 33.1 bits (74), Expect = 0.23
 Identities = 42/186 (22%), Positives = 76/186 (40%), Gaps = 26/186 (13%)

Query: 33  IYGVVYGNVTFHVPSNVP--LKEVLWKKQKDKVAELE--NSEFRAFSSFKNRVYLDTVSG 88
           + G++  +VTF V    P  +K + W   K  VA +   +SE     +  +R Y + +  
Sbjct: 29  VNGILGESVTFPVNIQEPRQVKIIAWTS-KTSVAYVTPGDSETAPVVTVTHRNYYERIHA 87

Query: 89  SLTIYNLTSSD---ED------EYEMESPNITDTMKFFLYVLESLPSPTLTCAL-----T 134
               YNL  SD   ED      +   ++   T T ++ L +   L  P +T +L     +
Sbjct: 88  LGPNYNLVISDLRMEDAGDYKADINTQADPYTTTKRYNLQIYRRLGKPKITQSLMASVNS 147

Query: 135 NGSIEVQCMIPEHYNSHRGLIMYSWDCPMEQCKRNSTSIYFKMENDLPQKIQCTLSNPLF 194
             ++ + C + +   +    + Y+W    E+    +    F+   D      CT  NP+ 
Sbjct: 148 TCNVTLTCSVEKEEKN----VTYNWSPLGEE---GNVLQIFQTPEDQELTYTCTAQNPVS 200

Query: 195 NTTSSI 200
           N + SI
Sbjct: 201 NNSDSI 206


>gi|28373117 contactin 1 isoform 1 precursor [Homo sapiens]
          Length = 1018

 Score = 31.6 bits (70), Expect = 0.68
 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 4/75 (5%)

Query: 69  SEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYE--MESPNITDTMKFFLYVLESLPS 126
           +EF  F +   R ++   +G+L I N+ +SD+  Y   + SP+IT ++  F   +  +P 
Sbjct: 175 NEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSITKSV--FSKFIPLIPI 232

Query: 127 PTLTCALTNGSIEVQ 141
           P  T       I VQ
Sbjct: 233 PERTTKPYPADIVVQ 247


>gi|28373119 contactin 1 isoform 2 precursor [Homo sapiens]
          Length = 1007

 Score = 31.6 bits (70), Expect = 0.68
 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 4/75 (5%)

Query: 69  SEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYE--MESPNITDTMKFFLYVLESLPS 126
           +EF  F +   R ++   +G+L I N+ +SD+  Y   + SP+IT ++  F   +  +P 
Sbjct: 164 NEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSITKSV--FSKFIPLIPI 221

Query: 127 PTLTCALTNGSIEVQ 141
           P  T       I VQ
Sbjct: 222 PERTTKPYPADIVVQ 236


>gi|7657361 contactin 6 [Homo sapiens]
          Length = 1028

 Score = 30.8 bits (68), Expect = 1.2
 Identities = 32/109 (29%), Positives = 46/109 (42%), Gaps = 18/109 (16%)

Query: 24  GFISCFSQQIYGVVYGNVTFHVPSNVP--LKEVLWKKQ-----KDKVAELENSEF-RAFS 75
           G   C ++  Y ++Y N    V ++ P   K  + KK       D V   + + F RA  
Sbjct: 382 GVYQCAAENKYQIIYANAELRVLASAPDFSKSPVKKKSFVQVGGDIVIGCKPNAFPRAAI 441

Query: 76  SFKN---------RVYLDTVSGSLTIYNLTSSDEDEYEMESPNITDTMK 115
           S+K          R++L    GSL IYN+T SD   Y   + N   T K
Sbjct: 442 SWKRGTETLRQSKRIFL-LEDGSLKIYNITRSDAGSYTCIATNQFGTAK 489


>gi|108773787 retinoblastoma 1 [Homo sapiens]
          Length = 928

 Score = 30.0 bits (66), Expect = 2.0
 Identities = 17/51 (33%), Positives = 28/51 (54%)

Query: 53  EVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEY 103
           EVL K+ +  + E++N  F+ F  F N + L T +G   + NL+   E+ Y
Sbjct: 275 EVLCKEHECNIDEVKNVYFKNFIPFMNSLGLVTSNGLPEVENLSKRYEEIY 325


>gi|7657359 contactin 5 isoform long [Homo sapiens]
          Length = 1100

 Score = 28.9 bits (63), Expect = 4.4
 Identities = 23/103 (22%), Positives = 41/103 (39%), Gaps = 16/103 (15%)

Query: 24  GFISCFSQQIYGVVYGNVTFHVPSNVPL-------KEVLWKKQKDKVAELE-NSEFRAFS 75
           G   C ++  YG +Y +    + ++ P        K ++  K ++ V E +     +   
Sbjct: 454 GMYQCLAENKYGAIYASAELKILASAPTFALNQLKKTIIVTKDQEVVIECKPQGSPKPTI 513

Query: 76  SFK--------NRVYLDTVSGSLTIYNLTSSDEDEYEMESPNI 110
           S+K        N+       GSL I N + SDE +Y     N+
Sbjct: 514 SWKKGDRAVRENKRIAILPDGSLRILNASKSDEGKYVCRGENV 556


>gi|28373129 contactin 5 isoform short [Homo sapiens]
          Length = 1026

 Score = 28.9 bits (63), Expect = 4.4
 Identities = 23/103 (22%), Positives = 41/103 (39%), Gaps = 16/103 (15%)

Query: 24  GFISCFSQQIYGVVYGNVTFHVPSNVPL-------KEVLWKKQKDKVAELE-NSEFRAFS 75
           G   C ++  YG +Y +    + ++ P        K ++  K ++ V E +     +   
Sbjct: 380 GMYQCLAENKYGAIYASAELKILASAPTFALNQLKKTIIVTKDQEVVIECKPQGSPKPTI 439

Query: 76  SFK--------NRVYLDTVSGSLTIYNLTSSDEDEYEMESPNI 110
           S+K        N+       GSL I N + SDE +Y     N+
Sbjct: 440 SWKKGDRAVRENKRIAILPDGSLRILNASKSDEGKYVCRGENV 482


>gi|242332527 hypothetical protein LOC65250 [Homo sapiens]
          Length = 3197

 Score = 28.5 bits (62), Expect = 5.8
 Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 5/81 (6%)

Query: 40   NVTFHVPSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSD 99
            N+  ++  + P  E+L     DK+  +++ EF +   FK  +   T+S S  +  LT  D
Sbjct: 2716 NIAENIEQDFPKPEML-DLHCDKIGPVDHIEFSSGPEFKKTLASKTISISEEVRFLTHMD 2774

Query: 100  E----DEYEMESPNITDTMKF 116
            E    D+ E   P  + T  +
Sbjct: 2775 EEDQSDKKETSEPEFSITENY 2795


>gi|57232746 nuclear receptor interacting protein 1 [Homo sapiens]
          Length = 1158

 Score = 28.5 bits (62), Expect = 5.8
 Identities = 10/28 (35%), Positives = 19/28 (67%)

Query: 95   LTSSDEDEYEMESPNITDTMKFFLYVLE 122
            +T ++++EYE +SP +T T     Y+L+
Sbjct: 1046 ITDAEKNEYEKDSPRLTKTNPILYYMLQ 1073


>gi|26080431 ATPase family, AAA domain containing 5 [Homo sapiens]
          Length = 1844

 Score = 28.5 bits (62), Expect = 5.8
 Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 9/91 (9%)

Query: 44   HVPSNVPLKEVLWKKQKDKVAELENSE-FRAFSSFKNR-VYLDTVSGSLTIYNLTSSDED 101
            H     PLK+   KKQK  +  L++S+ F     F ++ + L +VS S       + DE+
Sbjct: 1551 HSEREQPLKKSQKKKQKKTLVILDDSDLFDTDLDFPDQSISLSSVSSSSNAEESKTGDEE 1610

Query: 102  EYEMESPNITDTMKFFLYVLESLPSPTLTCA 132
                +  N  +T K       S+P P  T A
Sbjct: 1611 SKARDKGNNPETKK-------SIPCPPKTTA 1634


>gi|148719671 G-protein coupled receptor 116 [Homo sapiens]
          Length = 1346

 Score = 27.7 bits (60), Expect = 9.8
 Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 3/50 (6%)

Query: 54  VLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEY 103
           V W+ ++ ++    +S F  +++  N +   T    LTI+N+T  D  EY
Sbjct: 302 VSWRYEEQQLEIQNSSRFSIYTALFNNM---TSVSKLTIHNITPGDAGEY 348


>gi|148719673 G-protein coupled receptor 116 [Homo sapiens]
          Length = 1346

 Score = 27.7 bits (60), Expect = 9.8
 Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 3/50 (6%)

Query: 54  VLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEY 103
           V W+ ++ ++    +S F  +++  N +   T    LTI+N+T  D  EY
Sbjct: 302 VSWRYEEQQLEIQNSSRFSIYTALFNNM---TSVSKLTIHNITPGDAGEY 348


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.135    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,831,650
Number of Sequences: 37866
Number of extensions: 441810
Number of successful extensions: 1082
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1062
Number of HSP's gapped (non-prelim): 33
length of query: 250
length of database: 18,247,518
effective HSP length: 100
effective length of query: 150
effective length of database: 14,460,918
effective search space: 2169137700
effective search space used: 2169137700
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.