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Search of human proteins with 4502313
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4502313 ATPase, H+ transporting, lysosomal, V0 subunit c
[Homo sapiens]
(155 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4502313 ATPase, H+ transporting, lysosomal, V0 subunit c [Hom... 289 8e-79
gi|86792634 ATPase, H+ transporting, lysosomal 21kDa, V0 subunit... 92 1e-19
gi|4757816 ATPase, H+ transporting, lysosomal 21kDa, V0 subunit ... 92 1e-19
gi|85794840 ATP synthase, H+ transporting, mitochondrial F0 comp... 34 0.058
gi|4502301 ATP synthase, H+ transporting, mitochondrial F0 compl... 34 0.058
gi|50659074 ATP synthase, H+ transporting, mitochondrial F0 comp... 34 0.058
gi|50593533 ATP synthase, H+ transporting, mitochondrial F0 comp... 34 0.058
gi|50659069 ATP synthase, H+ transporting, mitochondrial F0 comp... 33 0.13
gi|4885081 ATP synthase, H+ transporting, mitochondrial F0 compl... 33 0.13
gi|38679890 solute carrier organic anion transporter family, mem... 31 0.49
gi|6912372 forkhead box D3 [Homo sapiens] 30 0.83
gi|7706113 protocadherin 12 precursor [Homo sapiens] 30 0.83
gi|21735483 transient receptor potential cation channel, subfami... 28 3.2
gi|4759238 transmembrane 4 superfamily member 3 [Homo sapiens] 28 4.1
gi|4506431 RAS p21 protein activator 1 isoform 1 [Homo sapiens] 28 4.1
gi|22749211 transmembrane and tetratricopeptide repeat containin... 28 4.1
gi|24497504 forkhead box A2 isoform 2 [Homo sapiens] 27 7.0
gi|211063479 major facilitator superfamily domain containing 2 i... 27 7.0
gi|42713696 major facilitator superfamily domain containing 2 is... 27 7.0
gi|194394143 forkhead box A2 isoform 1 [Homo sapiens] 27 7.0
>gi|4502313 ATPase, H+ transporting, lysosomal, V0 subunit c [Homo
sapiens]
Length = 155
Score = 289 bits (739), Expect = 8e-79
Identities = 155/155 (100%), Positives = 155/155 (100%)
Query: 1 MSESKSGPEYASFFAVMGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPEQIMKSIIPVV 60
MSESKSGPEYASFFAVMGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPEQIMKSIIPVV
Sbjct: 1 MSESKSGPEYASFFAVMGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPEQIMKSIIPVV 60
Query: 61 MAGIIAIYGLVVAVLIANSLNDDISLYKSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRG 120
MAGIIAIYGLVVAVLIANSLNDDISLYKSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRG
Sbjct: 61 MAGIIAIYGLVVAVLIANSLNDDISLYKSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRG 120
Query: 121 TAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK 155
TAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK
Sbjct: 121 TAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK 155
>gi|86792634 ATPase, H+ transporting, lysosomal 21kDa, V0 subunit b
isoform 2 [Homo sapiens]
Length = 158
Score = 92.4 bits (228), Expect = 1e-19
Identities = 49/149 (32%), Positives = 85/149 (57%), Gaps = 10/149 (6%)
Query: 17 MGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPEQIMKSIIPVVMAGIIAIYGLVVAVLI 76
+G A+ S +GAA+G +G+ I V P K+++ ++ +AIYG+++A++I
Sbjct: 5 LGIGLAISLSVVGAAWGIYITGSSIIGGGVKAPRIKTKNLVSIIFCEAVAIYGIIMAIVI 64
Query: 77 AN-----SLNDDISL-----YKSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPR 126
+N S D ++ + + GAGL+VGLS L G +GIVG AQ P
Sbjct: 65 SNMAEPFSATDPKAIGHRNYHAGYSMFGAGLTVGLSNLFCGVCVGIVGSGAALADAQNPS 124
Query: 127 LFVGMILILIFAEVLGLYGLIVALILSTK 155
LFV ++++ IF +GL+G+IVA++ +++
Sbjct: 125 LFVKILIVEIFGSAIGLFGVIVAILQTSR 153
Score = 31.6 bits (70), Expect = 0.29
Identities = 16/66 (24%), Positives = 30/66 (45%)
Query: 10 YASFFAVMGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPEQIMKSIIPVVMAGIIAIYG 69
Y + +++ GA + S L G+G A P +K +I + I ++G
Sbjct: 84 YHAGYSMFGAGLTVGLSNLFCGVCVGIVGSGAALADAQNPSLFVKILIVEIFGSAIGLFG 143
Query: 70 LVVAVL 75
++VA+L
Sbjct: 144 VIVAIL 149
>gi|4757816 ATPase, H+ transporting, lysosomal 21kDa, V0 subunit b
isoform 1 [Homo sapiens]
Length = 205
Score = 92.4 bits (228), Expect = 1e-19
Identities = 49/149 (32%), Positives = 85/149 (57%), Gaps = 10/149 (6%)
Query: 17 MGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPEQIMKSIIPVVMAGIIAIYGLVVAVLI 76
+G A+ S +GAA+G +G+ I V P K+++ ++ +AIYG+++A++I
Sbjct: 52 LGIGLAISLSVVGAAWGIYITGSSIIGGGVKAPRIKTKNLVSIIFCEAVAIYGIIMAIVI 111
Query: 77 AN-----SLNDDISL-----YKSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPR 126
+N S D ++ + + GAGL+VGLS L G +GIVG AQ P
Sbjct: 112 SNMAEPFSATDPKAIGHRNYHAGYSMFGAGLTVGLSNLFCGVCVGIVGSGAALADAQNPS 171
Query: 127 LFVGMILILIFAEVLGLYGLIVALILSTK 155
LFV ++++ IF +GL+G+IVA++ +++
Sbjct: 172 LFVKILIVEIFGSAIGLFGVIVAILQTSR 200
Score = 31.6 bits (70), Expect = 0.29
Identities = 16/66 (24%), Positives = 30/66 (45%)
Query: 10 YASFFAVMGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPEQIMKSIIPVVMAGIIAIYG 69
Y + +++ GA + S L G+G A P +K +I + I ++G
Sbjct: 131 YHAGYSMFGAGLTVGLSNLFCGVCVGIVGSGAALADAQNPSLFVKILIVEIFGSAIGLFG 190
Query: 70 LVVAVL 75
++VA+L
Sbjct: 191 VIVAIL 196
>gi|85794840 ATP synthase, H+ transporting, mitochondrial F0
complex, subunit C2 isoform b precursor [Homo sapiens]
Length = 198
Score = 33.9 bits (76), Expect = 0.058
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 7/79 (8%)
Query: 78 NSLNDDISLYKSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQP----RLFVGMIL 133
++++ DI F+ GA +VG++G AG IG V + + G A+ P +LF IL
Sbjct: 119 SAISRDIDTAAKFIGAGAA-TVGVAGSGAG--IGTVFGSLIIGYARNPSLKQQLFSYAIL 175
Query: 134 ILIFAEVLGLYGLIVALIL 152
+E +GL+ L+VA ++
Sbjct: 176 GFALSEAMGLFCLMVAFLI 194
>gi|4502301 ATP synthase, H+ transporting, mitochondrial F0 complex,
subunit C3 precursor [Homo sapiens]
Length = 142
Score = 33.9 bits (76), Expect = 0.058
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 7/79 (8%)
Query: 78 NSLNDDISLYKSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQP----RLFVGMIL 133
++++ DI F+ GA +VG++G AG IG V + + G A+ P +LF IL
Sbjct: 63 SAISRDIDTAAKFIGAGAA-TVGVAGSGAG--IGTVFGSLIIGYARNPSLKQQLFSYAIL 119
Query: 134 ILIFAEVLGLYGLIVALIL 152
+E +GL+ L+VA ++
Sbjct: 120 GFALSEAMGLFCLMVAFLI 138
>gi|50659074 ATP synthase, H+ transporting, mitochondrial F0
complex, subunit C3 precursor [Homo sapiens]
Length = 142
Score = 33.9 bits (76), Expect = 0.058
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 7/79 (8%)
Query: 78 NSLNDDISLYKSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQP----RLFVGMIL 133
++++ DI F+ GA +VG++G AG IG V + + G A+ P +LF IL
Sbjct: 63 SAISRDIDTAAKFIGAGAA-TVGVAGSGAG--IGTVFGSLIIGYARNPSLKQQLFSYAIL 119
Query: 134 ILIFAEVLGLYGLIVALIL 152
+E +GL+ L+VA ++
Sbjct: 120 GFALSEAMGLFCLMVAFLI 138
>gi|50593533 ATP synthase, H+ transporting, mitochondrial F0
complex, subunit C2 isoform a precursor [Homo sapiens]
Length = 157
Score = 33.9 bits (76), Expect = 0.058
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 7/79 (8%)
Query: 78 NSLNDDISLYKSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQP----RLFVGMIL 133
++++ DI F+ GA +VG++G AG IG V + + G A+ P +LF IL
Sbjct: 78 SAISRDIDTAAKFIGAGAA-TVGVAGSGAG--IGTVFGSLIIGYARNPSLKQQLFSYAIL 134
Query: 134 ILIFAEVLGLYGLIVALIL 152
+E +GL+ L+VA ++
Sbjct: 135 GFALSEAMGLFCLMVAFLI 153
>gi|50659069 ATP synthase, H+ transporting, mitochondrial F0
complex, subunit C1 precursor [Homo sapiens]
Length = 136
Score = 32.7 bits (73), Expect = 0.13
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 7/74 (9%)
Query: 83 DISLYKSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQP----RLFVGMILILIFA 138
DI F+ GA +VG++G AG IG V + + G A+ P +LF IL +
Sbjct: 62 DIDTAAKFIGAGAA-TVGVAGSGAG--IGTVFGSLIIGYARNPSLKQQLFSYAILGFALS 118
Query: 139 EVLGLYGLIVALIL 152
E +GL+ L+VA ++
Sbjct: 119 EAMGLFCLMVAFLI 132
>gi|4885081 ATP synthase, H+ transporting, mitochondrial F0 complex,
subunit C1 precursor [Homo sapiens]
Length = 136
Score = 32.7 bits (73), Expect = 0.13
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 7/74 (9%)
Query: 83 DISLYKSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQP----RLFVGMILILIFA 138
DI F+ GA +VG++G AG IG V + + G A+ P +LF IL +
Sbjct: 62 DIDTAAKFIGAGAA-TVGVAGSGAG--IGTVFGSLIIGYARNPSLKQQLFSYAILGFALS 118
Query: 139 EVLGLYGLIVALIL 152
E +GL+ L+VA ++
Sbjct: 119 EAMGLFCLMVAFLI 132
>gi|38679890 solute carrier organic anion transporter family, member
4C1 [Homo sapiens]
Length = 724
Score = 30.8 bits (68), Expect = 0.49
Identities = 28/114 (24%), Positives = 48/114 (42%), Gaps = 10/114 (8%)
Query: 8 PEYASFFAVMGASAAMVFSALGAAYGTAKSG--------TGIAAMSVMRPEQIMKSIIPV 59
P + +F A M A+VFS G K G T + S + + + V
Sbjct: 172 PRWLAFAAFMIGLGALVFSLPQFFSGEYKLGSLFEDTCVTTRNSTSCTSSTSSLSNYLYV 231
Query: 60 VMAG--IIAIYGLVVAVLIANSLNDDISLYKSFLQLGAGLSVGLSGLAAGFAIG 111
+ G ++ G + L L+D + +KS L +G G ++ + G A G+ +G
Sbjct: 232 FILGQLLLGAGGTPLYTLGTAFLDDSVPTHKSSLYIGTGYAMSILGPAIGYVLG 285
>gi|6912372 forkhead box D3 [Homo sapiens]
Length = 478
Score = 30.0 bits (66), Expect = 0.83
Identities = 36/126 (28%), Positives = 51/126 (40%), Gaps = 21/126 (16%)
Query: 2 SESKSGPEYASFFAVMGASAAMVFSALGA--AYGTAKSGTGIAAMSVMRPEQIMKSIIPV 59
SE + P ++ + G AA SA+GA A GT SG G A S +RP ++S
Sbjct: 370 SEPSARPSFSIENIIGGGPAAPGGSAVGAGVAGGTGGSGGGSTAQSFLRPPGTVQS---- 425
Query: 60 VMAGIIAIYGLVVAVLIANSLNDDISLYKSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVR 119
A L+A + +SL ++ + LSV LSG A A
Sbjct: 426 -------------AALMAT--HQPLSLSRTTATIAPILSVPLSGQFLQPAASAAAAAAAA 470
Query: 120 GTAQQP 125
A+ P
Sbjct: 471 AQAKWP 476
>gi|7706113 protocadherin 12 precursor [Homo sapiens]
Length = 1184
Score = 30.0 bits (66), Expect = 0.83
Identities = 14/37 (37%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 118 VRGTAQQP-RLFVGMILILIFAEVLGLYGLIVALILS 153
+R +A++P L + M+ ++ A +LG++GLI+AL +S
Sbjct: 702 LRDSARKPGALSMSMLTVICLAVLLGIFGLILALFMS 738
>gi|21735483 transient receptor potential cation channel, subfamily
V, member 3 [Homo sapiens]
Length = 790
Score = 28.1 bits (61), Expect = 3.2
Identities = 27/114 (23%), Positives = 54/114 (47%), Gaps = 13/114 (11%)
Query: 45 SVMRPEQIMKSIIPVVMAGIIAI--YGLVVAVLIANSLND--DISLYKSFLQLGAGLSVG 100
SVM + I+ ++ + I+ + +G+ +A LI D D S Y SF + +
Sbjct: 576 SVMIQKVILHDVLKFLFVYIVFLLGFGVALASLIEKCPKDNKDCSSYGSF----SDAVLE 631
Query: 101 LSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILST 154
L L G +GD ++ ++ P LF+ +++ + + L +++AL+ T
Sbjct: 632 LFKLTIG-----LGDLNIQQNSKYPILFLFLLITYVILTFVLLLNMLIALMGET 680
>gi|4759238 transmembrane 4 superfamily member 3 [Homo sapiens]
Length = 237
Score = 27.7 bits (60), Expect = 4.1
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
Query: 70 LVVAVLIANSLNDDISLYKSFLQLGAGLSVGLSGL-AAGFAIGIVGDAGVRGTAQQPR-- 126
L++A+ I +++D +G+ V + L A G I I+G G G ++ R
Sbjct: 25 LILALAIWVRVSNDSQAIFGSEDVGSSSYVAVDILIAVGAIIMILGFLGCCGAIKESRCM 84
Query: 127 ---LFVGMILILIFAEVLGLYGLI 147
F+G++LIL+ G+ G +
Sbjct: 85 LLLFFIGLLLILLLQVATGILGAV 108
>gi|4506431 RAS p21 protein activator 1 isoform 1 [Homo sapiens]
Length = 1047
Score = 27.7 bits (60), Expect = 4.1
Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 13/87 (14%)
Query: 34 TAKSGTGIAAMSVMRPEQIMKSIIPVVMAGIIAIYGLVVAVLIANSLNDDISLYKSFLQL 93
TA +G G AA + + IP + A Y +V +A +L
Sbjct: 15 TAGAGGGGAAAGSSAYPAVCRVKIPAALPVAAAPYPGLVETGVAGTL------------- 61
Query: 94 GAGLSVGLSGLAAGFAIGIVGDAGVRG 120
G G ++G L AG G +G AG+ G
Sbjct: 62 GGGAALGSEFLGAGSVAGALGGAGLTG 88
>gi|22749211 transmembrane and tetratricopeptide repeat containing 2
[Homo sapiens]
Length = 836
Score = 27.7 bits (60), Expect = 4.1
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 40 GIAAMSVMRPEQIMKSIIPVVMAGIIAIYGLVVAVLIANSLNDDISLYKSFLQLGAGLSV 99
G A+ V ++ +KS+I A +I YGL A+ + N+++ LY+S +++ +
Sbjct: 438 GARALYVKVQKRFLKSLIFYATATLIVFYGLKTAIRNGDWQNEEM-LYRSGIKVNPAKAW 496
Query: 100 GLSG 103
G G
Sbjct: 497 GNLG 500
>gi|24497504 forkhead box A2 isoform 2 [Homo sapiens]
Length = 457
Score = 26.9 bits (58), Expect = 7.0
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 61 MAGIIAIYGLVVAVLIANSLNDDISLYKSFLQLGAGLSVGLSGLA--AGFAIGIVGDAGV 118
M G+ + A + + S N +GAG+S L+G++ AG G+ G AG
Sbjct: 37 MNGMNTYMSMSAAAMGSGSGNMSAGSMNMSSYVGAGMSPSLAGMSPGAGAMAGMGGSAGA 96
Query: 119 RGTA 122
G A
Sbjct: 97 AGVA 100
>gi|211063479 major facilitator superfamily domain containing 2
isoform 1 [Homo sapiens]
Length = 543
Score = 26.9 bits (58), Expect = 7.0
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 85 SLYKSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRL-FVGMILILIFAEVLGL 143
S Y F + +G+S+G+S L+ FA RG +Q R+ F +L+ + VL L
Sbjct: 442 SFYVFFTKFASGVSLGISTLSLDFA-----GYQTRGCSQPERVKFTLNMLVTMAPIVLIL 496
Query: 144 YGLIV 148
GL++
Sbjct: 497 LGLLL 501
>gi|42713696 major facilitator superfamily domain containing 2
isoform 2 [Homo sapiens]
Length = 530
Score = 26.9 bits (58), Expect = 7.0
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 85 SLYKSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRL-FVGMILILIFAEVLGL 143
S Y F + +G+S+G+S L+ FA RG +Q R+ F +L+ + VL L
Sbjct: 429 SFYVFFTKFASGVSLGISTLSLDFA-----GYQTRGCSQPERVKFTLNMLVTMAPIVLIL 483
Query: 144 YGLIV 148
GL++
Sbjct: 484 LGLLL 488
>gi|194394143 forkhead box A2 isoform 1 [Homo sapiens]
Length = 463
Score = 26.9 bits (58), Expect = 7.0
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 61 MAGIIAIYGLVVAVLIANSLNDDISLYKSFLQLGAGLSVGLSGLA--AGFAIGIVGDAGV 118
M G+ + A + + S N +GAG+S L+G++ AG G+ G AG
Sbjct: 43 MNGMNTYMSMSAAAMGSGSGNMSAGSMNMSSYVGAGMSPSLAGMSPGAGAMAGMGGSAGA 102
Query: 119 RGTA 122
G A
Sbjct: 103 AGVA 106
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.139 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,254,796
Number of Sequences: 37866
Number of extensions: 142352
Number of successful extensions: 479
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 464
Number of HSP's gapped (non-prelim): 23
length of query: 155
length of database: 18,247,518
effective HSP length: 93
effective length of query: 62
effective length of database: 14,725,980
effective search space: 913010760
effective search space used: 913010760
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.