Guide to the Human Genome
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Name: ATP1B3 Sequence: fasta or formatted (279aa) NCBI GI: 4502281
Description:

Na+/K+ -ATPase beta 3 subunit

Referenced in:

Sodium, Potassium, and Calcium Membrane ATPases

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4         15           2
 C cysteine            2.2          6           1
 D aspartate           5.0         14           2
 E glutamate           4.7         13           2
 F phenylalanine       6.1         17           1
 G glycine             6.8         19           1
 H histidine           0.7          2           1
 I isoleucine          4.7         13           2
 K lysine              8.2         23           2
 L leucine            10.4         29           2
 M methionine          2.9          8           1
 N asparagine          5.0         14           2
 P proline             7.2         20           1
 Q glutamine           3.9         11           1
 R arginine            2.9          8           1
 S serine              5.4         15           1
 T threonine           5.0         14           2
 V valine              7.2         20           1
 W tryptophan          1.1          3           1
 Y tyrosine            5.4         15           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Na+/K+ -ATPase beta 3 subunit 
ATP1B2                0.403   Na+/K+ -ATPase beta 2 subunit 
ATP1B4                0.294   ATPase, (Na+)/K+ transporting, beta 4 polypeptide i...
ATP4B                 0.278   hydrogen/potassium-exchanging ATPase 4B 
ATP1B4                0.276   ATPase, (Na+)/K+ transporting, beta 4 polypeptide iso...
ATP1B1                0.270   Na+/K+ -ATPase beta 1 subunit isoform a 
ATP1B1                0.269   Na+/K+ -ATPase beta 1 subunit isoform b 
PABPC1L               0.013   poly(A)-binding protein, cytoplasmic 1-like 
TAZ                   0.007   tafazzin isoform 4 
TAZ                   0.007   tafazzin isoform 3 
PABPC1                0.007   poly(A) binding protein, cytoplasmic 1 
ZSCAN29               0.007   zinc finger protein 690 
DSEL                  0.005   dermatan sulfate epimerase-like 
PABPC4                0.005   poly A binding protein, cytoplasmic 4 isoform 3 [Ho...
PABPC4                0.005   poly A binding protein, cytoplasmic 4 isoform 2 [Homo...
PABPC4                0.005   poly A binding protein, cytoplasmic 4 isoform 1 [Ho...
BAI3                  0.005   brain-specific angiogenesis inhibitor 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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