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Search of human proteins with 42794612
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|42794612 myeloma overexpressed [Homo sapiens]
(313 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|42794612 myeloma overexpressed [Homo sapiens] 646 0.0
gi|62988346 glutamate receptor, ionotropic, N-methyl-D-aspartate... 33 0.43
gi|189571583 intercellular adhesion molecule 5 precursor [Homo s... 31 1.2
gi|18087849 solute carrier family 35, member A4 [Homo sapiens] 31 1.2
gi|169169847 PREDICTED: hypothetical protein [Homo sapiens] 30 2.1
gi|51593088 neuroligin 3 [Homo sapiens] 30 2.8
gi|239758013 PREDICTED: hypothetical protein [Homo sapiens] 30 3.6
gi|240255430 hypothetical protein LOC100289135 [Homo sapiens] 29 6.2
gi|239754604 PREDICTED: similar to hCG1802898 [Homo sapiens] 29 6.2
gi|239749150 PREDICTED: hypothetical protein XP_002346928 [Homo ... 29 6.2
gi|113420249 PREDICTED: hypothetical protein LOC728071 [Homo sap... 29 6.2
gi|31317256 X-linked neuroligin 4 [Homo sapiens] 29 6.2
gi|24308209 X-linked neuroligin 4 [Homo sapiens] 29 6.2
gi|13124773 brain protein 16 [Homo sapiens] 29 6.2
gi|239755238 PREDICTED: hypothetical protein [Homo sapiens] 28 8.0
gi|239749762 PREDICTED: hypothetical protein XP_002347151 [Homo ... 28 8.0
gi|239744021 PREDICTED: hypothetical protein XP_002343019 [Homo ... 28 8.0
gi|95147555 microtubule-associated protein 1A [Homo sapiens] 28 8.0
gi|82546830 SEC8 protein isoform a [Homo sapiens] 28 8.0
gi|150378452 heparan-alpha-glucosaminide N-acetyltransferase [Ho... 28 8.0
>gi|42794612 myeloma overexpressed [Homo sapiens]
Length = 313
Score = 646 bits (1667), Expect = 0.0
Identities = 313/313 (100%), Positives = 313/313 (100%)
Query: 1 MALRICVTYTPALPIGLCTRCCLCLEQSPSWCHCLRGVSFLTFHLHQSVPLGDRDSLLMF 60
MALRICVTYTPALPIGLCTRCCLCLEQSPSWCHCLRGVSFLTFHLHQSVPLGDRDSLLMF
Sbjct: 1 MALRICVTYTPALPIGLCTRCCLCLEQSPSWCHCLRGVSFLTFHLHQSVPLGDRDSLLMF 60
Query: 61 TRQAGHFVEGSKAGRSRGRLCLSQALRVAVRGAFVSLWFAAGAGDRERNKGDKGAQTGAG 120
TRQAGHFVEGSKAGRSRGRLCLSQALRVAVRGAFVSLWFAAGAGDRERNKGDKGAQTGAG
Sbjct: 61 TRQAGHFVEGSKAGRSRGRLCLSQALRVAVRGAFVSLWFAAGAGDRERNKGDKGAQTGAG 120
Query: 121 LSQEAEDVDVSRARRVTDAPQGTLCGTGNRNSGSQSARVVGVAHLGEAFRVGVEQAISSC 180
LSQEAEDVDVSRARRVTDAPQGTLCGTGNRNSGSQSARVVGVAHLGEAFRVGVEQAISSC
Sbjct: 121 LSQEAEDVDVSRARRVTDAPQGTLCGTGNRNSGSQSARVVGVAHLGEAFRVGVEQAISSC 180
Query: 181 PEEVHGRHGLSMEIMWARMDVALRSPGRGLLAGAGALCMTLAESSCPDYERGRRACLTLH 240
PEEVHGRHGLSMEIMWARMDVALRSPGRGLLAGAGALCMTLAESSCPDYERGRRACLTLH
Sbjct: 181 PEEVHGRHGLSMEIMWARMDVALRSPGRGLLAGAGALCMTLAESSCPDYERGRRACLTLH 240
Query: 241 RHPTPHCSTWGLPLRVAGSWLTVVTVEALGGWRMGVRRTGQVGPTMHPPPVSGASPLLLH 300
RHPTPHCSTWGLPLRVAGSWLTVVTVEALGGWRMGVRRTGQVGPTMHPPPVSGASPLLLH
Sbjct: 241 RHPTPHCSTWGLPLRVAGSWLTVVTVEALGGWRMGVRRTGQVGPTMHPPPVSGASPLLLH 300
Query: 301 HLLLLLLIIILTC 313
HLLLLLLIIILTC
Sbjct: 301 HLLLLLLIIILTC 313
>gi|62988346 glutamate receptor, ionotropic, N-methyl-D-aspartate 3B
[Homo sapiens]
Length = 1043
Score = 32.7 bits (73), Expect = 0.43
Identities = 53/179 (29%), Positives = 70/179 (39%), Gaps = 21/179 (11%)
Query: 129 DVSRARRVTDA-PQGT--LCGTGNRNSGSQSARVV-GVAHLGEAFRVGVEQAISSCPEEV 184
D++RARRV +A P G L GT +A + G+ LGE R +E AI + V
Sbjct: 241 DIARARRVLEAVPPGPHWLLGTPLPPKALPTAGLPPGLLALGEVARPPLEAAIHDIVQLV 300
Query: 185 HGRHGLSMEIMWARMDVALRSPGR-GLLAGAGA------LCMTLAESSCPDYERGRRACL 237
G + ++ R L +P G L AG L LA +S
Sbjct: 301 ARALGSAAQVQPKR--ALLPAPVNCGDLQPAGPESPGRFLARFLANTSFQGRTGPVWVTG 358
Query: 238 TLHRHPTPHCSTWGLPL--RVAGSWLTVVTVEALGGWRMGVRRTGQVGPTMHPPPVSGA 294
+ H + H W L R A +W TV G WR G G + PPP GA
Sbjct: 359 SSQVHMSRHFKVWSLRRDPRGAPAWATV------GSWRDGQLDLEPGGASARPPPPQGA 411
>gi|189571583 intercellular adhesion molecule 5 precursor [Homo
sapiens]
Length = 924
Score = 31.2 bits (69), Expect = 1.2
Identities = 36/155 (23%), Positives = 56/155 (36%), Gaps = 10/155 (6%)
Query: 120 GLSQEAEDVDVSRARRVTDAPQGTLCGTGNRNSGSQSARVVGVAHLGEAFRVGVEQAISS 179
G+ E + +RV+ GT G+ S V +G +R V + +S
Sbjct: 699 GVRCSREGIPWPEQQRVSREDAGTYHCVATNAHGTDSRTVT----VGVEYRPVVAELAAS 754
Query: 180 CPEEVHGRHGLSMEIM---WARMDVALRSPGRGLLAGAGALCMTLAESSCPDYERGRRAC 236
P V ++ W ++ R+P L G + TL+ + G C
Sbjct: 755 PPGGVRPGGNFTLTCRAEAWPPAQISWRAPPGALNIGLSSNNSTLSVAGAMGSHGGEYEC 814
Query: 237 LTLHRHPTPHCSTWGLPLRVAGSWLTVVTVEALGG 271
+ H H + +RVAG WL V A GG
Sbjct: 815 AATNAHGR-HARR--ITVRVAGPWLWVAVGGAAGG 846
>gi|18087849 solute carrier family 35, member A4 [Homo sapiens]
Length = 324
Score = 31.2 bits (69), Expect = 1.2
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 275 GVRRTGQVGPTMHPPPVSGASPLLLHHLLLLLLIIILTC 313
G++ G P+ PPP + ASP+ LH L LL++IL C
Sbjct: 160 GLQVPGNTLPS--PPPAAAASPMPLHITPLGLLLLILYC 196
>gi|169169847 PREDICTED: hypothetical protein [Homo sapiens]
Length = 295
Score = 30.4 bits (67), Expect = 2.1
Identities = 54/225 (24%), Positives = 79/225 (35%), Gaps = 32/225 (14%)
Query: 44 HLHQSVPLGDRDSLLMFTRQAGHFVEGSKAGRSRGRLCLSQA-------LRVAVRGAFVS 96
H+H + L +DS L +T S AG G+ + A L G V
Sbjct: 14 HVHWYLQLLWKDSPLRYTVPPKMQGAPSLAGEEEGKRGVGDAEVRHWGTLTSRASGMRVG 73
Query: 97 LWFAAG----AGDRERNKGDKGAQTGAGLSQEAEDVDVSRARRVTDAPQGTLCGTGNRNS 152
+W A G AG+R + + G+ +EA A +T A G G +
Sbjct: 74 IWAAGGGLAAAGERNSVRAVSFSSGRVGVREEAAGHLAVGAAGLTGAHADLAVGRGAEVT 133
Query: 153 GSQSARVVGVAHLGE--AFRVGVEQAISSCPE-EVHGRHGLSMEIMWARMDVALRSPGRG 209
RV GVA LG A +G + A ++ + E H R R+ R
Sbjct: 134 EEALVRVAGVA-LGAQLAQLLGADAAAAAAVQHEAHAR----------------RTARRW 176
Query: 210 LLAGAGALCMTLAESSCPDYERGRRACLTLHRHP-TPHCSTWGLP 253
L+ LA+ + G+R + H P P W P
Sbjct: 177 LVRAPARPAAVLADGRLQGGQGGQRRSVGAHALPGRPRVPPWQPP 221
>gi|51593088 neuroligin 3 [Homo sapiens]
Length = 828
Score = 30.0 bits (66), Expect = 2.8
Identities = 33/107 (30%), Positives = 49/107 (45%), Gaps = 9/107 (8%)
Query: 124 EAEDVDVSRARRVTDAPQGT--LCGTGNRNSGSQSARVVGVAHLGEAFRVGVEQAISSCP 181
E ED+ S A+ V G + GTGN GS A V + +RVGV +S+
Sbjct: 170 EDEDIRDSGAKPVMVYIHGGSYMEGTGNMIDGSILASYGNVIVITLNYRVGVLGFLSTGD 229
Query: 182 EEVHGRHGLSMEIM---WARMDVAL--RSPGRGLL--AGAGALCMTL 221
+ G +GL +I W ++A P R + +G GA C++L
Sbjct: 230 QAAKGNYGLLDQIQALRWVSENIAFFGGDPRRITVFGSGIGASCVSL 276
>gi|239758013 PREDICTED: hypothetical protein [Homo sapiens]
Length = 819
Score = 29.6 bits (65), Expect = 3.6
Identities = 26/95 (27%), Positives = 37/95 (38%), Gaps = 3/95 (3%)
Query: 71 SKAGRSRG---RLCLSQALRVAVRGAFVSLWFAAGAGDRERNKGDKGAQTGAGLSQEAED 127
S+ G+SRG + Q A+ GA AG + +G +G ++ G +
Sbjct: 261 SRVGKSRGGGDKKLRRQGQNAALAGAKRRGAATAGEKPAAKGRGGRGPKSLGGQNPRWGR 320
Query: 128 VDVSRARRVTDAPQGTLCGTGNRNSGSQSARVVGV 162
RR A + GT G Q A VVGV
Sbjct: 321 GGKKPRRRGQKATKAAAAGTKRGGGGQQKAAVVGV 355
>gi|240255430 hypothetical protein LOC100289135 [Homo sapiens]
Length = 215
Score = 28.9 bits (63), Expect = 6.2
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 253 PLRVAGSWLTVVTVEALGGWRMGVRRTGQVGPTMHPPPVSGA 294
P++ AGS T V G RR G +GP PP +GA
Sbjct: 134 PVQDAGSEATSVVARDPSQDLPGTRRDGTLGPRPQPPAAAGA 175
>gi|239754604 PREDICTED: similar to hCG1802898 [Homo sapiens]
Length = 229
Score = 28.9 bits (63), Expect = 6.2
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 253 PLRVAGSWLTVVTVEALGGWRMGVRRTGQVGPTMHPPPVSGA 294
P++ AGS T V G RR G +GP PP +GA
Sbjct: 148 PVQDAGSEATSVVARDPSQDLPGTRRDGTLGPRPQPPAAAGA 189
>gi|239749150 PREDICTED: hypothetical protein XP_002346928 [Homo
sapiens]
Length = 229
Score = 28.9 bits (63), Expect = 6.2
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 253 PLRVAGSWLTVVTVEALGGWRMGVRRTGQVGPTMHPPPVSGA 294
P++ AGS T V G RR G +GP PP +GA
Sbjct: 148 PVQDAGSEATSVVARDPSQDLPGTRRDGTLGPRPQPPAAAGA 189
>gi|113420249 PREDICTED: hypothetical protein LOC728071 [Homo
sapiens]
Length = 390
Score = 28.9 bits (63), Expect = 6.2
Identities = 24/60 (40%), Positives = 29/60 (48%), Gaps = 8/60 (13%)
Query: 206 PGRGLLAGAGAL---CMTLAESSCPDYERGRRACLTLHRHPTPH----CSTWGLPLRVAG 258
PGR LLAG AL M LA +S P + RA + L P H + GLP R+ G
Sbjct: 53 PGRALLAGQAALLQALMELAPASAPARD-AARALVNLAADPGLHETLLAADPGLPARLMG 111
>gi|31317256 X-linked neuroligin 4 [Homo sapiens]
Length = 816
Score = 28.9 bits (63), Expect = 6.2
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Query: 146 GTGNRNSGSQSARVVGVAHLGEAFRVGVEQAISSCPEEVHGRHGLSMEIM---WARMDVA 202
GTGN GS A V + +R+G+ +S+ + G +GL +I W +V
Sbjct: 180 GTGNMIDGSILASYGNVIVITINYRLGILGFLSTGDQAAKGNYGLLDQIQALRWIEENVG 239
Query: 203 L--RSPGRGLL--AGAGALCMTL 221
P R + +GAGA C++L
Sbjct: 240 AFGGDPKRVTIFGSGAGASCVSL 262
>gi|24308209 X-linked neuroligin 4 [Homo sapiens]
Length = 816
Score = 28.9 bits (63), Expect = 6.2
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Query: 146 GTGNRNSGSQSARVVGVAHLGEAFRVGVEQAISSCPEEVHGRHGLSMEIM---WARMDVA 202
GTGN GS A V + +R+G+ +S+ + G +GL +I W +V
Sbjct: 180 GTGNMIDGSILASYGNVIVITINYRLGILGFLSTGDQAAKGNYGLLDQIQALRWIEENVG 239
Query: 203 L--RSPGRGLL--AGAGALCMTL 221
P R + +GAGA C++L
Sbjct: 240 AFGGDPKRVTIFGSGAGASCVSL 262
>gi|13124773 brain protein 16 [Homo sapiens]
Length = 390
Score = 28.9 bits (63), Expect = 6.2
Identities = 24/60 (40%), Positives = 29/60 (48%), Gaps = 8/60 (13%)
Query: 206 PGRGLLAGAGAL---CMTLAESSCPDYERGRRACLTLHRHPTPH----CSTWGLPLRVAG 258
PGR LLAG AL M LA +S P + RA + L P H + GLP R+ G
Sbjct: 53 PGRALLAGQAALLQALMELAPASAPARD-AARALVNLAADPGLHETLLAADPGLPARLMG 111
>gi|239755238 PREDICTED: hypothetical protein [Homo sapiens]
Length = 142
Score = 28.5 bits (62), Expect = 8.0
Identities = 22/55 (40%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 247 CSTWGLPLR--VAGSWLTVVTVEALGGWRMGVRRTGQVGPTMHPPPVSGASPLLL 299
C+ G PL A WL V AL G G TGQ GP P SG+ L L
Sbjct: 62 CAFAGRPLIDVKASGWLRRSPVGALPGAGFGAHATGQRGPHGATPLFSGSLGLQL 116
>gi|239749762 PREDICTED: hypothetical protein XP_002347151 [Homo
sapiens]
Length = 142
Score = 28.5 bits (62), Expect = 8.0
Identities = 22/55 (40%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 247 CSTWGLPLR--VAGSWLTVVTVEALGGWRMGVRRTGQVGPTMHPPPVSGASPLLL 299
C+ G PL A WL V AL G G TGQ GP P SG+ L L
Sbjct: 62 CAFAGRPLIDVKASGWLRRSPVGALPGAGFGAHATGQRGPHGATPLFSGSLGLQL 116
>gi|239744021 PREDICTED: hypothetical protein XP_002343019 [Homo
sapiens]
Length = 142
Score = 28.5 bits (62), Expect = 8.0
Identities = 22/55 (40%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 247 CSTWGLPLR--VAGSWLTVVTVEALGGWRMGVRRTGQVGPTMHPPPVSGASPLLL 299
C+ G PL A WL V AL G G TGQ GP P SG+ L L
Sbjct: 62 CAFAGRPLIDVKASGWLRRSPVGALPGAGFGAHATGQRGPHGATPLFSGSLGLQL 116
>gi|95147555 microtubule-associated protein 1A [Homo sapiens]
Length = 2803
Score = 28.5 bits (62), Expect = 8.0
Identities = 25/80 (31%), Positives = 33/80 (41%), Gaps = 12/80 (15%)
Query: 224 SSCPDYERGRRACLTLHRHPTPHCSTWG-------LPLRVAGSWLTVVTVEALGGWRMGV 276
S+ P+ E G + C T P PH LP + L+ V +G R G
Sbjct: 2425 SASPEVEAGPQGCAT---EPRPHRGELSPSFLNPPLPPSIDDRDLSTEEVRLVG--RGGR 2479
Query: 277 RRTGQVGPTMHPPPVSGASP 296
RR G G T P PV+ +P
Sbjct: 2480 RRVGGPGTTGGPCPVTDETP 2499
>gi|82546830 SEC8 protein isoform a [Homo sapiens]
Length = 974
Score = 28.5 bits (62), Expect = 8.0
Identities = 15/53 (28%), Positives = 25/53 (47%)
Query: 217 LCMTLAESSCPDYERGRRACLTLHRHPTPHCSTWGLPLRVAGSWLTVVTVEAL 269
+ TL+E + + R L LH HC + +PL G++ V VE++
Sbjct: 756 IMQTLSELAKSFQDMADRCLLVLHLEVRVHCFHYLIPLAKEGNYAIVANVESM 808
>gi|150378452 heparan-alpha-glucosaminide N-acetyltransferase [Homo
sapiens]
Length = 635
Score = 28.5 bits (62), Expect = 8.0
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Query: 227 PDYERGRRACLTLHRHPTPHCSTWGLPLRVAGSWLTVVTVEALGGWRMGVRRTGQVGPTM 286
P++ R+CL+L R T W L L + G WL + + + G G G +G
Sbjct: 371 PEHCASERSCLSL-RDITSSWPQWLLILVLEGLWLGLTFLLPVPGCPTGYLGPGGIGDFG 429
Query: 287 HPPPVSGASPLLLHHLLL 304
P +G + + LLL
Sbjct: 430 KYPNCTGGAAGYIDRLLL 447
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.137 0.445
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,512,943
Number of Sequences: 37866
Number of extensions: 644722
Number of successful extensions: 2233
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 2223
Number of HSP's gapped (non-prelim): 25
length of query: 313
length of database: 18,247,518
effective HSP length: 102
effective length of query: 211
effective length of database: 14,385,186
effective search space: 3035274246
effective search space used: 3035274246
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.