Search of human proteins with 42542383

Search of human proteins with 42542383

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|42542383 solute carrier family 28, member 1 isoform 2 [Homo
sapiens]
         (175 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|42542383 solute carrier family 28, member 1 isoform 2 [Homo s...   362   e-101
gi|42542381 solute carrier family 28, member 1 isoform 1 [Homo s...   314   3e-86
gi|227116277 solute carrier family 28 (sodium-coupled nucleoside...   112   2e-25
gi|11545853 concentrative Na+-nucleoside cotransporter [Homo sap...    45   2e-05
gi|5902122 spectrin, beta, non-erythrocytic 2 [Homo sapiens]           29   2.4  
gi|10880983 gephyrin isoform 1 [Homo sapiens]                          28   4.1  
gi|4502687 CD84 molecule [Homo sapiens]                                28   4.1  
gi|66932975 gephyrin isoform 2 [Homo sapiens]                          28   4.1  
gi|239756473 PREDICTED: transmembrane protein 114 [Homo sapiens]       27   6.9  
gi|139394621 chondroitin sulfate proteoglycan 5 (neuroglycan C) ...    27   6.9  
gi|226437592 transmembrane protein 114 [Homo sapiens]                  27   6.9  
gi|239753578 PREDICTED: similar to cartilage associated protein ...    27   9.0  
gi|4505357 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4...    27   9.0  
gi|89941479 hypothetical protein LOC148137 [Homo sapiens]              27   9.0  

>gi|42542383 solute carrier family 28, member 1 isoform 2 [Homo
           sapiens]
          Length = 175

 Score =  362 bits (930), Expect = e-101
 Identities = 175/175 (100%), Positives = 175/175 (100%)

Query: 1   MENDPSRRRESISLTPVAKGLENMGADFLESLEEGQLPRSDLSPAEIRSSWSEAAPKPFS 60
           MENDPSRRRESISLTPVAKGLENMGADFLESLEEGQLPRSDLSPAEIRSSWSEAAPKPFS
Sbjct: 1   MENDPSRRRESISLTPVAKGLENMGADFLESLEEGQLPRSDLSPAEIRSSWSEAAPKPFS 60

Query: 61  RWRNLQPALRARSFCREHMQLFRWIGTGLLCTGLSAFLLVACLLDFQRALALFVLTCVVL 120
           RWRNLQPALRARSFCREHMQLFRWIGTGLLCTGLSAFLLVACLLDFQRALALFVLTCVVL
Sbjct: 61  RWRNLQPALRARSFCREHMQLFRWIGTGLLCTGLSAFLLVACLLDFQRALALFVLTCVVL 120

Query: 121 TFLGHRLLKRLLGPKLRRFLKPQGHPRLLLWFKRDPRPWSKEGPNQYLPQITWTV 175
           TFLGHRLLKRLLGPKLRRFLKPQGHPRLLLWFKRDPRPWSKEGPNQYLPQITWTV
Sbjct: 121 TFLGHRLLKRLLGPKLRRFLKPQGHPRLLLWFKRDPRPWSKEGPNQYLPQITWTV 175


>gi|42542381 solute carrier family 28, member 1 isoform 1 [Homo
           sapiens]
          Length = 649

 Score =  314 bits (804), Expect = 3e-86
 Identities = 154/154 (100%), Positives = 154/154 (100%)

Query: 1   MENDPSRRRESISLTPVAKGLENMGADFLESLEEGQLPRSDLSPAEIRSSWSEAAPKPFS 60
           MENDPSRRRESISLTPVAKGLENMGADFLESLEEGQLPRSDLSPAEIRSSWSEAAPKPFS
Sbjct: 1   MENDPSRRRESISLTPVAKGLENMGADFLESLEEGQLPRSDLSPAEIRSSWSEAAPKPFS 60

Query: 61  RWRNLQPALRARSFCREHMQLFRWIGTGLLCTGLSAFLLVACLLDFQRALALFVLTCVVL 120
           RWRNLQPALRARSFCREHMQLFRWIGTGLLCTGLSAFLLVACLLDFQRALALFVLTCVVL
Sbjct: 61  RWRNLQPALRARSFCREHMQLFRWIGTGLLCTGLSAFLLVACLLDFQRALALFVLTCVVL 120

Query: 121 TFLGHRLLKRLLGPKLRRFLKPQGHPRLLLWFKR 154
           TFLGHRLLKRLLGPKLRRFLKPQGHPRLLLWFKR
Sbjct: 121 TFLGHRLLKRLLGPKLRRFLKPQGHPRLLLWFKR 154


>gi|227116277 solute carrier family 28 (sodium-coupled nucleoside
           transporter), member 2 [Homo sapiens]
          Length = 658

 Score =  112 bits (280), Expect = 2e-25
 Identities = 66/145 (45%), Positives = 89/145 (61%), Gaps = 3/145 (2%)

Query: 9   RESISLTPVAKGLENMGADFLESLEEGQLPRSDLSPAEIRSSWSEAAPKPFSRWRNLQPA 68
           R+SI+L+ V  G  N G + +E  +E +   S  + A+  S      P  + R R+  P 
Sbjct: 7   RQSIALSTVETGTVNPGLELME--KEVEPEGSKRTDAQGHSLGDGLGPSTYQR-RSRWPF 63

Query: 69  LRARSFCREHMQLFRWIGTGLLCTGLSAFLLVACLLDFQRALALFVLTCVVLTFLGHRLL 128
            +ARSFC+ H  LF+ I  GLLC   +A+LL AC+L+FQRALALFV+TC+V+  L H  L
Sbjct: 64  SKARSFCKTHASLFKKILLGLLCLAYAAYLLAACILNFQRALALFVITCLVIFVLVHSFL 123

Query: 129 KRLLGPKLRRFLKPQGHPRLLLWFK 153
           K+LLG KL R LKP  + RL LW K
Sbjct: 124 KKLLGKKLTRCLKPFENSRLRLWTK 148


>gi|11545853 concentrative Na+-nucleoside cotransporter [Homo
           sapiens]
          Length = 691

 Score = 45.4 bits (106), Expect = 2e-05
 Identities = 21/50 (42%), Positives = 30/50 (60%)

Query: 74  FCREHMQLFRWIGTGLLCTGLSAFLLVACLLDFQRALALFVLTCVVLTFL 123
           FCR+H    R I  G+L  G    ++ AC+L+F RAL LFV+T   + F+
Sbjct: 93  FCRKHKTTLRHIIWGILLAGYLVMVISACVLNFHRALPLFVITVAAIFFV 142


>gi|5902122 spectrin, beta, non-erythrocytic 2 [Homo sapiens]
          Length = 2390

 Score = 28.9 bits (63), Expect = 2.4
 Identities = 13/42 (30%), Positives = 22/42 (52%)

Query: 45   AEIRSSWSEAAPKPFSRWRNLQPALRARSFCREHMQLFRWIG 86
            AE++  W     +   R + L+ ALRA+ F R+  +   W+G
Sbjct: 1564 AELQEMWKRLGHELELRGKRLEDALRAQQFYRDAAEAEAWMG 1605


>gi|10880983 gephyrin isoform 1 [Homo sapiens]
          Length = 769

 Score = 28.1 bits (61), Expect = 4.1
 Identities = 11/40 (27%), Positives = 22/40 (55%)

Query: 127 LLKRLLGPKLRRFLKPQGHPRLLLWFKRDPRPWSKEGPNQ 166
           ++K  L   ++   +P+ H  +L W  ++P PW++   NQ
Sbjct: 689 IIKARLSCDVKLDPRPEYHRCILTWHHQEPLPWAQSTGNQ 728


>gi|4502687 CD84 molecule [Homo sapiens]
          Length = 328

 Score = 28.1 bits (61), Expect = 4.1
 Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 4/94 (4%)

Query: 11  SISLT-PVAKGLENMGADFLESLEEGQLPRSDLSPAEIRSSWSEAAPKPFSRWRNLQPAL 69
           +++LT  V K  +N+  ++    EEG + +   +P +   +++  A  P S   N   ++
Sbjct: 150 NVTLTCSVEKEEKNVTYNWSPLGEEGNVLQIFQTPEDQELTYTCTAQNPVS---NNSDSI 206

Query: 70  RARSFCREHMQLFRWIGTGLLCTGLSAFLLVACL 103
            AR  C +    FR   TGLL      FLLV  L
Sbjct: 207 SARQLCADIAMGFRTHHTGLLSVLAMFFLLVLIL 240


>gi|66932975 gephyrin isoform 2 [Homo sapiens]
          Length = 736

 Score = 28.1 bits (61), Expect = 4.1
 Identities = 11/40 (27%), Positives = 22/40 (55%)

Query: 127 LLKRLLGPKLRRFLKPQGHPRLLLWFKRDPRPWSKEGPNQ 166
           ++K  L   ++   +P+ H  +L W  ++P PW++   NQ
Sbjct: 656 IIKARLSCDVKLDPRPEYHRCILTWHHQEPLPWAQSTGNQ 695


>gi|239756473 PREDICTED: transmembrane protein 114 [Homo sapiens]
          Length = 223

 Score = 27.3 bits (59), Expect = 6.9
 Identities = 16/60 (26%), Positives = 27/60 (45%)

Query: 24 MGADFLESLEEGQLPRSDLSPAEIRSSWSEAAPKPFSRWRNLQPALRARSFCREHMQLFR 83
          +G DF   ++  +L R+     ++  S + + P+P S    L    R +S C   M  FR
Sbjct: 27 IGTDFWYIIDTERLERTGPGAQDLLGSINRSQPEPLSSHSGLWRTCRVQSPCTPLMNPFR 86


>gi|139394621 chondroitin sulfate proteoglycan 5 (neuroglycan C)
           precursor [Homo sapiens]
          Length = 539

 Score = 27.3 bits (59), Expect = 6.9
 Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 1/66 (1%)

Query: 73  SFCREHMQLFRWIGTGLLCTGLSAFLLVACLLDFQRALALFVLTCVVLTFLGHRLLKRLL 132
           +FCR + Q + W   G+ C  +     V C+     AL L +L  + + F     L +  
Sbjct: 395 AFCRCNTQDYIW-HKGMRCESIITDFQVMCVAVGSAALVLLLLFMMTVFFAKKLYLLKTE 453

Query: 133 GPKLRR 138
             KLRR
Sbjct: 454 NTKLRR 459


>gi|226437592 transmembrane protein 114 [Homo sapiens]
          Length = 223

 Score = 27.3 bits (59), Expect = 6.9
 Identities = 16/60 (26%), Positives = 27/60 (45%)

Query: 24 MGADFLESLEEGQLPRSDLSPAEIRSSWSEAAPKPFSRWRNLQPALRARSFCREHMQLFR 83
          +G DF   ++  +L R+     ++  S + + P+P S    L    R +S C   M  FR
Sbjct: 27 IGTDFWYIIDTERLERTGPGAQDLLGSINRSQPEPLSSHSGLWRTCRVQSPCTPLMNPFR 86


>gi|239753578 PREDICTED: similar to cartilage associated protein
           [Homo sapiens]
          Length = 241

 Score = 26.9 bits (58), Expect = 9.0
 Identities = 15/53 (28%), Positives = 24/53 (45%)

Query: 5   PSRRRESISLTPVAKGLENMGADFLESLEEGQLPRSDLSPAEIRSSWSEAAPK 57
           P  R   I +    + ++ + A   +   +G LPR D    +I  SWS AA +
Sbjct: 170 PGNRETMIHVQSPRRVIKLLKAGPPDCSSKGSLPREDACKTQIVLSWSHAAAR 222


>gi|4505357 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4,
           9kDa [Homo sapiens]
          Length = 81

 Score = 26.9 bits (58), Expect = 9.0
 Identities = 8/15 (53%), Positives = 11/15 (73%)

Query: 151 WFKRDPRPWSKEGPN 165
           W + +P PW+K GPN
Sbjct: 45  WDRNNPEPWNKLGPN 59


>gi|89941479 hypothetical protein LOC148137 [Homo sapiens]
          Length = 425

 Score = 26.9 bits (58), Expect = 9.0
 Identities = 15/48 (31%), Positives = 21/48 (43%)

Query: 20  GLENMGADFLESLEEGQLPRSDLSPAEIRSSWSEAAPKPFSRWRNLQP 67
           GL      F+    +G  PR+  SPA  ++     AP P S    L+P
Sbjct: 235 GLSPFSETFIPDSSKGLGPRAPASPAPAQAQTPTPAPAPASSQAPLRP 282


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.325    0.140    0.454 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,767,466
Number of Sequences: 37866
Number of extensions: 360190
Number of successful extensions: 1114
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1101
Number of HSP's gapped (non-prelim): 15
length of query: 175
length of database: 18,247,518
effective HSP length: 95
effective length of query: 80
effective length of database: 14,650,248
effective search space: 1172019840
effective search space used: 1172019840
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.