Guide to the Human Genome
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Name: FLJ10213 Sequence: fasta or formatted (272aa) NCBI GI: 40538806
Description:

hypothetical protein LOC55096

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9         16           2
 C cysteine            2.2          6           2
 D aspartate           5.9         16           2
 E glutamate           4.0         11           2
 F phenylalanine       5.5         15           1
 G glycine             6.2         17           1
 H histidine           3.3          9           1
 I isoleucine          5.1         14           1
 K lysine              6.6         18           2
 L leucine            11.0         30           2
 M methionine          3.3          9           2
 N asparagine          3.3          9           1
 P proline             5.1         14           1
 Q glutamine           2.9          8           1
 R arginine            6.2         17           2
 S serine             13.2         36           2
 T threonine           2.2          6           1
 V valine              4.4         12           2
 W tryptophan          1.1          3           1
 Y tyrosine            2.2          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC55096 
LOC340900             0.558   PREDICTED: hypothetical protein LOC340900 
LOC340900             0.545   PREDICTED: hypothetical protein LOC340900 
LOC340900             0.539   PREDICTED: hypothetical protein LOC340900 
MYO3A                 0.010   myosin IIIA 
LOC100131897          0.008   hypothetical protein LOC100131897 
LOC100290337          0.006   PREDICTED: hypothetical protein XP_002347285 
PPP1CC                0.006   protein phosphatase 1, catalytic subunit, gamma isofo...
DDB1                  0.006   damage-specific DNA binding protein 1 
RNF214                0.006   ring finger protein 214 
RNF214                0.006   ring finger protein 214 
ITGA7                 0.006   integrin alpha 7 isoform 3 
ITGA7                 0.006   integrin alpha 7 isoform 1 precursor 
ITGA7                 0.006   integrin alpha 7 isoform 2 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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