Search of human proteins with 40068512

Search of human proteins with 40068512

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|40068512 fucosidase, alpha-L- 2, plasma [Homo sapiens]
         (467 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|40068512 fucosidase, alpha-L- 2, plasma [Homo sapiens]            1006   0.0  
gi|119360348 fucosidase, alpha-L-1, tissue [Homo sapiens]             548   e-156
gi|46488919 astrotactin 2 isoform c [Homo sapiens]                     32   1.6  
gi|46488917 astrotactin 2 isoform b [Homo sapiens]                     32   1.6  
gi|46488915 astrotactin 2 isoform a [Homo sapiens]                     32   1.6  
gi|56237029 integrin alpha 5 precursor [Homo sapiens]                  31   2.1  
gi|11038659 ADAM metallopeptidase with thrombospondin type 1 mot...    31   2.7  
gi|110825974 ADAM metallopeptidase with thrombospondin type 1 mo...    31   2.7  
gi|114796626 solute carrier family 16, member 8 [Homo sapiens]         31   2.7  
gi|39777610 semaphorin 4B precursor [Homo sapiens]                     30   3.6  
gi|39777608 semaphorin 4B precursor [Homo sapiens]                     30   3.6  
gi|19923632 Kazal-type serine peptidase inhibitor domain 1 precu...    30   3.6  
gi|13325064 cadherin EGF LAG seven-pass G-type receptor 2 [Homo ...    30   4.7  
gi|22035694 GDNF family receptor alpha 3 preproprotein [Homo sap...    30   4.7  
gi|4504217 guanylate cyclase 2D, membrane (retina-specific) [Hom...    30   6.1  
gi|12056463 coagulation factor VIII-associated protein [Homo sap...    30   6.1  
gi|56090586 coagulation factor VIII-associated (intronic transcr...    30   6.1  
gi|56090588 coagulation factor VIII-associated (intronic transcr...    30   6.1  
gi|33942072 trinucleotide repeat containing 5 [Homo sapiens]           29   8.0  

>gi|40068512 fucosidase, alpha-L- 2, plasma [Homo sapiens]
          Length = 467

 Score = 1006 bits (2602), Expect = 0.0
 Identities = 467/467 (100%), Positives = 467/467 (100%)

Query: 1   MRPQELPRLAFPLLLLLLLLLPPPPCPAHSATRFDPTWESLDARQLPAWFDQAKFGIFIH 60
           MRPQELPRLAFPLLLLLLLLLPPPPCPAHSATRFDPTWESLDARQLPAWFDQAKFGIFIH
Sbjct: 1   MRPQELPRLAFPLLLLLLLLLPPPPCPAHSATRFDPTWESLDARQLPAWFDQAKFGIFIH 60

Query: 61  WGVFSVPSFGSEWFWWYWQKEKIPKYVEFMKDNYPPSFKYEDFGPLFTAKFFNANQWADI 120
           WGVFSVPSFGSEWFWWYWQKEKIPKYVEFMKDNYPPSFKYEDFGPLFTAKFFNANQWADI
Sbjct: 61  WGVFSVPSFGSEWFWWYWQKEKIPKYVEFMKDNYPPSFKYEDFGPLFTAKFFNANQWADI 120

Query: 121 FQASGAKYIVLTSKHHEGFTLWGSEYSWNWNAIDEGPKRDIVKELEVAIRNRTDLRFGLY 180
           FQASGAKYIVLTSKHHEGFTLWGSEYSWNWNAIDEGPKRDIVKELEVAIRNRTDLRFGLY
Sbjct: 121 FQASGAKYIVLTSKHHEGFTLWGSEYSWNWNAIDEGPKRDIVKELEVAIRNRTDLRFGLY 180

Query: 181 YSLFEWFHPLFLEDESSSFHKRQFPVSKTLPELYELVNNYQPEVLWSDGDGGAPDQYWNS 240
           YSLFEWFHPLFLEDESSSFHKRQFPVSKTLPELYELVNNYQPEVLWSDGDGGAPDQYWNS
Sbjct: 181 YSLFEWFHPLFLEDESSSFHKRQFPVSKTLPELYELVNNYQPEVLWSDGDGGAPDQYWNS 240

Query: 241 TGFLAWLYNESPVRGTVVTNDRWGAGSICKHGGFYTCSDRYNPGHLLPHKWENCMTIDKL 300
           TGFLAWLYNESPVRGTVVTNDRWGAGSICKHGGFYTCSDRYNPGHLLPHKWENCMTIDKL
Sbjct: 241 TGFLAWLYNESPVRGTVVTNDRWGAGSICKHGGFYTCSDRYNPGHLLPHKWENCMTIDKL 300

Query: 301 SWGYRREAGISDYLTIEELVKQLVETVSCGGNLLMNIGPTLDGTISVVFEERLRQMGSWL 360
           SWGYRREAGISDYLTIEELVKQLVETVSCGGNLLMNIGPTLDGTISVVFEERLRQMGSWL
Sbjct: 301 SWGYRREAGISDYLTIEELVKQLVETVSCGGNLLMNIGPTLDGTISVVFEERLRQMGSWL 360

Query: 361 KVNGEAIYETHTWRSQNDTVTPDVWYTSKPKEKLVYAIFLKWPTSGQLFLGHPKAILGAT 420
           KVNGEAIYETHTWRSQNDTVTPDVWYTSKPKEKLVYAIFLKWPTSGQLFLGHPKAILGAT
Sbjct: 361 KVNGEAIYETHTWRSQNDTVTPDVWYTSKPKEKLVYAIFLKWPTSGQLFLGHPKAILGAT 420

Query: 421 EVKLLGHGQPLNWISLEQNGIMVELPQLTIHQMPCKWGWALALTNVI 467
           EVKLLGHGQPLNWISLEQNGIMVELPQLTIHQMPCKWGWALALTNVI
Sbjct: 421 EVKLLGHGQPLNWISLEQNGIMVELPQLTIHQMPCKWGWALALTNVI 467


>gi|119360348 fucosidase, alpha-L-1, tissue [Homo sapiens]
          Length = 466

 Score =  548 bits (1413), Expect = e-156
 Identities = 253/461 (54%), Positives = 320/461 (69%), Gaps = 6/461 (1%)

Query: 8   RLAFPLLLLLLLLLPPPPCP--AHSATRFDPTWESLDARQLPAWFDQAKFGIFIHWGVFS 65
           R A P LLLLLL L        A    R+ P W SLD+R LPAWFD+AKFG+FIHWGVFS
Sbjct: 9   RPAGPALLLLLLFLGAAESVRRAQPPRRYTPDWPSLDSRPLPAWFDEAKFGVFIHWGVFS 68

Query: 66  VPSFGSEWFWWYWQKEKIPKYVEFMKDNYPPSFKYEDFGPLFTAKFFNANQWADIFQASG 125
           VP++GSEWFWW+WQ E  P+Y  FM+DNYPP F Y DFGP FTA+FF+  +WAD+FQA+G
Sbjct: 69  VPAWGSEWFWWHWQGEGRPQYQRFMRDNYPPGFSYADFGPQFTARFFHPEEWADLFQAAG 128

Query: 126 AKYIVLTSKHHEGFTLWGSEYSWNWNAIDEGPKRDIVKELEVAIRNRTDLRFGLYYSLFE 185
           AKY+VLT+KHHEGFT W S  SWNWN+ D GP RD+V EL  A+R R ++R+GLY+SL E
Sbjct: 129 AKYVVLTTKHHEGFTNWPSPVSWNWNSKDVGPHRDLVGELGTALRKR-NIRYGLYHSLLE 187

Query: 186 WFHPLFLEDESSSFHKRQFPVSKTLPELYELVNNYQPEVLWSDGDGGAPDQYWNSTGFLA 245
           WFHPL+L D+ + F  + F  +KT+PELY+LVN+Y+P+++WSDG+   PD YWNST FL+
Sbjct: 188 WFHPLYLLDKKNGFKTQHFVSAKTMPELYDLVNSYKPDLIWSDGEWECPDTYWNSTNFLS 247

Query: 246 WLYNESPVRGTVVTNDRWGAGSICKHGGFYTCSDRYNPGHLLPHKWENCMTIDKLSWGYR 305
           WLYN+SPV+  VV NDRWG    C HGG+Y C D++ P  L  HKWE C +IDK SWGYR
Sbjct: 248 WLYNDSPVKDEVVVNDRWGQNCSCHHGGYYNCEDKFKPQSLPDHKWEMCTSIDKFSWGYR 307

Query: 306 REAGISDYLTIEELVKQLVETVSCGGNLLMNIGPTLDGTISVVFEERLRQMGSWLKVNGE 365
           R+  +SD     E++ +LV+TVS GGN L+NIGPT DG I  +F+ERL  +G WL +NGE
Sbjct: 308 RDMALSDVTEESEIISELVQTVSLGGNYLLNIGPTKDGLIVPIFQERLLAVGKWLSINGE 367

Query: 366 AIYETHTWRSQNDTVTPDVWYTSKPKEKLVYAIFLKWPTSGQLFLGHPKAILGATEVKLL 425
           AIY +  WR Q +  T  VWYTS  K   VYAIFL WP +G L L  P      T++ +L
Sbjct: 368 AIYASKPWRVQWEKNTTSVWYTS--KGSAVYAIFLHWPENGVLNLESP-ITTSTTKITML 424

Query: 426 GHGQPLNWISLEQNGIMVELPQLTIHQMPCKWGWALALTNV 466
           G    L W +    G+ + LPQL    +P ++ W + LT V
Sbjct: 425 GIQGDLKWSTDPDKGLFISLPQLPPSAVPAEFAWTIKLTGV 465


>gi|46488919 astrotactin 2 isoform c [Homo sapiens]
          Length = 1339

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 17/27 (62%), Positives = 17/27 (62%), Gaps = 8/27 (29%)

Query: 7  PRLAF--------PLLLLLLLLLPPPP 25
          PRL F        PLLLL LLLLPPPP
Sbjct: 20 PRLCFHPGPPPLLPLLLLFLLLLPPPP 46


>gi|46488917 astrotactin 2 isoform b [Homo sapiens]
          Length = 1335

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 17/27 (62%), Positives = 17/27 (62%), Gaps = 8/27 (29%)

Query: 7  PRLAF--------PLLLLLLLLLPPPP 25
          PRL F        PLLLL LLLLPPPP
Sbjct: 20 PRLCFHPGPPPLLPLLLLFLLLLPPPP 46


>gi|46488915 astrotactin 2 isoform a [Homo sapiens]
          Length = 1288

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 17/27 (62%), Positives = 17/27 (62%), Gaps = 8/27 (29%)

Query: 7  PRLAF--------PLLLLLLLLLPPPP 25
          PRL F        PLLLL LLLLPPPP
Sbjct: 20 PRLCFHPGPPPLLPLLLLFLLLLPPPP 46


>gi|56237029 integrin alpha 5 precursor [Homo sapiens]
          Length = 1049

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 15/19 (78%), Positives = 15/19 (78%)

Query: 7  PRLAFPLLLLLLLLLPPPP 25
          PR   PLL LLLLLLPPPP
Sbjct: 19 PRRRPPLLPLLLLLLPPPP 37


>gi|11038659 ADAM metallopeptidase with thrombospondin type 1
          motif, 2 isoform 2 [Homo sapiens]
          Length = 566

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 15/20 (75%), Positives = 15/20 (75%)

Query: 8  RLAFPLLLLLLLLLPPPPCP 27
          RL  P LLLLLLLLPPP  P
Sbjct: 10 RLLCPALLLLLLLLPPPLLP 29


>gi|110825974 ADAM metallopeptidase with thrombospondin type 1
          motif, 2 isoform 1 preproprotein [Homo sapiens]
          Length = 1211

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 15/20 (75%), Positives = 15/20 (75%)

Query: 8  RLAFPLLLLLLLLLPPPPCP 27
          RL  P LLLLLLLLPPP  P
Sbjct: 10 RLLCPALLLLLLLLPPPLLP 29


>gi|114796626 solute carrier family 16, member 8 [Homo sapiens]
          Length = 504

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 225 LWSDGDGGAPDQYWNSTGFLAWLYNESPVRGTVVTNDRWGAGSICKHGG 273
           L  D D G  D  W S+  LA LY   PV   +VT  R+G   +   GG
Sbjct: 46  LMRDFDAGYSDTAWVSSIMLAMLYGTGPVSSILVT--RFGCRPVMLAGG 92


>gi|39777610 semaphorin 4B precursor [Homo sapiens]
          Length = 837

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 20/49 (40%), Positives = 22/49 (44%), Gaps = 10/49 (20%)

Query: 7  PRLAFPLLLLLLLLLPPPPCPAHSATRFDPTWESLDARQLPAWFDQAKF 55
          PR    LLLLLLLLL PPP          PTW       LP   ++  F
Sbjct: 21 PRPPLLLLLLLLLLLQPPP----------PTWALSPRISLPLGSEERPF 59


>gi|39777608 semaphorin 4B precursor [Homo sapiens]
          Length = 837

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 20/49 (40%), Positives = 22/49 (44%), Gaps = 10/49 (20%)

Query: 7  PRLAFPLLLLLLLLLPPPPCPAHSATRFDPTWESLDARQLPAWFDQAKF 55
          PR    LLLLLLLLL PPP          PTW       LP   ++  F
Sbjct: 21 PRPPLLLLLLLLLLLQPPP----------PTWALSPRISLPLGSEERPF 59


>gi|19923632 Kazal-type serine peptidase inhibitor domain 1
          precursor [Homo sapiens]
          Length = 304

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 14/26 (53%), Positives = 18/26 (69%)

Query: 3  PQELPRLAFPLLLLLLLLLPPPPCPA 28
          P+    LA P+LLLLL++L PPP  A
Sbjct: 5  PRPAAALALPVLLLLLVVLTPPPTGA 30


>gi|13325064 cadherin EGF LAG seven-pass G-type receptor 2 [Homo
          sapiens]
          Length = 2923

 Score = 30.0 bits (66), Expect = 4.7
 Identities = 15/19 (78%), Positives = 15/19 (78%)

Query: 6  LPRLAFPLLLLLLLLLPPP 24
          LP    PLLLLLLLLLPPP
Sbjct: 10 LPTPPPPLLLLLLLLLPPP 28


>gi|22035694 GDNF family receptor alpha 3 preproprotein [Homo
          sapiens]
          Length = 400

 Score = 30.0 bits (66), Expect = 4.7
 Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 4/27 (14%)

Query: 1  MRPQELPRLAFPLLLLLLLLLPPPPCP 27
          + P+ LP    P++L+LLLLLPP P P
Sbjct: 5  LNPRPLP----PVVLMLLLLLPPSPLP 27


>gi|4504217 guanylate cyclase 2D, membrane (retina-specific) [Homo
          sapiens]
          Length = 1103

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 16/21 (76%), Positives = 17/21 (80%), Gaps = 2/21 (9%)

Query: 3  PQELPRLAFPLLLLLLLLLPP 23
          P+ LPRL  PLLLLLLLL PP
Sbjct: 30 PRALPRL--PLLLLLLLLQPP 48


>gi|12056463 coagulation factor VIII-associated protein [Homo
           sapiens]
          Length = 371

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%)

Query: 6   LPRLAFPLLLLLLLLLPPPP--CPAHSATRFDPTWESLDA 43
           L R     +LLLLLL PPP    P H+ T    +WE+ D+
Sbjct: 266 LVRCEVSRVLLLLLLQPPPAKLLPEHAQTLEKYSWEAFDS 305


>gi|56090586 coagulation factor VIII-associated (intronic
           transcript) 3 [Homo sapiens]
          Length = 371

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%)

Query: 6   LPRLAFPLLLLLLLLLPPPP--CPAHSATRFDPTWESLDA 43
           L R     +LLLLLL PPP    P H+ T    +WE+ D+
Sbjct: 266 LVRCEVSRVLLLLLLQPPPAKLLPEHAQTLEKYSWEAFDS 305


>gi|56090588 coagulation factor VIII-associated (intronic
           transcript) 2 [Homo sapiens]
          Length = 371

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%)

Query: 6   LPRLAFPLLLLLLLLLPPPP--CPAHSATRFDPTWESLDA 43
           L R     +LLLLLL PPP    P H+ T    +WE+ D+
Sbjct: 266 LVRCEVSRVLLLLLLQPPPAKLLPEHAQTLEKYSWEAFDS 305


>gi|33942072 trinucleotide repeat containing 5 [Homo sapiens]
          Length = 278

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 16/36 (44%), Positives = 19/36 (52%)

Query: 9  LAFPLLLLLLLLLPPPPCPAHSATRFDPTWESLDAR 44
          L  PLLLLLLLLLP P      A   +  W  L ++
Sbjct: 13 LLLPLLLLLLLLLPAPELGPSQAGAEENDWVRLPSK 48


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.139    0.471 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,970,404
Number of Sequences: 37866
Number of extensions: 1017267
Number of successful extensions: 2569
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 2513
Number of HSP's gapped (non-prelim): 32
length of query: 467
length of database: 18,247,518
effective HSP length: 106
effective length of query: 361
effective length of database: 14,233,722
effective search space: 5138373642
effective search space used: 5138373642
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.