Guide to the Human Genome
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Name: FUCA1 Sequence: fasta or formatted (466aa) NCBI GI: 119360348
Description:

fucosidase, alpha-L-1, tissue

Referenced in:

Protein Glycosylation
Lysosomes and Related Organelles

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6         26           2
 C cysteine            1.1          5           1
 D aspartate           5.4         25           1
 E glutamate           5.4         25           2
 F phenylalanine       5.2         24           2
 G glycine             7.3         34           2
 H histidine           2.8         13           2
 I isoleucine          3.6         17           2
 K lysine              5.4         25           2
 L leucine             9.4         44           6
 M methionine          1.5          7           1
 N asparagine          4.1         19           1
 P proline             7.5         35           2
 Q glutamine           3.0         14           1
 R arginine            4.5         21           2
 S serine              7.5         35           1
 T threonine           5.4         25           2
 V valine              5.6         26           3
 W tryptophan          5.8         27           2
 Y tyrosine            4.1         19           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   fucosidase, alpha-L-1, tissue 
FUCA2                 0.530   fucosidase, alpha-L- 2, plasma 
KL                    0.007   klotho 
WDR87                 0.006   NYD-SP11 protein 
SEMA6B                0.006   semaphorin 6B precursor 
ZNF785                0.006   zinc finger protein 785 
HYAL4                 0.005   hyaluronoglucosaminidase 4 
ZNF688                0.005   zinc finger protein 688 isoform a 
PAK6                  0.004   p21-activated kinase 6 
PAK6                  0.004   p21-activated kinase 6 
PAK6                  0.004   p21-activated kinase 6 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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