Search of human proteins with 40018629

Search of human proteins with 40018629

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|40018629 hypothetical protein LOC23325 [Homo sapiens]
         (1173 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|40018629 hypothetical protein LOC23325 [Homo sapiens]             2332   0.0  
gi|225579152 insulin-like growth factor binding protein, acid la...    33   1.6  
gi|4826772 insulin-like growth factor binding protein, acid labi...    33   1.6  
gi|224809478 retinoic acid induced 14 isoform d [Homo sapiens]         33   2.1  
gi|224809476 retinoic acid induced 14 isoform c [Homo sapiens]         33   2.1  
gi|224809474 retinoic acid induced 14 isoform b [Homo sapiens]         33   2.1  
gi|224809472 retinoic acid induced 14 isoform a [Homo sapiens]         33   2.1  
gi|224809470 retinoic acid induced 14 isoform a [Homo sapiens]         33   2.1  
gi|224809468 retinoic acid induced 14 isoform a [Homo sapiens]         33   2.1  
gi|148806872 lupus brain antigen 1 [Homo sapiens]                      32   3.6  
gi|194097392 Golgi autoantigen, golgin subfamily a, 2 [Homo sapi...    32   4.6  
gi|4885261 growth differentiation factor 9 precursor [Homo sapiens]    32   4.6  
gi|50897852 coiled-coil domain containing 88A isoform 2 [Homo sa...    32   4.6  
gi|208022632 coiled-coil domain containing 88A isoform 1 [Homo s...    32   4.6  
gi|19924131 RAD50 homolog isoform 2 [Homo sapiens]                     31   6.1  
gi|19924129 RAD50 homolog isoform 1 [Homo sapiens]                     31   6.1  
gi|52851391 mediator complex subunit 28 [Homo sapiens]                 31   6.1  

>gi|40018629 hypothetical protein LOC23325 [Homo sapiens]
          Length = 1173

 Score = 2332 bits (6044), Expect = 0.0
 Identities = 1173/1173 (100%), Positives = 1173/1173 (100%)

Query: 1    MAVETLSPDWEFDRVDDGSQKIHAEVQLKNYGKFLEEYTSQLRRIEDALDDSIGDVWDFN 60
            MAVETLSPDWEFDRVDDGSQKIHAEVQLKNYGKFLEEYTSQLRRIEDALDDSIGDVWDFN
Sbjct: 1    MAVETLSPDWEFDRVDDGSQKIHAEVQLKNYGKFLEEYTSQLRRIEDALDDSIGDVWDFN 60

Query: 61   LDPIALKLLPYEQSSLLELIKTENKVLNKVITVYAALCCEIKKLKYEAETKFYNGLLFYG 120
            LDPIALKLLPYEQSSLLELIKTENKVLNKVITVYAALCCEIKKLKYEAETKFYNGLLFYG
Sbjct: 61   LDPIALKLLPYEQSSLLELIKTENKVLNKVITVYAALCCEIKKLKYEAETKFYNGLLFYG 120

Query: 121  EGATDASMVEGDCQIQMGRFISFLQELSCFVTRCYEVVMNVVHQLAALYISNKIAPKIIE 180
            EGATDASMVEGDCQIQMGRFISFLQELSCFVTRCYEVVMNVVHQLAALYISNKIAPKIIE
Sbjct: 121  EGATDASMVEGDCQIQMGRFISFLQELSCFVTRCYEVVMNVVHQLAALYISNKIAPKIIE 180

Query: 181  TTGVHFQTMYEHLGELLTVLLTLDEIIDNHITLKDHWTMYKRLLKSVHHNPSKFGIQEEK 240
            TTGVHFQTMYEHLGELLTVLLTLDEIIDNHITLKDHWTMYKRLLKSVHHNPSKFGIQEEK
Sbjct: 181  TTGVHFQTMYEHLGELLTVLLTLDEIIDNHITLKDHWTMYKRLLKSVHHNPSKFGIQEEK 240

Query: 241  LKPFEKFLLKLEGQLLDGMIFQACIEQQFDSLNGGVSVSKNSTFAEEFAHSIRSIFANVE 300
            LKPFEKFLLKLEGQLLDGMIFQACIEQQFDSLNGGVSVSKNSTFAEEFAHSIRSIFANVE
Sbjct: 241  LKPFEKFLLKLEGQLLDGMIFQACIEQQFDSLNGGVSVSKNSTFAEEFAHSIRSIFANVE 300

Query: 301  AKLGEPSEIDQRDKYVGICGLFVLHFQIFRTIDKKFYKSLLDICKKVPAITLTANIIWFP 360
            AKLGEPSEIDQRDKYVGICGLFVLHFQIFRTIDKKFYKSLLDICKKVPAITLTANIIWFP
Sbjct: 301  AKLGEPSEIDQRDKYVGICGLFVLHFQIFRTIDKKFYKSLLDICKKVPAITLTANIIWFP 360

Query: 361  DNFLIQKIPAAAKLLDRKSLQAIKIHRDTFLQQKAQSLTKDVQSYYVFVSSWMMKMESIL 420
            DNFLIQKIPAAAKLLDRKSLQAIKIHRDTFLQQKAQSLTKDVQSYYVFVSSWMMKMESIL
Sbjct: 361  DNFLIQKIPAAAKLLDRKSLQAIKIHRDTFLQQKAQSLTKDVQSYYVFVSSWMMKMESIL 420

Query: 421  SKEQRMDKFAEDLTNRCNVFIQGFLYAYSISTIIKTTMNLYMSMQKPMTKTSVKALCRLV 480
            SKEQRMDKFAEDLTNRCNVFIQGFLYAYSISTIIKTTMNLYMSMQKPMTKTSVKALCRLV
Sbjct: 421  SKEQRMDKFAEDLTNRCNVFIQGFLYAYSISTIIKTTMNLYMSMQKPMTKTSVKALCRLV 480

Query: 481  ELLKAIEHMFYRRSMVVADSVSHITQHLQHQALHSISVAKKRVISDKKYSEQRLDVLSAL 540
            ELLKAIEHMFYRRSMVVADSVSHITQHLQHQALHSISVAKKRVISDKKYSEQRLDVLSAL
Sbjct: 481  ELLKAIEHMFYRRSMVVADSVSHITQHLQHQALHSISVAKKRVISDKKYSEQRLDVLSAL 540

Query: 541  VLAENTLNGPSTKQRRLIVSLALSVGTQMKTFKDEELFPLQVVMKKLDLISELRERVQTQ 600
            VLAENTLNGPSTKQRRLIVSLALSVGTQMKTFKDEELFPLQVVMKKLDLISELRERVQTQ
Sbjct: 541  VLAENTLNGPSTKQRRLIVSLALSVGTQMKTFKDEELFPLQVVMKKLDLISELRERVQTQ 600

Query: 601  CDCCFLYWHRAVFPIYLDDVYENAVDAARLHYMFSALRDCVPAMMHARHLESYEILLDCY 660
            CDCCFLYWHRAVFPIYLDDVYENAVDAARLHYMFSALRDCVPAMMHARHLESYEILLDCY
Sbjct: 601  CDCCFLYWHRAVFPIYLDDVYENAVDAARLHYMFSALRDCVPAMMHARHLESYEILLDCY 660

Query: 661  DKEIMEILNEHLLDKLCKEIEKDLRLSVHTHLKLDDRNPFKVGMKDLALFFSLNPIRFFN 720
            DKEIMEILNEHLLDKLCKEIEKDLRLSVHTHLKLDDRNPFKVGMKDLALFFSLNPIRFFN
Sbjct: 661  DKEIMEILNEHLLDKLCKEIEKDLRLSVHTHLKLDDRNPFKVGMKDLALFFSLNPIRFFN 720

Query: 721  RFIDIRAYVTHYLDKTFYNLTTVALHDWATYSEMRNLATQRYGLVMTEAHLPSQTLEQGL 780
            RFIDIRAYVTHYLDKTFYNLTTVALHDWATYSEMRNLATQRYGLVMTEAHLPSQTLEQGL
Sbjct: 721  RFIDIRAYVTHYLDKTFYNLTTVALHDWATYSEMRNLATQRYGLVMTEAHLPSQTLEQGL 780

Query: 781  DVLEIMRNIHIFVSRYLYNLNNQIFIERTSNNKHLNTINIRHIANSIRTHGTGIMNTTVN 840
            DVLEIMRNIHIFVSRYLYNLNNQIFIERTSNNKHLNTINIRHIANSIRTHGTGIMNTTVN
Sbjct: 781  DVLEIMRNIHIFVSRYLYNLNNQIFIERTSNNKHLNTINIRHIANSIRTHGTGIMNTTVN 840

Query: 841  FTYQFLKKKFYIFSQFMYDEHIKSRLIKDIRFFREIKDQNDHKYPFDRAEKFNRGIRKLG 900
            FTYQFLKKKFYIFSQFMYDEHIKSRLIKDIRFFREIKDQNDHKYPFDRAEKFNRGIRKLG
Sbjct: 841  FTYQFLKKKFYIFSQFMYDEHIKSRLIKDIRFFREIKDQNDHKYPFDRAEKFNRGIRKLG 900

Query: 901  VTPEGQSYLDQFRQLISQIGNAMGYVRMIRSGGLHCSSNAIRFVPDLEDIVNFEELVKEE 960
            VTPEGQSYLDQFRQLISQIGNAMGYVRMIRSGGLHCSSNAIRFVPDLEDIVNFEELVKEE
Sbjct: 901  VTPEGQSYLDQFRQLISQIGNAMGYVRMIRSGGLHCSSNAIRFVPDLEDIVNFEELVKEE 960

Query: 961  GLAEETLKAARHLDSVLSDHTRNSAEGTEYFKMLVDVFAPEFRRPKNIHLRNFYIIVPPL 1020
            GLAEETLKAARHLDSVLSDHTRNSAEGTEYFKMLVDVFAPEFRRPKNIHLRNFYIIVPPL
Sbjct: 961  GLAEETLKAARHLDSVLSDHTRNSAEGTEYFKMLVDVFAPEFRRPKNIHLRNFYIIVPPL 1020

Query: 1021 TLNFVEHSISCKEKLNKKNKIGAAFTDDGFAMGVAYILKLLDQYREFDSLHWFQSVREKY 1080
            TLNFVEHSISCKEKLNKKNKIGAAFTDDGFAMGVAYILKLLDQYREFDSLHWFQSVREKY
Sbjct: 1021 TLNFVEHSISCKEKLNKKNKIGAAFTDDGFAMGVAYILKLLDQYREFDSLHWFQSVREKY 1080

Query: 1081 LKEIRAVAKQQNVQSASQDEKLLQTMNLTQKRLDVYLQEFELLYFSLSSARIFFRADKTA 1140
            LKEIRAVAKQQNVQSASQDEKLLQTMNLTQKRLDVYLQEFELLYFSLSSARIFFRADKTA
Sbjct: 1081 LKEIRAVAKQQNVQSASQDEKLLQTMNLTQKRLDVYLQEFELLYFSLSSARIFFRADKTA 1140

Query: 1141 AEENQEKKEKEEETKTSNGDLSDSTVSADPVVK 1173
            AEENQEKKEKEEETKTSNGDLSDSTVSADPVVK
Sbjct: 1141 AEENQEKKEKEEETKTSNGDLSDSTVSADPVVK 1173


>gi|225579152 insulin-like growth factor binding protein, acid
           labile subunit isoform 1 precursor [Homo sapiens]
          Length = 643

 Score = 33.1 bits (74), Expect = 1.6
 Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 5/69 (7%)

Query: 40  SQLRRIEDALDDSIGDVWDFNLDPIALKLLPYEQ----SSLLELIKTENKVLNKVITVYA 95
           ++L R+ED L + +G +WD NL   +L +LP        SL EL+   N++      +++
Sbjct: 194 NRLSRLEDGLFEGLGSLWDLNLGWNSLAVLPDAAFRGLGSLRELVLAGNRLAYLQPALFS 253

Query: 96  ALCCEIKKL 104
            L  E+++L
Sbjct: 254 GL-AELREL 261


>gi|4826772 insulin-like growth factor binding protein, acid labile
           subunit isoform 2 precursor [Homo sapiens]
          Length = 605

 Score = 33.1 bits (74), Expect = 1.6
 Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 5/69 (7%)

Query: 40  SQLRRIEDALDDSIGDVWDFNLDPIALKLLPYEQ----SSLLELIKTENKVLNKVITVYA 95
           ++L R+ED L + +G +WD NL   +L +LP        SL EL+   N++      +++
Sbjct: 156 NRLSRLEDGLFEGLGSLWDLNLGWNSLAVLPDAAFRGLGSLRELVLAGNRLAYLQPALFS 215

Query: 96  ALCCEIKKL 104
            L  E+++L
Sbjct: 216 GL-AELREL 223


>gi|224809478 retinoic acid induced 14 isoform d [Homo sapiens]
          Length = 983

 Score = 32.7 bits (73), Expect = 2.1
 Identities = 57/250 (22%), Positives = 94/250 (37%), Gaps = 41/250 (16%)

Query: 73  QSSLLELIKTENKVLNKVITVYAALCCEIKKLKYEAETKFYNGLLFYGEGATDASMVEGD 132
           +SS   +I+  NK    +   Y     EI KLK   +++             +AS    D
Sbjct: 583 KSSYCSVIENMNKEKAFLFEKYQEAQEEIMKLKDTLKSQM----------TQEASDEAED 632

Query: 133 CQIQMGRFISFLQELSCFVTRCYEVVM---------NVVHQLAALYISNKIAPKIIETTG 183
            +  M R I  L +    +++ Y+              +  + A YI      K+++ T 
Sbjct: 633 MKEAMNRMIDELNKQVSELSQLYKEAQAELEDYRKRKSLEDVTAEYIHKAEHEKLMQLTN 692

Query: 184 VHFQTMYEHLGEL-------LTVLLTLDEIID----NHITLKDHWTMYKRLLKSVHHNPS 232
           V      + L E+       L  L  L +++D    N +++ +H  +   L  +      
Sbjct: 693 VSRAKAEDALSEMKSQYSKVLNELTQLKQLVDAQKENSVSITEHLQVITTLRTAAKEMEE 752

Query: 233 KFGIQEEKLKPFEKFLLKLEGQLL-------DGMIFQACIEQQFDSLNGGVSV----SKN 281
           K    +E L   E  + KLE QLL       D M+ ++  E+   SL   VSV     K 
Sbjct: 753 KISNLKEHLASKEVEVAKLEKQLLEEKAAMTDAMVPRSSYEKLQSSLESEVSVLASKLKE 812

Query: 282 STFAEEFAHS 291
           S   +E  HS
Sbjct: 813 SVKEKEKVHS 822


>gi|224809476 retinoic acid induced 14 isoform c [Homo sapiens]
          Length = 972

 Score = 32.7 bits (73), Expect = 2.1
 Identities = 57/250 (22%), Positives = 94/250 (37%), Gaps = 41/250 (16%)

Query: 73  QSSLLELIKTENKVLNKVITVYAALCCEIKKLKYEAETKFYNGLLFYGEGATDASMVEGD 132
           +SS   +I+  NK    +   Y     EI KLK   +++             +AS    D
Sbjct: 572 KSSYCSVIENMNKEKAFLFEKYQEAQEEIMKLKDTLKSQM----------TQEASDEAED 621

Query: 133 CQIQMGRFISFLQELSCFVTRCYEVVM---------NVVHQLAALYISNKIAPKIIETTG 183
            +  M R I  L +    +++ Y+              +  + A YI      K+++ T 
Sbjct: 622 MKEAMNRMIDELNKQVSELSQLYKEAQAELEDYRKRKSLEDVTAEYIHKAEHEKLMQLTN 681

Query: 184 VHFQTMYEHLGEL-------LTVLLTLDEIID----NHITLKDHWTMYKRLLKSVHHNPS 232
           V      + L E+       L  L  L +++D    N +++ +H  +   L  +      
Sbjct: 682 VSRAKAEDALSEMKSQYSKVLNELTQLKQLVDAQKENSVSITEHLQVITTLRTAAKEMEE 741

Query: 233 KFGIQEEKLKPFEKFLLKLEGQLL-------DGMIFQACIEQQFDSLNGGVSV----SKN 281
           K    +E L   E  + KLE QLL       D M+ ++  E+   SL   VSV     K 
Sbjct: 742 KISNLKEHLASKEVEVAKLEKQLLEEKAAMTDAMVPRSSYEKLQSSLESEVSVLASKLKE 801

Query: 282 STFAEEFAHS 291
           S   +E  HS
Sbjct: 802 SVKEKEKVHS 811


>gi|224809474 retinoic acid induced 14 isoform b [Homo sapiens]
          Length = 951

 Score = 32.7 bits (73), Expect = 2.1
 Identities = 57/250 (22%), Positives = 94/250 (37%), Gaps = 41/250 (16%)

Query: 73  QSSLLELIKTENKVLNKVITVYAALCCEIKKLKYEAETKFYNGLLFYGEGATDASMVEGD 132
           +SS   +I+  NK    +   Y     EI KLK   +++             +AS    D
Sbjct: 551 KSSYCSVIENMNKEKAFLFEKYQEAQEEIMKLKDTLKSQM----------TQEASDEAED 600

Query: 133 CQIQMGRFISFLQELSCFVTRCYEVVM---------NVVHQLAALYISNKIAPKIIETTG 183
            +  M R I  L +    +++ Y+              +  + A YI      K+++ T 
Sbjct: 601 MKEAMNRMIDELNKQVSELSQLYKEAQAELEDYRKRKSLEDVTAEYIHKAEHEKLMQLTN 660

Query: 184 VHFQTMYEHLGEL-------LTVLLTLDEIID----NHITLKDHWTMYKRLLKSVHHNPS 232
           V      + L E+       L  L  L +++D    N +++ +H  +   L  +      
Sbjct: 661 VSRAKAEDALSEMKSQYSKVLNELTQLKQLVDAQKENSVSITEHLQVITTLRTAAKEMEE 720

Query: 233 KFGIQEEKLKPFEKFLLKLEGQLL-------DGMIFQACIEQQFDSLNGGVSV----SKN 281
           K    +E L   E  + KLE QLL       D M+ ++  E+   SL   VSV     K 
Sbjct: 721 KISNLKEHLASKEVEVAKLEKQLLEEKAAMTDAMVPRSSYEKLQSSLESEVSVLASKLKE 780

Query: 282 STFAEEFAHS 291
           S   +E  HS
Sbjct: 781 SVKEKEKVHS 790


>gi|224809472 retinoic acid induced 14 isoform a [Homo sapiens]
          Length = 980

 Score = 32.7 bits (73), Expect = 2.1
 Identities = 57/250 (22%), Positives = 94/250 (37%), Gaps = 41/250 (16%)

Query: 73  QSSLLELIKTENKVLNKVITVYAALCCEIKKLKYEAETKFYNGLLFYGEGATDASMVEGD 132
           +SS   +I+  NK    +   Y     EI KLK   +++             +AS    D
Sbjct: 580 KSSYCSVIENMNKEKAFLFEKYQEAQEEIMKLKDTLKSQM----------TQEASDEAED 629

Query: 133 CQIQMGRFISFLQELSCFVTRCYEVVM---------NVVHQLAALYISNKIAPKIIETTG 183
            +  M R I  L +    +++ Y+              +  + A YI      K+++ T 
Sbjct: 630 MKEAMNRMIDELNKQVSELSQLYKEAQAELEDYRKRKSLEDVTAEYIHKAEHEKLMQLTN 689

Query: 184 VHFQTMYEHLGEL-------LTVLLTLDEIID----NHITLKDHWTMYKRLLKSVHHNPS 232
           V      + L E+       L  L  L +++D    N +++ +H  +   L  +      
Sbjct: 690 VSRAKAEDALSEMKSQYSKVLNELTQLKQLVDAQKENSVSITEHLQVITTLRTAAKEMEE 749

Query: 233 KFGIQEEKLKPFEKFLLKLEGQLL-------DGMIFQACIEQQFDSLNGGVSV----SKN 281
           K    +E L   E  + KLE QLL       D M+ ++  E+   SL   VSV     K 
Sbjct: 750 KISNLKEHLASKEVEVAKLEKQLLEEKAAMTDAMVPRSSYEKLQSSLESEVSVLASKLKE 809

Query: 282 STFAEEFAHS 291
           S   +E  HS
Sbjct: 810 SVKEKEKVHS 819


>gi|224809470 retinoic acid induced 14 isoform a [Homo sapiens]
          Length = 980

 Score = 32.7 bits (73), Expect = 2.1
 Identities = 57/250 (22%), Positives = 94/250 (37%), Gaps = 41/250 (16%)

Query: 73  QSSLLELIKTENKVLNKVITVYAALCCEIKKLKYEAETKFYNGLLFYGEGATDASMVEGD 132
           +SS   +I+  NK    +   Y     EI KLK   +++             +AS    D
Sbjct: 580 KSSYCSVIENMNKEKAFLFEKYQEAQEEIMKLKDTLKSQM----------TQEASDEAED 629

Query: 133 CQIQMGRFISFLQELSCFVTRCYEVVM---------NVVHQLAALYISNKIAPKIIETTG 183
            +  M R I  L +    +++ Y+              +  + A YI      K+++ T 
Sbjct: 630 MKEAMNRMIDELNKQVSELSQLYKEAQAELEDYRKRKSLEDVTAEYIHKAEHEKLMQLTN 689

Query: 184 VHFQTMYEHLGEL-------LTVLLTLDEIID----NHITLKDHWTMYKRLLKSVHHNPS 232
           V      + L E+       L  L  L +++D    N +++ +H  +   L  +      
Sbjct: 690 VSRAKAEDALSEMKSQYSKVLNELTQLKQLVDAQKENSVSITEHLQVITTLRTAAKEMEE 749

Query: 233 KFGIQEEKLKPFEKFLLKLEGQLL-------DGMIFQACIEQQFDSLNGGVSV----SKN 281
           K    +E L   E  + KLE QLL       D M+ ++  E+   SL   VSV     K 
Sbjct: 750 KISNLKEHLASKEVEVAKLEKQLLEEKAAMTDAMVPRSSYEKLQSSLESEVSVLASKLKE 809

Query: 282 STFAEEFAHS 291
           S   +E  HS
Sbjct: 810 SVKEKEKVHS 819


>gi|224809468 retinoic acid induced 14 isoform a [Homo sapiens]
          Length = 980

 Score = 32.7 bits (73), Expect = 2.1
 Identities = 57/250 (22%), Positives = 94/250 (37%), Gaps = 41/250 (16%)

Query: 73  QSSLLELIKTENKVLNKVITVYAALCCEIKKLKYEAETKFYNGLLFYGEGATDASMVEGD 132
           +SS   +I+  NK    +   Y     EI KLK   +++             +AS    D
Sbjct: 580 KSSYCSVIENMNKEKAFLFEKYQEAQEEIMKLKDTLKSQM----------TQEASDEAED 629

Query: 133 CQIQMGRFISFLQELSCFVTRCYEVVM---------NVVHQLAALYISNKIAPKIIETTG 183
            +  M R I  L +    +++ Y+              +  + A YI      K+++ T 
Sbjct: 630 MKEAMNRMIDELNKQVSELSQLYKEAQAELEDYRKRKSLEDVTAEYIHKAEHEKLMQLTN 689

Query: 184 VHFQTMYEHLGEL-------LTVLLTLDEIID----NHITLKDHWTMYKRLLKSVHHNPS 232
           V      + L E+       L  L  L +++D    N +++ +H  +   L  +      
Sbjct: 690 VSRAKAEDALSEMKSQYSKVLNELTQLKQLVDAQKENSVSITEHLQVITTLRTAAKEMEE 749

Query: 233 KFGIQEEKLKPFEKFLLKLEGQLL-------DGMIFQACIEQQFDSLNGGVSV----SKN 281
           K    +E L   E  + KLE QLL       D M+ ++  E+   SL   VSV     K 
Sbjct: 750 KISNLKEHLASKEVEVAKLEKQLLEEKAAMTDAMVPRSSYEKLQSSLESEVSVLASKLKE 809

Query: 282 STFAEEFAHS 291
           S   +E  HS
Sbjct: 810 SVKEKEKVHS 819


>gi|148806872 lupus brain antigen 1 [Homo sapiens]
          Length = 2375

 Score = 32.0 bits (71), Expect = 3.6
 Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 13/85 (15%)

Query: 526  DKKYSEQRLDVLSALVLAENTLNGPSTKQRR--LIVSLALS----VGTQMKTFKDEELFP 579
            D+   E R  VL+ ++  +        K RR  L+VSL +S    VGTQM+  ++E   P
Sbjct: 2101 DELALEDRDHVLATILSQKQRKASIQRKLRRACLVVSLCISWRRRVGTQMERVREEAREP 2160

Query: 580  LQVVMKKLDLISELRERVQTQCDCC 604
                 KK D+        +TQCD C
Sbjct: 2161 RAGNFKKADV-------DRTQCDLC 2178


>gi|194097392 Golgi autoantigen, golgin subfamily a, 2 [Homo sapiens]
          Length = 1002

 Score = 31.6 bits (70), Expect = 4.6
 Identities = 20/65 (30%), Positives = 32/65 (49%)

Query: 1089 KQQNVQSASQDEKLLQTMNLTQKRLDVYLQEFELLYFSLSSARIFFRADKTAAEENQEKK 1148
            +QQ  Q  +  E   Q +  TQ+RL+   Q+ + L   LS        D    EE ++++
Sbjct: 651  QQQEAQGKAVAEMARQELQETQERLEAATQQNQQLRAQLSLMAHPGEGDGLDREEEEDEE 710

Query: 1149 EKEEE 1153
            E+EEE
Sbjct: 711  EEEEE 715


>gi|4885261 growth differentiation factor 9 precursor [Homo sapiens]
          Length = 454

 Score = 31.6 bits (70), Expect = 4.6
 Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 4/82 (4%)

Query: 771 LPSQTLEQGLDVLEIMRNIHIFVSRYLYNLNNQIFIERTSNNKHLNTINIRHIANSIRTH 830
           LPS  L   LD +  +   H+  S  LYN+NN +    +S  K +  + I+   +S RT 
Sbjct: 135 LPSVELLFNLDRITTVE--HLLKSVLLYNINNSVSF--SSAVKCVCNLMIKEPKSSSRTL 190

Query: 831 GTGIMNTTVNFTYQFLKKKFYI 852
           G    + T N  ++F KK  +I
Sbjct: 191 GRAPYSFTFNSQFEFGKKHKWI 212


>gi|50897852 coiled-coil domain containing 88A isoform 2 [Homo
           sapiens]
          Length = 1843

 Score = 31.6 bits (70), Expect = 4.6
 Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 15/87 (17%)

Query: 27  QLKNYGKFLEEYTSQLRRIEDALDD------SIGDVWDFNLDPIALKLLPYEQSSLLELI 80
           QL+   K LE+ TSQL + +  L+          ++ D  L+         E +  +  +
Sbjct: 812 QLEKENKSLEQETSQLEKDKKQLEKENKRLRQQAEIKDTTLE---------ENNVKIGNL 862

Query: 81  KTENKVLNKVITVYAALCCEIKKLKYE 107
           + ENK L+K I +Y   C  +K+L+ E
Sbjct: 863 EKENKTLSKEIGIYKESCVRLKELEKE 889


>gi|208022632 coiled-coil domain containing 88A isoform 1 [Homo
           sapiens]
          Length = 1870

 Score = 31.6 bits (70), Expect = 4.6
 Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 15/87 (17%)

Query: 27  QLKNYGKFLEEYTSQLRRIEDALDD------SIGDVWDFNLDPIALKLLPYEQSSLLELI 80
           QL+   K LE+ TSQL + +  L+          ++ D  L+         E +  +  +
Sbjct: 812 QLEKENKSLEQETSQLEKDKKQLEKENKRLRQQAEIKDTTLE---------ENNVKIGNL 862

Query: 81  KTENKVLNKVITVYAALCCEIKKLKYE 107
           + ENK L+K I +Y   C  +K+L+ E
Sbjct: 863 EKENKTLSKEIGIYKESCVRLKELEKE 889


>gi|19924131 RAD50 homolog isoform 2 [Homo sapiens]
          Length = 1173

 Score = 31.2 bits (69), Expect = 6.1
 Identities = 30/142 (21%), Positives = 61/142 (42%), Gaps = 17/142 (11%)

Query: 1017 VPPLTLNFVEHSISCKEKLNKKNKIGAAFTDDGFAMGVAYILKLLDQYREFDSLHWFQSV 1076
            V PL     +     +E +NKKN       D           KL D   +  ++H +   
Sbjct: 773  VSPLETTLEKFQQEKEELINKKNTSNKIAQD-----------KLNDIKEKVKNIHGYMKD 821

Query: 1077 REKYLKEIRAVAKQQNVQSASQDEKLLQTMNLTQKRLDVYLQEFELLYFSLSSARI---F 1133
             E Y+++ +   K+Q     ++  K++  ++  +K  +   ++  L+   + + +I   +
Sbjct: 822  IENYIQDGKDDYKKQK---ETELNKVIAQLSECEKHKEKINEDMRLMRQDIDTQKIQERW 878

Query: 1134 FRADKTAAEENQEKKEKEEETK 1155
             + + T  + N+E KE EEE K
Sbjct: 879  LQDNLTLRKRNEELKEVEEERK 900


>gi|19924129 RAD50 homolog isoform 1 [Homo sapiens]
          Length = 1312

 Score = 31.2 bits (69), Expect = 6.1
 Identities = 30/142 (21%), Positives = 61/142 (42%), Gaps = 17/142 (11%)

Query: 1017 VPPLTLNFVEHSISCKEKLNKKNKIGAAFTDDGFAMGVAYILKLLDQYREFDSLHWFQSV 1076
            V PL     +     +E +NKKN       D           KL D   +  ++H +   
Sbjct: 912  VSPLETTLEKFQQEKEELINKKNTSNKIAQD-----------KLNDIKEKVKNIHGYMKD 960

Query: 1077 REKYLKEIRAVAKQQNVQSASQDEKLLQTMNLTQKRLDVYLQEFELLYFSLSSARI---F 1133
             E Y+++ +   K+Q     ++  K++  ++  +K  +   ++  L+   + + +I   +
Sbjct: 961  IENYIQDGKDDYKKQK---ETELNKVIAQLSECEKHKEKINEDMRLMRQDIDTQKIQERW 1017

Query: 1134 FRADKTAAEENQEKKEKEEETK 1155
             + + T  + N+E KE EEE K
Sbjct: 1018 LQDNLTLRKRNEELKEVEEERK 1039


>gi|52851391 mediator complex subunit 28 [Homo sapiens]
          Length = 178

 Score = 31.2 bits (69), Expect = 6.1
 Identities = 16/88 (18%), Positives = 36/88 (40%), Gaps = 4/88 (4%)

Query: 145 QELSCFVTRCYEVVMNVVHQLAALYISNKIAPKIIETTGVHFQTMYEHLGELLTVLLTLD 204
           +E+   V +C +  +++  Q    ++  ++   + +      Q + E + EL   L   D
Sbjct: 71  EEIRTGVDQCIQKFLDIARQTECFFLQKRLQLSVQKPE----QVIKEDVSELRNELQRKD 126

Query: 205 EIIDNHITLKDHWTMYKRLLKSVHHNPS 232
            ++  H+T   HW      +   H  P+
Sbjct: 127 ALVQKHLTKLRHWQQVLEDINVQHKKPA 154


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.136    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,237,701
Number of Sequences: 37866
Number of extensions: 1584269
Number of successful extensions: 5413
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 5395
Number of HSP's gapped (non-prelim): 29
length of query: 1173
length of database: 18,247,518
effective HSP length: 113
effective length of query: 1060
effective length of database: 13,968,660
effective search space: 14806779600
effective search space used: 14806779600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 68 (30.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.