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Search of human proteins with 38348384
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|38348384 hypothetical protein LOC374986 [Homo sapiens]
(632 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|38348384 hypothetical protein LOC374986 [Homo sapiens] 1261 0.0
gi|33300666 hypothetical protein LOC84895 [Homo sapiens] 400 e-111
gi|169658378 trinucleotide repeat containing 18 [Homo sapiens] 33 0.80
gi|162329612 phosphodiesterase 4A isoform 3 [Homo sapiens] 32 1.8
gi|162329610 phosphodiesterase 4A isoform 2 [Homo sapiens] 32 1.8
gi|162329608 phosphodiesterase 4A isoform 1 [Homo sapiens] 32 1.8
gi|5453862 phosphodiesterase 4A isoform 4 [Homo sapiens] 32 1.8
gi|47778943 syntaxin 16 isoform a [Homo sapiens] 32 1.8
gi|60498973 myelin transcription factor 1-like [Homo sapiens] 32 1.8
gi|198041692 syntaxin 16 isoform d [Homo sapiens] 32 1.8
gi|198041688 syntaxin 16 isoform c [Homo sapiens] 32 1.8
gi|34447229 syntaxin 16 isoform b [Homo sapiens] 32 1.8
gi|22212925 nuclear transcription factor, X-box binding 1 isofor... 31 3.0
gi|239751568 PREDICTED: hypothetical protein [Homo sapiens] 31 4.0
gi|114155142 nuclear pore complex-associated protein TPR [Homo s... 30 5.2
gi|38570142 membrane protein, palmitoylated 5 [Homo sapiens] 30 5.2
gi|239744133 PREDICTED: hypothetical protein [Homo sapiens] 30 6.8
gi|58535453 CDK5 regulatory subunit associated protein 2 isoform... 30 8.8
gi|58535451 CDK5 regulatory subunit associated protein 2 isoform... 30 8.8
>gi|38348384 hypothetical protein LOC374986 [Homo sapiens]
Length = 632
Score = 1261 bits (3264), Expect = 0.0
Identities = 632/632 (100%), Positives = 632/632 (100%)
Query: 1 MSDCCSAPGISWEAGVGRPAVPGLELQIRRGAMSEETVSESQFSLKTAALRVFDLPLTWY 60
MSDCCSAPGISWEAGVGRPAVPGLELQIRRGAMSEETVSESQFSLKTAALRVFDLPLTWY
Sbjct: 1 MSDCCSAPGISWEAGVGRPAVPGLELQIRRGAMSEETVSESQFSLKTAALRVFDLPLTWY 60
Query: 61 YSLSQIKFSPVAKKLFVVTAVSAISVIFLAHHFKRKRGKKKGKILPWEPEHLILEYTKRA 120
YSLSQIKFSPVAKKLFVVTAVSAISVIFLAHHFKRKRGKKKGKILPWEPEHLILEYTKRA
Sbjct: 61 YSLSQIKFSPVAKKLFVVTAVSAISVIFLAHHFKRKRGKKKGKILPWEPEHLILEYTKRA 120
Query: 121 ASDKGSSCSSSRQNLTLSLSSTKDKGSQVCNYANGGLFSKYSGSAQSLASVQSVNSCHSC 180
ASDKGSSCSSSRQNLTLSLSSTKDKGSQVCNYANGGLFSKYSGSAQSLASVQSVNSCHSC
Sbjct: 121 ASDKGSSCSSSRQNLTLSLSSTKDKGSQVCNYANGGLFSKYSGSAQSLASVQSVNSCHSC 180
Query: 181 ACGNSNSWDKADEDDIKLVNIPVTTPENLYLMGMELFEEALRRWEQALTFRNRQAEDEAC 240
ACGNSNSWDKADEDDIKLVNIPVTTPENLYLMGMELFEEALRRWEQALTFRNRQAEDEAC
Sbjct: 181 ACGNSNSWDKADEDDIKLVNIPVTTPENLYLMGMELFEEALRRWEQALTFRNRQAEDEAC 240
Query: 241 GSIKLGAGDAIAEENVDDIISTEFIHKLEALLQRAYRLQEEFEATLGASDPNSLADDIDK 300
GSIKLGAGDAIAEENVDDIISTEFIHKLEALLQRAYRLQEEFEATLGASDPNSLADDIDK
Sbjct: 241 GSIKLGAGDAIAEENVDDIISTEFIHKLEALLQRAYRLQEEFEATLGASDPNSLADDIDK 300
Query: 301 DTDITMKGNVEDFGLRDTLSIASTDSFASAAELAEHREVRHTYSLESLCHCPFYEEAMHL 360
DTDITMKGNVEDFGLRDTLSIASTDSFASAAELAEHREVRHTYSLESLCHCPFYEEAMHL
Sbjct: 301 DTDITMKGNVEDFGLRDTLSIASTDSFASAAELAEHREVRHTYSLESLCHCPFYEEAMHL 360
Query: 361 VEEGKIYSRVLRTEMLECLGDSDFLAKLHCIRQAFQVILSESANRIFLAESGRKILSALI 420
VEEGKIYSRVLRTEMLECLGDSDFLAKLHCIRQAFQVILSESANRIFLAESGRKILSALI
Sbjct: 361 VEEGKIYSRVLRTEMLECLGDSDFLAKLHCIRQAFQVILSESANRIFLAESGRKILSALI 420
Query: 421 VKARKNPKKFEDVFDEMIYFLEQTDHWGSTEMELAARGVKNLNFYDVVLDFILMDSFEDL 480
VKARKNPKKFEDVFDEMIYFLEQTDHWGSTEMELAARGVKNLNFYDVVLDFILMDSFEDL
Sbjct: 421 VKARKNPKKFEDVFDEMIYFLEQTDHWGSTEMELAARGVKNLNFYDVVLDFILMDSFEDL 480
Query: 481 ENPPTSIQNVVNNRWLNSSFKETAVASSCWSVLKQKRQQMKIPDGFFAHFYAICEHISPV 540
ENPPTSIQNVVNNRWLNSSFKETAVASSCWSVLKQKRQQMKIPDGFFAHFYAICEHISPV
Sbjct: 481 ENPPTSIQNVVNNRWLNSSFKETAVASSCWSVLKQKRQQMKIPDGFFAHFYAICEHISPV 540
Query: 541 LAWGFLGPRNSLYDLCCFFKNQVLLFLKDIFDFEKVRYSSTETLAEDLMQLLIRRTELLM 600
LAWGFLGPRNSLYDLCCFFKNQVLLFLKDIFDFEKVRYSSTETLAEDLMQLLIRRTELLM
Sbjct: 541 LAWGFLGPRNSLYDLCCFFKNQVLLFLKDIFDFEKVRYSSTETLAEDLMQLLIRRTELLM 600
Query: 601 AYLEADALRHTSSCLSSHGHVMSTGLLEAKVQ 632
AYLEADALRHTSSCLSSHGHVMSTGLLEAKVQ
Sbjct: 601 AYLEADALRHTSSCLSSHGHVMSTGLLEAKVQ 632
>gi|33300666 hypothetical protein LOC84895 [Homo sapiens]
Length = 593
Score = 400 bits (1027), Expect = e-111
Identities = 233/592 (39%), Positives = 353/592 (59%), Gaps = 48/592 (8%)
Query: 39 SESQFSLKTAALRVFDLPLTWYYSL-----SQIKFSPVAKKLFVVTAVSAISVIFLAHHF 93
+E ++ A+ V ++P+ Y + SQ++ +P +K+ TA+ +++ AH
Sbjct: 6 AEGTSMIQALAMTVAEIPVFLYTTFGQSAFSQLRLTPGLRKVLFATALGTVALALAAHQL 65
Query: 94 KRKRGKKK-------GKILPWEPEHLIL----EYTKRAASDKGSSCSSSRQNLTLSLSST 142
KR+R +KK G+ L P ++L K+ S + SS+ N TLS S+
Sbjct: 66 KRRRRRKKQVGPEMGGEQLGTVPLPILLARKVPSVKKGYSSRRVQSPSSKSNDTLSGISS 125
Query: 143 KDKGSQVCNYANGGLFSKYSGSAQSLASVQSVNSCH-SCACGNSNSWDKADEDDIKLVNI 201
+ SK+SGS+ S+AS+ +VNS + AC S WD ++ +
Sbjct: 126 IEP-------------SKHSGSSHSVASMMAVNSSSPTAAC--SGLWDARGMEE--SLTT 168
Query: 202 PVTTPENLYLMGMELFEEALRRWEQALTFRNRQAEDEACGSIKLGAGDAIAEENVDDIIS 261
E+LY+ GMELFEEAL++WEQAL+ R GS + E + +S
Sbjct: 169 SDGNAESLYMQGMELFEEALQKWEQALSVGQRGDS----GSTPMPRDGLRNPETASEPLS 224
Query: 262 ------TEFIHKLEALLQRAYRLQEEFEATLGASDPNSLADDIDKDTDITMKGNVEDFGL 315
EF KLE+LL RAY LQEEF +T A +S+ D+++ + +
Sbjct: 225 EPESQRKEFAEKLESLLHRAYHLQEEFGSTFPA---DSMLLDLERTLMLPLTEGSLRLRA 281
Query: 316 RDTLSIASTDSFASAAELAEHREVRHTYSLESLCHCPFYEEAMHLVEEGKIYSRVLRTEM 375
D S+ S DSF SA EL E + Y + YEEA+ LV+EG++ R LRTE+
Sbjct: 282 DDEDSLTSEDSFFSATELFESLQT-GDYPIPLSRPAAAYEEALQLVKEGRVPCRTLRTEL 340
Query: 376 LECLGDSDFLAKLHCIRQAFQVILSESANRIFLAESGRKILSALIVKARKNPKKFEDVFD 435
L C D DFLAKLHC+RQAF+ +L + +N++F + GR++++ L+ KA K+PK F + ++
Sbjct: 341 LGCYSDQDFLAKLHCVRQAFEGLLEDKSNQLFFGKVGRQMVTGLMTKAEKSPKGFLESYE 400
Query: 436 EMIYFLEQTDHWGSTEMELAARGVKNLNFYDVVLDFILMDSFEDLENPPTSIQNVVNNRW 495
EM+ + + + W +T +EL RGV ++F+D+VLDFILMD+FEDLENPP S+ V+ NRW
Sbjct: 401 EMLSYALRPETWATTRLELEGRGVVCMSFFDIVLDFILMDAFEDLENPPASVLAVLRNRW 460
Query: 496 LNSSFKETAVASSCWSVLKQKRQQMKIPDGFFAHFYAICEHISPVLAWGFLGPRNSLYDL 555
L+ SFKETA+A++CWSVLK KR+ + +PDGF +HFY++ EH+SPVLA+GFLGP+ L ++
Sbjct: 461 LSDSFKETALATACWSVLKAKRRLLMVPDGFISHFYSVSEHVSPVLAFGFLGPKPQLAEV 520
Query: 556 CCFFKNQVLLFLKDIFDFEKVRYSSTETLAEDLMQLLIRRTELLMAYLEADA 607
C FFK+Q++ +L+D+FD + VRY+S LA+D++QL RR+E+L+ YL A
Sbjct: 521 CAFFKHQIVQYLRDMFDLDNVRYTSLPALADDILQLSRRRSEILLGYLGVPA 572
>gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]
Length = 2968
Score = 33.1 bits (74), Expect = 0.80
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
Query: 117 TKRAASDKGSSCSSSRQNLTLSLSSTKDKGSQVCNYANGGLFSKYSGSAQSLASVQSVNS 176
+ RAAS SS SSS + + S SS+ S + S S S+ S +S S +S
Sbjct: 2606 SSRAASPASSSSSSSSSSSSSSSSSSSSSSSSSSS-------SSSSSSSSSSSSSSSSSS 2658
Query: 177 CHSCACGNSNSWDKADED 194
S + +S+S DED
Sbjct: 2659 SSSSSSSSSSSSSTTDED 2676
>gi|162329612 phosphodiesterase 4A isoform 3 [Homo sapiens]
Length = 825
Score = 32.0 bits (71), Expect = 1.8
Identities = 25/109 (22%), Positives = 52/109 (47%), Gaps = 9/109 (8%)
Query: 189 DKADEDDIKLVNIPVTTPENLYLMGMELFEEALRRWEQALTFRNRQAEDEACGSIKLGAG 248
++ +E++I + IP T E L G+ EEAL + + + A++ S+++ A
Sbjct: 653 EEEEEEEISMAQIPCTAQEALTAQGLSGVEEAL---DATIAWEASPAQE----SLEVMAQ 705
Query: 249 DAIAEENVDDIISTEFIHKLEA--LLQRAYRLQEEFEATLGASDPNSLA 295
+A E ++ + T+ + + + +EEF + S P++LA
Sbjct: 706 EASLEAELEAVYLTQQAQSTGSAPVAPDEFSSREEFVVAVSHSSPSALA 754
>gi|162329610 phosphodiesterase 4A isoform 2 [Homo sapiens]
Length = 860
Score = 32.0 bits (71), Expect = 1.8
Identities = 25/109 (22%), Positives = 52/109 (47%), Gaps = 9/109 (8%)
Query: 189 DKADEDDIKLVNIPVTTPENLYLMGMELFEEALRRWEQALTFRNRQAEDEACGSIKLGAG 248
++ +E++I + IP T E L G+ EEAL + + + A++ S+++ A
Sbjct: 688 EEEEEEEISMAQIPCTAQEALTAQGLSGVEEAL---DATIAWEASPAQE----SLEVMAQ 740
Query: 249 DAIAEENVDDIISTEFIHKLEA--LLQRAYRLQEEFEATLGASDPNSLA 295
+A E ++ + T+ + + + +EEF + S P++LA
Sbjct: 741 EASLEAELEAVYLTQQAQSTGSAPVAPDEFSSREEFVVAVSHSSPSALA 789
>gi|162329608 phosphodiesterase 4A isoform 1 [Homo sapiens]
Length = 886
Score = 32.0 bits (71), Expect = 1.8
Identities = 25/109 (22%), Positives = 52/109 (47%), Gaps = 9/109 (8%)
Query: 189 DKADEDDIKLVNIPVTTPENLYLMGMELFEEALRRWEQALTFRNRQAEDEACGSIKLGAG 248
++ +E++I + IP T E L G+ EEAL + + + A++ S+++ A
Sbjct: 714 EEEEEEEISMAQIPCTAQEALTAQGLSGVEEAL---DATIAWEASPAQE----SLEVMAQ 766
Query: 249 DAIAEENVDDIISTEFIHKLEA--LLQRAYRLQEEFEATLGASDPNSLA 295
+A E ++ + T+ + + + +EEF + S P++LA
Sbjct: 767 EASLEAELEAVYLTQQAQSTGSAPVAPDEFSSREEFVVAVSHSSPSALA 815
>gi|5453862 phosphodiesterase 4A isoform 4 [Homo sapiens]
Length = 647
Score = 32.0 bits (71), Expect = 1.8
Identities = 25/109 (22%), Positives = 52/109 (47%), Gaps = 9/109 (8%)
Query: 189 DKADEDDIKLVNIPVTTPENLYLMGMELFEEALRRWEQALTFRNRQAEDEACGSIKLGAG 248
++ +E++I + IP T E L G+ EEAL + + + A++ S+++ A
Sbjct: 475 EEEEEEEISMAQIPCTAQEALTAQGLSGVEEAL---DATIAWEASPAQE----SLEVMAQ 527
Query: 249 DAIAEENVDDIISTEFIHKLEA--LLQRAYRLQEEFEATLGASDPNSLA 295
+A E ++ + T+ + + + +EEF + S P++LA
Sbjct: 528 EASLEAELEAVYLTQQAQSTGSAPVAPDEFSSREEFVVAVSHSSPSALA 576
>gi|47778943 syntaxin 16 isoform a [Homo sapiens]
Length = 325
Score = 32.0 bits (71), Expect = 1.8
Identities = 44/175 (25%), Positives = 67/175 (38%), Gaps = 20/175 (11%)
Query: 222 RRWEQALTFRNR---QAEDEACGSIKLGAGDAIAEENVDDIISTEFIHKLEALLQRAYRL 278
+R QAL R R + E G++ A+ E +ST F H L+R
Sbjct: 137 QRAVQALPSRARACSEQEGRLLGNVVASLAQALQE------LSTSFRHAQSGYLKRMKNR 190
Query: 279 QEEFEATLGASDPNSLADDIDKDTDITMKGNVEDFGLRDTLSIASTDSFASAAELAEHRE 338
+E + S P L DD D +T + +G ED + + E E RE
Sbjct: 191 EERSQHFFDTSVP--LMDDGDDNT-LYHRGFTED-------QLVLVEQNTLMVEERE-RE 239
Query: 339 VRHTYSLESLCHCPFYEEAMHLVEEGKIYSRVLRTEMLECLGDSDFLAKLHCIRQ 393
+R S + F + +VE+G + R+ C+ D L +LH Q
Sbjct: 240 IRQIVQSISDLNEIFRDLGAMIVEQGTVLDRIDYNVEQSCIKTEDGLKQLHKAEQ 294
>gi|60498973 myelin transcription factor 1-like [Homo sapiens]
Length = 1184
Score = 32.0 bits (71), Expect = 1.8
Identities = 32/143 (22%), Positives = 64/143 (44%), Gaps = 10/143 (6%)
Query: 254 ENVDDIISTEFIHKLEALLQRAYRLQEEFEATLGASDPNSLADDIDKDTDITMKG----N 309
+N D++++ ++ + AYR + E E + ++ NSL DD DK+ ++ K +
Sbjct: 195 DNYDELVAKSLLNLGKIAEDAAYRARTESE--MNSNTSNSLEDDSDKNENLGRKSELSLD 252
Query: 310 VEDFGLRDTLSIASTDSFASAAELAEHREVRHTYSLESLCHCPFYEEAMHLVEEGKIYSR 369
++ +R+T+ + L+E+ R+ S M+ V GK +
Sbjct: 253 LDSDVVRETVDSLKLLAQGHGVVLSENMNDRNYADSMSQQD----SRNMNYVMLGKPMNN 308
Query: 370 VLRTEMLECLGDSDFLAKLHCIR 392
L +M+E + L+ L C+R
Sbjct: 309 GLMEKMVEESDEEVCLSSLECLR 331
>gi|198041692 syntaxin 16 isoform d [Homo sapiens]
Length = 308
Score = 32.0 bits (71), Expect = 1.8
Identities = 44/175 (25%), Positives = 67/175 (38%), Gaps = 20/175 (11%)
Query: 222 RRWEQALTFRNR---QAEDEACGSIKLGAGDAIAEENVDDIISTEFIHKLEALLQRAYRL 278
+R QAL R R + E G++ A+ E +ST F H L+R
Sbjct: 120 QRAVQALPSRARACSEQEGRLLGNVVASLAQALQE------LSTSFRHAQSGYLKRMKNR 173
Query: 279 QEEFEATLGASDPNSLADDIDKDTDITMKGNVEDFGLRDTLSIASTDSFASAAELAEHRE 338
+E + S P L DD D +T + +G ED + + E E RE
Sbjct: 174 EERSQHFFDTSVP--LMDDGDDNT-LYHRGFTED-------QLVLVEQNTLMVEERE-RE 222
Query: 339 VRHTYSLESLCHCPFYEEAMHLVEEGKIYSRVLRTEMLECLGDSDFLAKLHCIRQ 393
+R S + F + +VE+G + R+ C+ D L +LH Q
Sbjct: 223 IRQIVQSISDLNEIFRDLGAMIVEQGTVLDRIDYNVEQSCIKTEDGLKQLHKAEQ 277
>gi|198041688 syntaxin 16 isoform c [Homo sapiens]
Length = 321
Score = 32.0 bits (71), Expect = 1.8
Identities = 44/175 (25%), Positives = 67/175 (38%), Gaps = 20/175 (11%)
Query: 222 RRWEQALTFRNR---QAEDEACGSIKLGAGDAIAEENVDDIISTEFIHKLEALLQRAYRL 278
+R QAL R R + E G++ A+ E +ST F H L+R
Sbjct: 133 QRAVQALPSRARACSEQEGRLLGNVVASLAQALQE------LSTSFRHAQSGYLKRMKNR 186
Query: 279 QEEFEATLGASDPNSLADDIDKDTDITMKGNVEDFGLRDTLSIASTDSFASAAELAEHRE 338
+E + S P L DD D +T + +G ED + + E E RE
Sbjct: 187 EERSQHFFDTSVP--LMDDGDDNT-LYHRGFTED-------QLVLVEQNTLMVEERE-RE 235
Query: 339 VRHTYSLESLCHCPFYEEAMHLVEEGKIYSRVLRTEMLECLGDSDFLAKLHCIRQ 393
+R S + F + +VE+G + R+ C+ D L +LH Q
Sbjct: 236 IRQIVQSISDLNEIFRDLGAMIVEQGTVLDRIDYNVEQSCIKTEDGLKQLHKAEQ 290
>gi|34447229 syntaxin 16 isoform b [Homo sapiens]
Length = 304
Score = 32.0 bits (71), Expect = 1.8
Identities = 44/175 (25%), Positives = 67/175 (38%), Gaps = 20/175 (11%)
Query: 222 RRWEQALTFRNR---QAEDEACGSIKLGAGDAIAEENVDDIISTEFIHKLEALLQRAYRL 278
+R QAL R R + E G++ A+ E +ST F H L+R
Sbjct: 116 QRAVQALPSRARACSEQEGRLLGNVVASLAQALQE------LSTSFRHAQSGYLKRMKNR 169
Query: 279 QEEFEATLGASDPNSLADDIDKDTDITMKGNVEDFGLRDTLSIASTDSFASAAELAEHRE 338
+E + S P L DD D +T + +G ED + + E E RE
Sbjct: 170 EERSQHFFDTSVP--LMDDGDDNT-LYHRGFTED-------QLVLVEQNTLMVEERE-RE 218
Query: 339 VRHTYSLESLCHCPFYEEAMHLVEEGKIYSRVLRTEMLECLGDSDFLAKLHCIRQ 393
+R S + F + +VE+G + R+ C+ D L +LH Q
Sbjct: 219 IRQIVQSISDLNEIFRDLGAMIVEQGTVLDRIDYNVEQSCIKTEDGLKQLHKAEQ 273
>gi|22212925 nuclear transcription factor, X-box binding 1 isoform 2
[Homo sapiens]
Length = 1024
Score = 31.2 bits (69), Expect = 3.0
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 9/79 (11%)
Query: 376 LECLGDSDFLAKLHCIRQAFQVILSESANRIFLAESGRKILSALIVKARKNPKKFEDVFD 435
LEC + L + + +AF + SE ++ + SG K +L ARK+ K DV
Sbjct: 945 LECDEECSALERKKRLAEAFHI--SEDSDPFNIRSSGSKFSDSLKEDARKDLKFVSDVEK 1002
Query: 436 EMIYFLE-------QTDHW 447
EM +E +T HW
Sbjct: 1003 EMETLVEAVNKVEVETSHW 1021
>gi|239751568 PREDICTED: hypothetical protein [Homo sapiens]
Length = 307
Score = 30.8 bits (68), Expect = 4.0
Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 5/88 (5%)
Query: 105 LPWEPEHLILEYTKRAASD-KGSSCSSSRQNLTLSLSSTKDKGSQVCNYANGGLFSKYSG 163
LP P L+ T+ ++ G C SS ++ SL+ G + +NG L G
Sbjct: 222 LPSSPPWLLGGDTESGGNEGDGGKCLSSLKHRNSSLNGLLRLGPK----SNGSLLLNVRG 277
Query: 164 SAQSLASVQSVNSCHSCACGNSNSWDKA 191
L + +SCH +CG KA
Sbjct: 278 PISRLKIPGNCSSCHKASCGIEECGQKA 305
>gi|114155142 nuclear pore complex-associated protein TPR [Homo
sapiens]
Length = 2363
Score = 30.4 bits (67), Expect = 5.2
Identities = 31/129 (24%), Positives = 66/129 (51%), Gaps = 19/129 (14%)
Query: 195 DIKLVNIP--VTTPENLYLMGMELFEEALRR---WEQALTFRNRQAEDEACGSIKLGAGD 249
D++L++ + T NL+L EL + A + +Q L+ N + + + S + G G
Sbjct: 870 DVQLLDTKRQLDTETNLHLNTKELLKNAQKEIATLKQHLS--NMEVQVASQSSQRTGKGQ 927
Query: 250 AIAEENVDDIIS-----TEFIHKLEALLQRAYRLQEEFEATLGASDPNSLADDIDKDTDI 304
+E+VDD++S E ++ L+ L+ + E+++A + SL + ++K+ +
Sbjct: 928 PSNKEDVDDLVSQLRQTEEQVNDLKERLKTSTSNVEQYQAMV-----TSLEESLNKEKQV 982
Query: 305 T--MKGNVE 311
T ++ N+E
Sbjct: 983 TEEVRKNIE 991
>gi|38570142 membrane protein, palmitoylated 5 [Homo sapiens]
Length = 675
Score = 30.4 bits (67), Expect = 5.2
Identities = 27/104 (25%), Positives = 43/104 (41%), Gaps = 18/104 (17%)
Query: 328 ASAAELAEHREVRHTYSLESLCHCPFYEEAMHLVEEGKIYSRVLRTEMLECLGDSDFLAK 387
A A++A + + H E + + ++ GKI LRT+ L+ L +SD
Sbjct: 535 AFEADIAAGKFIEHG-EFEKNLYGTSIDSVRQVINSGKICLLSLRTQSLKTLRNSDLKPY 593
Query: 388 LHCIRQAFQVILSESANRIFLAESGRKILSALIVKARKNPKKFE 431
+ IF+A ++ L AL+ K KNPK E
Sbjct: 594 I-----------------IFIAPPSQERLRALLAKEGKNPKPEE 620
>gi|239744133 PREDICTED: hypothetical protein [Homo sapiens]
Length = 375
Score = 30.0 bits (66), Expect = 6.8
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 127 SCSSSRQNLTLSLSSTKDKGSQVCNYANGGLFS----KYSGSAQSLASVQSVNSCHSCAC 182
SC SS+ + T S S+ S CN+ + + S + SG++ + S QS + +C+C
Sbjct: 30 SCQSSQTSSTCSCQSS-GTSSTSCNWQSSRISSTCSCQSSGTSSTSCSCQSSETSSTCSC 88
Query: 183 GNSNS 187
+S +
Sbjct: 89 QSSGT 93
>gi|58535453 CDK5 regulatory subunit associated protein 2 isoform b
[Homo sapiens]
Length = 1814
Score = 29.6 bits (65), Expect = 8.8
Identities = 31/139 (22%), Positives = 60/139 (43%), Gaps = 9/139 (6%)
Query: 391 IRQAFQVILSESANRIFLAESGRKILSALIVKARKNPKKFEDVFDEMIYFLEQTDHWGST 450
+++ Q+++ S LAE+G + + ARK ++ ED+ + I LE+
Sbjct: 117 LQEREQLLIKASKAVESLAEAGGSEIQRVKEDARKKVQQVEDLLTKRILLLEKDVTAAQA 176
Query: 451 EMELAARGVKNLNFYDVVLDFILMDSFEDLENPPTSIQNVVNNR-----WLNSSFKETAV 505
E+E A G + + L+ L + + + ++ V++ + L S K
Sbjct: 177 ELEKAFAGTETEKALRLRLESKLSE-MKKMHEGDLAMALVLDEKDRLIEELKLSLKSKEA 235
Query: 506 ASSCWSVLKQKRQQMKIPD 524
C LK+++ QM PD
Sbjct: 236 LIQC---LKEEKSQMACPD 251
>gi|58535451 CDK5 regulatory subunit associated protein 2 isoform a
[Homo sapiens]
Length = 1893
Score = 29.6 bits (65), Expect = 8.8
Identities = 31/139 (22%), Positives = 60/139 (43%), Gaps = 9/139 (6%)
Query: 391 IRQAFQVILSESANRIFLAESGRKILSALIVKARKNPKKFEDVFDEMIYFLEQTDHWGST 450
+++ Q+++ S LAE+G + + ARK ++ ED+ + I LE+
Sbjct: 117 LQEREQLLIKASKAVESLAEAGGSEIQRVKEDARKKVQQVEDLLTKRILLLEKDVTAAQA 176
Query: 451 EMELAARGVKNLNFYDVVLDFILMDSFEDLENPPTSIQNVVNNR-----WLNSSFKETAV 505
E+E A G + + L+ L + + + ++ V++ + L S K
Sbjct: 177 ELEKAFAGTETEKALRLRLESKLSE-MKKMHEGDLAMALVLDEKDRLIEELKLSLKSKEA 235
Query: 506 ASSCWSVLKQKRQQMKIPD 524
C LK+++ QM PD
Sbjct: 236 LIQC---LKEEKSQMACPD 251
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.132 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,939,153
Number of Sequences: 37866
Number of extensions: 895233
Number of successful extensions: 2564
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 2552
Number of HSP's gapped (non-prelim): 25
length of query: 632
length of database: 18,247,518
effective HSP length: 108
effective length of query: 524
effective length of database: 14,157,990
effective search space: 7418786760
effective search space used: 7418786760
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.